Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Nakazawaea_20peltata_20[genbank_20GCA_5F001599355.1_202016-03-01]
11 sequences; 11,653,826 total letters
Query= NC_002331.1
Length=178733
Score E
Sequences producing significant alignments: (Bits) Value
seq5 100 3e-16
seq8 91.5 2e-13
>seq5
Length=1057341
Score = 100 bits (110), Expect = 3e-16
Identities = 164/234 (70%), Gaps = 2/234 (1%)
Strand=Plus/Plus
Query 42951 TATTGTCCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAA 43010
||||| ||||||||||| | ||| || || || | || ||||||||||| ||||||
Sbjct 898797 TATTGACCTCCTCTTAATCTCAAGACTAAGTGAAGAGTAGATTCCTTTTGAATGTTGTAA 898856
Query 43011 TCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCG 43070
|||| || ||| | | || || | |||||||||||||| || | || || |||||
Sbjct 898857 TCAGACAAAGTTCTACCATCTTCCAATTGCTTACCAGCGAAAATCAATCTTTGTTGGTCA 898916
Query 43071 GCCGGCACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCGTCGCCACCGTGTCGCTCGA 43129
| || | | ||| |||| | ||| |||| | |||| | | | |||||| ||
Sbjct 898917 GGTGGAATACCCTCTTTGT-CTTGAATTTTAGACTTGACATTGTCAATGGTGTCGGAGGA 898975
Query 43130 TTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183
||| || || | ||||| || || || |||| || || || |||||||||||
Sbjct 898976 TTCAACTTCCAAAGTGATAGTCTTACCAGTTAAGGTTTTGACGAAGATTTGCAT 899029
Score = 86.0 bits (94), Expect = 7e-12
Identities = 161/234 (69%), Gaps = 2/234 (1%)
Strand=Plus/Minus
Query 42957 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 43016
|| ||||| || | ||| ||||| ||||| ||| |||||||| || ||||| || | |
Sbjct 274452 CCACCTCTCAATCTCAAAACCAAGTGCAAAGTGGATTCCTTTTGGATGTTGTAGTCGGAC 274393
Query 43017 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGC 43076
| || | |||| |||| ||||||||||| || || | || || ||||| | ||
Sbjct 274392 AAGGTTCTGCCGTCCTCTAATTGCTTACCAGCAAAGATCAATCTTTGTTGGTCAGGTGGG 274333
Query 43077 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCG-CCACCGTGTCGCTCGATTCCAC 43135
| | |||||||| ||| || |||| ||| | | | ||||| ||||| ||
Sbjct 274332 ATACCTTCCTTGTCTTGGATCTTGGACTTGA-CGTTGTCAATAGTGTCAGAAGATTCAAC 274274
Query 43136 ATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATTTTTAC 43189
|| | || ||||| || || || || ||||| || || |||||||| || ||
Sbjct 274273 TTCCAAGGTAATGGTCTTACCTGTAAGGGTCTTAACGAAAATTTGCATCTTGAC 274220
>seq8
Length=648860
Score = 91.5 bits (100), Expect = 2e-13
Identities = 161/232 (69%), Gaps = 2/232 (1%)
Strand=Plus/Plus
Query 42957 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 43016
|| ||||| || | ||| ||||| ||||| ||| ||||||||| || ||||| |||| |
Sbjct 616582 CCACCTCTCAATCTCAAGACCAAGTGCAAGGTGGACTCCTTTTGGATGTTGTAGTCAGAC 616641
Query 43017 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGC 43076
| ||| | | || || | ||||||||||| || || | || || ||||| | ||
Sbjct 616642 AAAGTTCTACCATCCTCCAATTGCTTACCAGCAAAGATCAATCTTTGTTGGTCAGGTGGG 616701
Query 43077 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCG-CCACCGTGTCGCTCGATTCCAC 43135
| | ||||||||| ||| || |||| ||| | | | ||||| ||||| ||
Sbjct 616702 ATACCCTCCTTGTCTTGGATCTTGGACTTGA-CGTTGTCAATGGTGTCAGAAGATTCAAC 616760
Query 43136 ATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATTTTT 43187
|| | || ||||| || || || | ||||| || || |||||||| |||
Sbjct 616761 TTCCAAGGTAATGGTCTTACCTGTCAAAGTCTTAACGAAAATTTGCATCTTT 616812
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 571817521375080
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |