Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Nakazawaea_20peltata_20[genbank_20GCA_5F001599355.1_202016-03-01]
11 sequences; 11,653,826 total letters
Query= NC_002816.1
Length=123500
Score E
Sequences producing significant alignments: (Bits) Value
seq5 120 2e-22
seq8 116 3e-21
>seq5
Length=1057341
Score = 120 bits (132), Expect = 2e-22
Identities = 165/229 (72%), Gaps = 4/229 (2%)
Strand=Plus/Plus
Query 45110 CCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTC 45169
||||||||||||||||| |||||||| || || ||||| |||||||||||||| |
Sbjct 899259 CCACCTCTCAATCTTAAGACCAAGTGAAGGGTAGATTCCTTTTGAATGTTGTAGTCAGAC 899318
Query 45170 A--GTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAG 45227
| ||| | |||| || | ||| || || || || ||||| | ||||| || ||||
Sbjct 899319 AAGGTT--CTGCCGTCCTCTAATTGCTTACCAGCAAAAATCAATCTTTGTTGATCTGGAG 899376
Query 45228 GCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCA 45287
| | ||| |||||||| ||| || |||||| | | | |||| | ||| |
Sbjct 899377 GAATACCTTCCTTGTCTTGAATCTTAGACTTAACATTGTCAATGGTGTCGGAAGACTCAA 899436
Query 45288 CCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336
|||| | |||||| ||||| || |||| |||||| || || ||||||||
Sbjct 899437 CCTCAAGGGTAATGGTCTTACCGGTCAAAGTCTTGACGAAAATTTGCAT 899485
Score = 102 bits (112), Expect = 6e-17
Identities = 161/229 (70%), Gaps = 4/229 (2%)
Strand=Plus/Plus
Query 45110 CCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTC--GT 45167
|||||||||||||| || || ||||| | ||| ||||| || ||||||||||| |
Sbjct 899031 CCACCTCTCAATCTCAAAACTAAGTGTAAAGTGGATTCCTTTTGGATGTTGTAGTCAGAT 899090
Query 45168 TCAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAG 45227
|||| | | | || |||| ||| || || || || || || | |||||||| || |
Sbjct 899091 AAAGTT--CTACCATCTTCCAATTGCTTACCAGCAAAGATTAATCTTTGTTGGTCAGGTG 899148
Query 45228 GCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCA 45287
| | |||||| ||||| |||||| |||||| | | |||| | || |
Sbjct 899149 GAATACCCTCTTTGTCTTGAATTTTGGACTTAACATTGTCAATAGTGTCAGAAGATTCAA 899208
Query 45288 CCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336
| |||| || || ||||| || |||| |||||| ||||||||||||||
Sbjct 899209 CTTCCAAAGTGATAGTCTTACCAGTCAAAGTCTTAACAAAGATTTGCAT 899257
Score = 102 bits (112), Expect = 6e-17
Identities = 161/229 (70%), Gaps = 4/229 (2%)
Strand=Plus/Plus
Query 45110 CCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTC 45169
|||||||||||||| || |||||||||| ||| ||||| || |||||||||||| |
Sbjct 899487 CCACCTCTCAATCTCAAAACCAAGTGCAAGGTGGATTCCTTTTGGATGTTGTAGTCGGAC 899546
Query 45170 --AGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAG 45227
|||| | | | || |||| ||| || || || || || || | |||||||| || |
Sbjct 899547 AAAGTT--CTACCATCTTCCAATTGCTTACCAGCAAAGATTAATCTTTGTTGGTCAGGTG 899604
Query 45228 GCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCA 45287
| | ||| ||||| || || || ||| || | | | |||| || |
Sbjct 899605 GAATACCTTCCTTATCTTGGATCTTGGACTTGACGTTGTCAATGGTGTCAGAGGATTCAA 899664
Query 45288 CCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336
|||| | |||||| ||||| || || |||||||| || |||||||||||
Sbjct 899665 CCTCAAGGGTAATAGTCTTACCAGTAAGAGTCTTAACGAAGATTTGCAT 899713
Score = 100 bits (110), Expect = 2e-16
Identities = 163/233 (70%), Gaps = 4/233 (2%)
Strand=Plus/Minus
Query 45110 CCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTC 45169
|||||||||||||| || |||||||||| ||| ||||| || |||||||||||| |
Sbjct 274452 CCACCTCTCAATCTCAAAACCAAGTGCAAAGTGGATTCCTTTTGGATGTTGTAGTCGGAC 274393
Query 45170 A--GTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAG 45227
| ||| | |||| || | ||| || || || || ||||| | |||||||| || |
Sbjct 274392 AAGGTT--CTGCCGTCCTCTAATTGCTTACCAGCAAAGATCAATCTTTGTTGGTCAGGTG 274335
Query 45228 GCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCA 45287
| | ||| |||||||| || || ||| || | | |||| | || |
Sbjct 274334 GGATACCTTCCTTGTCTTGGATCTTGGACTTGACGTTGTCAATAGTGTCAGAAGATTCAA 274275
Query 45288 CCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCATGTTG 45340
| |||| |||||| ||||| || || || ||||| || || |||||||| |||
Sbjct 274274 CTTCCAAGGTAATGGTCTTACCTGTAAGGGTCTTAACGAAAATTTGCATCTTG 274222
>seq8
Length=648860
Score = 116 bits (128), Expect = 3e-21
Identities = 166/232 (72%), Gaps = 4/232 (2%)
Strand=Plus/Plus
Query 45110 CCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTC 45169
|||||||||||||| || |||||||||| ||| |||||| || ||||||||||| |
Sbjct 616582 CCACCTCTCAATCTCAAGACCAAGTGCAAGGTGGACTCCTTTTGGATGTTGTAGTCAGAC 616641
Query 45170 --AGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAG 45227
|||| | | | || |||| ||| || || || || ||||| | |||||||| || |
Sbjct 616642 AAAGTT--CTACCATCCTCCAATTGCTTACCAGCAAAGATCAATCTTTGTTGGTCAGGTG 616699
Query 45228 GCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCA 45287
| | |||||||||||| || || ||| || | | | |||| | || |
Sbjct 616700 GGATACCCTCCTTGTCTTGGATCTTGGACTTGACGTTGTCAATGGTGTCAGAAGATTCAA 616759
Query 45288 CCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCATGTT 45339
| |||| |||||| ||||| || |||| |||||| || || |||||||| ||
Sbjct 616760 CTTCCAAGGTAATGGTCTTACCTGTCAAAGTCTTAACGAAAATTTGCATCTT 616811
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 395075147035231
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |