Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nakazawaea_20peltata_20[genbank_20GCA_5F001599355.1_202016-03-01] 11 sequences; 11,653,826 total letters Query= NC_003083.1 Length=118584 Score E Sequences producing significant alignments: (Bits) Value seq5 98.7 8e-16 seq8 87.8 1e-12 >seq5 Length=1057341 Score = 98.7 bits (108), Expect = 8e-16 Identities = 151/214 (71%), Gaps = 1/214 (0%) Strand=Plus/Plus Query 18112 TAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAAT 18171 |||| |||| |||||| || ||||| ||||||||||||||||| | || ||| | | | Sbjct 899273 TAAG-ACCAAGTGAAGGGTAGATTCCTTTTGAATGTTGTAGTCAGACAAGGTTCTGCCGT 899331 Query 18172 CTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTAT 18231 | || ||||| || || ||| | || | |||||||||||| || | |||||||| | Sbjct 899332 CCTCTAATTGCTTACCAGCAAAAATCAATCTTTGTTGATCTGGAGGAATACCTTCCTTGT 899391 Query 18232 CGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGC 18291 | ||| | ||| || | ||| ||||| | ||| |||| ||| ||| Sbjct 899392 CTTGAATCTTAGACTTAACATTGTCAATGGTGTCGGAAGACTCAACCTCAAGGGTAATGG 899451 Query 18292 TTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 | || |||||||| || || || ||||||||||| Sbjct 899452 TCTTACCGGTCAAAGTCTTGACGAAAATTTGCAT 899485 Score = 95.1 bits (104), Expect = 9e-15 Identities = 147/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 18117 ACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCC 18176 |||| ||| | || ||||| ||||| ||||||||||||| || ||| ||| ||||||| Sbjct 899505 ACCAAGTGCAAGGTGGATTCCTTTTGGATGTTGTAGTCGGACAAAGTTCTACCATCTTCC 899564 Query 18177 AATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCGGCA 18236 ||||| || || ||| |||| | ||||||||| || || | ||||||||||| Sbjct 899565 AATTGCTTACCAGCAAAGATTAATCTTTGTTGGTCAGGTGGAATACCTTCCTTATCTTGG 899624 Query 18237 ATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTTTG 18296 || | |||||| | ||| |||||| || || |||| ||| || | || Sbjct 899625 ATCTTGGACTTGACGTTGTCAATGGTGTCAGAGGATTCAACCTCAAGGGTAATAGTCTTA 899684 Query 18297 CCGGTCAATGTTTTTACAAAAATTTGCATT 18326 || || | || || || || ||||||||| Sbjct 899685 CCAGTAAGAGTCTTAACGAAGATTTGCATT 899714 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158 ||||| | || ||| | || | |||||| || ||||| |||||||||||||| || | | Sbjct 898803 CCTCCTCTTAATCTCAAGACTAAGTGAAGAGTAGATTCCTTTTGAATGTTGTAATCAGAC 898862 Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218 | ||| ||| |||||||||||| || || || | || | ||||||||| || || Sbjct 898863 AAAGTTCTACCATCTTCCAATTGCTTACCAGCGAAAATCAATCTTTGTTGGTCAGGTGGA 898922 Query 18219 ACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTT 18278 | || || || || ||||| |||||| | ||| ||||| || || | Sbjct 898923 ATACCCTCTTTGTCTTGAATTTTAGACTTGACATTGTCAATGGTGTCGGAGGATTCAACT 898982 Query 18279 TCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 || | ||||| | || || || || ||||| || || |||||||| Sbjct 898983 TCCAAAGTGATAGTCTTACCAGTTAAGGTTTTGACGAAGATTTGCAT 899029 Score = 87.8 bits (96), Expect = 1e-12 Identities = 143/205 (70%), Gaps = 2/205 (1%) Strand=Plus/Plus Query 18121 TGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCCAATT 18180 ||| ||||| ||||| ||||| ||||||||||| | | ||| ||| ||||||||||| Sbjct 899055 TGTAAAGTG--GATTCCTTTTGGATGTTGTAGTCAGATAAAGTTCTACCATCTTCCAATT 899112 Query 18181 GTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCGGCAATTT 18240 | || || ||| |||| | ||||||||| || || | || || || || ||||| Sbjct 899113 GCTTACCAGCAAAGATTAATCTTTGTTGGTCAGGTGGAATACCCTCTTTGTCTTGAATTT 899172 Query 18241 GTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTTTGCCGG 18300 ||| || | ||| ||||||| | || ||| | ||||| | || || | Sbjct 899173 TGGACTTAACATTGTCAATAGTGTCAGAAGATTCAACTTCCAAAGTGATAGTCTTACCAG 899232 Query 18301 TCAATGTTTTTACAAAAATTTGCAT 18325 |||| || || ||||| |||||||| Sbjct 899233 TCAAAGTCTTAACAAAGATTTGCAT 899257 >seq8 Length=648860 Score = 87.8 bits (96), Expect = 1e-12 Identities = 147/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 18117 ACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCC 18176 |||| ||| | || || || ||||| ||||||||||| | || ||| ||| ||| ||| Sbjct 616600 ACCAAGTGCAAGGTGGACTCCTTTTGGATGTTGTAGTCAGACAAAGTTCTACCATCCTCC 616659 Query 18177 AATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCGGCA 18236 ||||| || || ||| |||| | ||||||||| || || | || ||||| || Sbjct 616660 AATTGCTTACCAGCAAAGATCAATCTTTGTTGGTCAGGTGGGATACCCTCCTTGTCTTGG 616719 Query 18237 ATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTTTG 18296 || | |||||| | ||| |||||| | || ||| | ||| ||| | || Sbjct 616720 ATCTTGGACTTGACGTTGTCAATGGTGTCAGAAGATTCAACTTCCAAGGTAATGGTCTTA 616779 Query 18297 CCGGTCAATGTTTTTACAAAAATTTGCATTTTT 18329 || ||||| || || || ||||||||||| ||| Sbjct 616780 CCTGTCAAAGTCTTAACGAAAATTTGCATCTTT 616812 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 379343949144195