Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nakazawaea_20peltata_20[genbank_20GCA_5F001599355.1_202016-03-01] 11 sequences; 11,653,826 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq1 264 1e-65 seq5 93.3 4e-14 seq8 87.8 2e-12 >seq1 Length=2934271 Score = 264 bits (292), Expect = 1e-65 Identities = 1178/1847 (64%), Gaps = 36/1847 (2%) Strand=Plus/Minus Query 22154 TAATACATGCCCGTCTTCAGACCCATCTTCCACGCGTAAAAATGTATCGACGTCAATTTT 22213 || ||||| || ||||||| |||| ||||||| |||| || || || ||||| || Sbjct 86958 TAGTACATACCGGTCTTCAAACCCTTCTTCCAACCGTAGAAGTGCATACTGGTCAACTTA 86899 Query 22214 CCATAACTCGGCAAGTCCATGTACACATTGAACGACTGACTCTGATCGATAAACGCTCCT 22273 || | | || | || | | ||| || || ||| ||||| || | || || Sbjct 86898 CCCATAGTTGGGGCCTTGATATGAATATTCAAAGATTGAGATTGATCAATGTAGGCACCA 86839 Query 22274 CGATCGGCGGCCATATTTATCAATGTACGCATCGACATTTCCCATACGGTCTTGTACAGT 22333 || ||||| ||||| | || | || |||| |||||| ||||||||||| | | Sbjct 86838 CGGTCGGCAGCCATGTCAATGATGGTCTTTTGAGACAATTCCCAAACGGTCTTGTAGATT 86779 Query 22334 TGCCTGATCTCTAACGGTATCGATTCG-ATCCTCTGGACGGACCCGTTATTGTGTATGAT 22392 | | | | || || || | || | | | || | || ||||||| | ||||| Sbjct 86778 TTCTTCAATTCATCTGGGAT-GTTTGGCAAGTTTTGAATAGATCCGTTATCGGAAATGAT 86720 Query 22393 CAAATTTTTAATCGTATCGTTCCACAAACCGATGGCGGTCAAATCT-TTGACCAG-ATGA 22450 || || || | ||||||||||| || | | ||||||| || || || ||| Sbjct 86719 ATGGTTCTTCATGGAGTCGTTCCACAATCCCAAATCAACCAAATCTCTTAACAAGTATG- 86661 Query 22451 CGGTTCACCACTTGAAACTCGCCGGACAAGACGCGGCGTTGGTAAATGTTGGATGTGAAC 22510 |||| || | ||| || || |||| ||| || | | ||||||||| || ||| || Sbjct 86660 -GGTTGACAATTTGGAATTCACCGGCCAACACTCTTCTAGAGTAAATGTTAGAAGTGTAC 86602 Query 22511 GGTTCGAAAGATTCATTGTTTCCCAGTATCTGAGCGGTCGAAGCGGTCGGCATCGGCGCC 22570 || |||||| |||| |||| |||| || |||| || ||||| || ||||| || || Sbjct 86601 GGCTCGAAACATTCGTTGTAACCCAAGATTTGAGAAGTAGAAGCAGTTGGCATTGGAGCA 86542 Query 22571 AACAGTAGCGAGTTTCTCAAGCCGTGCTTTGAAATTTTACTCTTGAGCATCGACCAGTCC 22630 | || | |||||||||| |||||||| | | | | ||| | || ||||||| Sbjct 86541 ACCAACAAAGAGTTTCTCATACCGTGCTTAGCTAATCTCTCCTTCAACAGATCCCAGTCC 86482 Query 22631 CACAGATCGGACGGCGTCACATTGTCCCACATATCGTATTGCAACACGCCGCGACTCGCC 22690 |||| |||| ||| | ||||||||| |||| |||| || | || || || Sbjct 86481 CACAAGTCGGTTGGCTTTC---TGTCCCACAAATCGAATTGTAATAAACCTTGAGAAGCT 86425 Query 22691 GGGCTGCCTTCGTACGTTTCGTACGGACCATATATCGCGGCAAGTTCGCAGCTCGCCTCC 22750 || || ||||| || ||| ||||| | | | ||| | |||| || ||| Sbjct 86424 GGAGATCCCTCGTAACTTGGGTATGGACCTTCAACCATGGCCAATTCGATACTTTGCTCG 86365 Query 22751 AACGCGCCGTAATATATAGTCTCGAAGATTTTCTTGTTCAATTCGGCGGCGGCGACGCTT 22810 | || ||| || || ||||||||||||| |||||||||| ||| | || Sbjct 86364 ACAGCAGCGTGGTAGATGGTCTCGAAGATTTGAATGTTCAATTCCTTGGCCTCAACAGAG 86305 Query 22811 TCGTACGGCATACGCATCATCACGAACGCGTCCGCCATACCCTGAACGCCTATACCGATC 22870 ||| | | | | | ||| ||| | || |||| ||| || || || | | || Sbjct 86304 TCGAAACCAACTCTGAACTTCATGAAAGTATCGGCCAAACCTTGGACACCAAGGGCAATT 86245 Query 22871 GGTCGGTTTTTCAGATTCGACACTTTTGCCTCGGGCAAA-GGATACCAATTCGAATCGAT 22929 |||| ||| |||| || || || || | ||| || || | || || || Sbjct 86244 GGTCTGTTCTTCATGTTAGATT-TTCTGGCAGTTTCAACTGGGTAGTAGTTTCTGTCAAT 86186 Query 22930 TGTTCTGTTCAAGTTTCTGGTCACAATTTTCGTTATNNNNNNNNNNNNNTCAAAGTCGTA 22989 | ||||||||||||| || || | || | || ||||||| ||| Sbjct 86185 GATCTTGTTCAAGTTTCTAGTAACCAACTTGGCAATTTCGTGCAACTTCTCAAAGTTGTA 86126 Query 22990 A-ACG------CCCGAT--TGTACAACAAA--CTTGTTGACGGCGATCGAGGCAAGATTG 23038 ||| | | || | | | ||||| | || | ||| || ||||| | || Sbjct 86125 CCACGATTTTTCACCATCATCTTCTACAAAGGCAGGT--AAGGCAATAGAGGCCAAGTTA 86068 Query 23039 CATACGGCCACCTCGTCTTTGGACGTGTACTCTACAATTTCGGTACATAGATTGCTACAC 23098 || ||||| || || | | || || ||||| || ||| | || | || Sbjct 86067 CAAACGGCTGTTTCTTCAGGGTCAGAATATTCGACAATCTCACAACACAAGTTAGAAGAC 86008 Query 23099 TTTATCGTGCCCAAATTGCTCTGGTTGCTTTTTCGATTGCACGAATCCTTGTAGAGCATG 23158 || || | ||||| || | |||||| | || || || | ||| ||||| | |||| Sbjct 86007 TTGATAATACCCAAGTTCTTTTGGTTGGTCTTCTTGTTACAAGCATCTTTGTACAACATG 85948 Query 23159 TACGGCGTGCCCGTCTCGACCTGCGACTCGATGATCGCTCGCCACATAGTCTGAGCGTGA 23218 | || || || ||||| || | ||| | || | ||||| |||| || | Sbjct 85947 AATGGAGTACCGGTCTCAGTTTGAGCCTCCAAAATGGAGTACCACAATTTCTGGGCCTTG 85888 Query 23219 ACACGTCGCACGTACCT--GCCTTCTTCCTCGTACTTTTGGTACAACGCGTCAAATTCGG 23276 ||| | | |||| |||||||| |||||| || | |||||| || || || Sbjct 85887 ACAGTTTGTC--TACCACGGCCTTCTTTCTCGTATTTCTCGTACAAAGCAATGAACTCAT 85830 Query 23277 CACCGTAACAGTCGGCCAGGCCGGGCGATTGCATCGGACACATGAGACTCCACATTGAGT 23336 |||||||| ||||| | || || | || | ||| | | | |||| | || Sbjct 85829 CACCGTAAACCTCGGCTAAACCTGGAGCTTCATTTGGAGAGAACAAGGTCCAATCTTGGT 85770 Query 23337 CATTTTCAACGCGTCTCATAAAAAGATCCGGTATCCATAGAGCGTAGAACAGTTCGCGGG 23396 ||||| || | | ||| || | ||| || ||||||| ||| ||||| || | || Sbjct 85769 TCTTTTCGACTCTTTGCATGAACAAATCTGGGATCCATAAAGCTGGGAACAAATCTCTGG 85710 Query 23397 CGCGCACCTCCTCTTTGCCGGTGTTCTTTTTCAAATCCAAAAAGTCCAACACGTCCGCAT 23456 | | | || || || ||| |||||| | | || | ||||| || | ||| |||| Sbjct 85709 CTCTAATTTCTTCCTTACCGTGATTCTTTCTGATGTCAATGAAGTCGAAGATGTCGGCAT 85650 Query 23457 GCCACGGCTCGAGGTAAACGGCAAACGCGCCCGGTCTCTTATTGCCGCCCTGATCGACGT 23516 |||| ||||| | ||| | |||||| || || |||||||| || || || || ||||||| Sbjct 85649 GCCATGGCTCAATGTACAAGGCAAAGGCACCTGGTCTCTTGTTACCACCTTGGTCGACGT 85590 Query 23517 AACGGGCCGTGTTGTTGTACACTCTTAGCATCGGCACGAGACCGTTGGACGCGCCGCCTA 23576 |||| || ||||||||| | ||||| | ||| || | | ||||||||| | ||| || Sbjct 85589 AACGAGCAGTGTTGTTGAAGACTCTAACCATTGGAATAATACCGTTGGAAGTACCG-TTA 85531 Query 23577 CGCCCGCCACACT-CGAACCTTTTGCTCGAACGTTGTGAACGTGGAAACCTATGCCTCCG 23635 ||| || | ||||| | |||| || |||||| | || ||||| || || ||| Sbjct 85530 GTACCGGCAATGTAAGAACCAGTGGCTCTAATGTTGTGGATATGCAAACCAATACCACCG 85471 Query 23636 CCCGATTTCGATATCATCGCGCATTGTTTCAGAGTGTCGTAGATGCCCTCGATGCTGTCC 23695 | | || || |||| || || | ||||| |||||| || || || ||||| ||| Sbjct 85470 GCAGTCTTGGAAATCAAGGCACACTCTTTCAAAGTGTCATAAATACCTTCGATAGAATCC 85411 Query 23696 TCTTTGGTCGCGACCAAGAAACACGAAGACATTTGCGCTTTGGGCGTAGCGGCCGAGAAC 23755 || || | || || | |||||| ||||||||||| | | || ||| | || |||| Sbjct 85410 TCCTTCATGGCAACAAGGAAACAAGAAGACATTTGTGGGTGTGGAGTACCAGCGTTGAAC 85351 Query 23756 AGTGTCGGGCTGGCGTGCGTAAAGTA-TCCATTCGACATTAGATTGTACGTGTCGATGGC 23814 | || || || || || || || | || |||| | || || || |||||| | Sbjct 85350 AAAGTTGGAGAAGCATGGGTGAAATACTTCA-AAGACAACATGTTATAAGTCTCGATGAC 85292 Query 23815 GGCATCAATGTCCTCTCCGTGTATACCGATGGCGACGCGCATCATCATGTATTGAGGTCT 23874 || |||| || ||||| | ||| |||||||| | ||| ||| | ||| ||||| Sbjct 85291 CTTCTCGATGTTATCACCGTGGACACCAATGGCGACTCTCATATTCAAATGTTGTGGTCT 85232 Query 23875 CTCG--ACCGTGACGCCGTTAATTTTGAACAGATATGAACGTTGCATCGTTTTAAATCCA 23932 ||| | | | | |||| || | |||| ||| || | | ||| || || || ||| Sbjct 85231 TTCGGCAACTTTA--CCGTCGATCCTCAACAAATAAGATCTCTCCATGGTCTTGAAACCA 85174 Query 23933 AAATAGTCATAGTTAAAGTCACGATCGTGCACTATGGCCGAATTCAA 23979 || |||| |||||| || ||||| || | || ||||| || || || Sbjct 85173 AAGTAGTTATAGTTGAAATCACGGTCATAAACGATGGCAGAGTTTAA 85127 >seq5 Length=1057341 Score = 93.3 bits (102), Expect = 4e-14 Identities = 159/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 31190 AACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCG 31249 || |||||||||||||| ||||| || ||||| || || || ||| | || |||||| | Sbjct 274223 AAGATGCAAATTTTCGTTAAGACCCTTACAGGTAAGACCATTACCTTGGAAGTTGAATCT 274282 Query 31250 TCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGAC 31309 || |||| | | || | ||||| | || ||||||||||| | || || ||| Sbjct 274283 TCTGACACTATTGACAACGTCAAGTCCAAGATCCAAGACAAGGAAGGTATCCCACCTGAC 274342 Query 31310 CAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTAT 31369 || || | | || || ||||| || || || || ||| | || || ||| || Sbjct 274343 CAACAAAGATTGATCTTTGCTGGTAAGCAATTAGAGGACGGCAGAACCTTGTCCGACTAC 274402 Query 31370 AACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGT 31420 ||||| ||||| ||||| ||| | || |||| | ||| |||| || ||| Sbjct 274403 AACATCCAAAAGGAATCCACTTTGCACTTGGTTTTGAGATTGAGAGGTGGT 274453 Score = 91.5 bits (100), Expect = 1e-13 Identities = 142/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||||| ||||| || || | || || || || ||||| | || |||||| | ||| Sbjct 899029 ATGCAAATCTTCGTCAAAACCTTAACTGGTAAGACTATCACTTTGGAAGTTGAATCCTCC 898970 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| | || | ||||| | ||| ||||| || || | || || ||||| Sbjct 898969 GACACCATTGACAATGTCAAGTCTAAAATTCAAGACAAAGAGGGTATTCCACCTGACCAA 898910 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 || | | || |||||||| || || |||||||| || ||| || ||||| ||| Sbjct 898909 CAAAGATTGATTTTCGCTGGTAAGCAATTGGAAGATGGTAGAACTTTGTCTGATTACAAC 898850 Query 31373 ATTCAAAAAGAATCGACTCTTCA 31395 |||||||| ||||| |||||||| Sbjct 898849 ATTCAAAAGGAATCTACTCTTCA 898827 Score = 84.2 bits (92), Expect = 2e-11 Identities = 156/229 (68%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||||||||||| |||||| |||| || || || || ||| | || ||||| | ||| Sbjct 899485 ATGCAAATTTTCGTCAAGACTTTGACCGGTAAGACCATTACCCTTGAGGTTGAGTCTTCC 899426 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| | || | || || | || ||||||||||| | || || || || Sbjct 899425 GACACCATTGACAATGTTAAGTCTAAGATTCAAGACAAGGAAGGTATTCCTCCAGATCAA 899366 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 || | | || || ||||| || || || || ||| | || || || || ||| Sbjct 899365 CAAAGATTGATTTTTGCTGGTAAGCAATTAGAGGACGGCAGAACCTTGTCTGACTACAAC 899306 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 |||||||| ||||| || ||||| |||| | ||| |||| || |||| Sbjct 899305 ATTCAAAAGGAATCTACCCTTCACTTGGTCTTAAGATTGAGAGGTGGTA 899257 >seq8 Length=648860 Score = 87.8 bits (96), Expect = 2e-12 Identities = 159/233 (68%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 31188 CAAACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAAC 31247 |||| |||||||||||||| |||||| ||||||| || || || ||| | || |||||| Sbjct 616813 CAAAGATGCAAATTTTCGTTAAGACTTTGACAGGTAAGACCATTACCTTGGAAGTTGAAT 616754 Query 31248 CGTCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCG 31307 | || |||| | || | ||||| | || |||||||| || | || || | Sbjct 616753 CTTCTGACACCATTGACAACGTCAAGTCCAAGATCCAAGACAAGGAGGGTATCCCACCTG 616694 Query 31308 ACCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATT 31367 |||| || | | || || ||||| || || ||||| || || ||| || || | Sbjct 616693 ACCAACAAAGATTGATCTTTGCTGGTAAGCAATTGGAGGATGGTAGAACTTTGTCTGACT 616634 Query 31368 ATAACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGT 31420 | ||||| ||||| || || || | || |||| | ||| |||| || ||| Sbjct 616633 ACAACATCCAAAAGGAGTCCACCTTGCACTTGGTCTTGAGATTGAGAGGTGGT 616581 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445766338707120