Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nakazawaea_20peltata_20[genbank_20GCA_5F001599355.1_202016-03-01] 11 sequences; 11,653,826 total letters Query= NC_004062.1 Length=119217 Score E Sequences producing significant alignments: (Bits) Value seq5 95.1 9e-15 seq8 82.4 6e-11 >seq5 Length=1057341 Score = 95.1 bits (104), Expect = 9e-15 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 || || | || |||||| ||||| || | || |||||||| | ||||| || ||| Sbjct 899259 CCACCTCTCAATCTTAAGACCAAGTGAAGGGTAGATTCCTTTTGAATGTTGTAGTCAGAC 899318 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 || || | |||| || ||||| || || ||||||||||||| |||||||| | || Sbjct 899319 AAGGTTCTGCCGTCCTCTAATTGCTTACCAGCAAAAATCAATCTTTGTTGATCTGGAGGA 899378 Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACG 43062 | |||||| || || ||| || || || ||| |||||| || ||| || Sbjct 899379 ATACCTTCCTTGTCTTGAATCTTAGACTTAACATTGTCAATGGTGTCGGAAGACTCAACC 899438 Query 43063 TCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 || | || || || || ||||| | ||| || || ||||||||||| Sbjct 899439 TCAAGGGTAATGGTCTTACCGGTCAAAGTCTTGACGAAAATTTGCAT 899485 Score = 91.5 bits (100), Expect = 1e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 || || | || ||| || ||||| || | |||| |||||||| | ||||| |||||| Sbjct 274452 CCACCTCTCAATCTCAAAACCAAGTGCAAAGTGGATTCCTTTTGGATGTTGTAGTCGGAC 274393 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 || || | |||| || ||||| || || ||||| ||||||| ||||| || | || Sbjct 274392 AAGGTTCTGCCGTCCTCTAATTGCTTACCAGCAAAGATCAATCTTTGTTGGTCAGGTGGG 274333 Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACG 43062 | |||||| || || |||| ||||| || ||| ||||| || || || Sbjct 274332 ATACCTTCCTTGTCTTGGATCTTGGACTTGACGTTGTCAATAGTGTCAGAAGATTCAACT 274273 Query 43063 TCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCATTTT 43112 || | || || || || || || || || || || ||||||||||| || Sbjct 274272 TCCAAGGTAATGGTCTTACCTGTAAGGGTCTTAACGAAAATTTGCATCTT 274223 >seq8 Length=648860 Score = 82.4 bits (90), Expect = 6e-11 Identities = 156/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 || || | || ||| || ||||| || | ||| ||||||||| | ||||| || ||| Sbjct 616582 CCACCTCTCAATCTCAAGACCAAGTGCAAGGTGGACTCCTTTTGGATGTTGTAGTCAGAC 616641 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 || || | | || |||||||| || || ||||| ||||||| ||||| || | || Sbjct 616642 AAAGTTCTACCATCCTCCAATTGCTTACCAGCAAAGATCAATCTTTGTTGGTCAGGTGGG 616701 Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACG 43062 | ||| || || || |||| ||||| || ||| ||||| || || || Sbjct 616702 ATACCCTCCTTGTCTTGGATCTTGGACTTGACGTTGTCAATGGTGTCAGAAGATTCAACT 616761 Query 43063 TCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCATTTT 43112 || | || || || || || || | ||| || || ||||||||||| || Sbjct 616762 TCCAAGGTAATGGTCTTACCTGTCAAAGTCTTAACGAAAATTTGCATCTT 616811 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 381369548872638