Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Nakazawaea_20peltata_20[genbank_20GCA_5F001599355.1_202016-03-01]
11 sequences; 11,653,826 total letters
Query= NC_004690.1
Length=113220
Score E
Sequences producing significant alignments: (Bits) Value
seq5 145 6e-30
seq8 140 2e-28
>seq5
Length=1057341
Score = 145 bits (160), Expect = 6e-30
Identities = 169/228 (74%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196
|||||||||||||| |||||||| || | ||||| || ||||| |||||||| || |
Sbjct 899031 CCACCTCTCAATCTCAAAACTAAGTGTAAAGTGGATTCCTTTTGGATGTTGTAGTCAGAT 899090
Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256
| | |||| | ||||| ||||| || ||||| | || || | ||||||||| ||||
Sbjct 899091 AAAGTTCTACCATCTTCCAATTGCTTACCAGCAAAGATTAATCTTTGTTGGTCAGGTGGA 899150
Query 15257 ATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACA 15316
|| || |||||||| ||||||| ||| ||| | || || || || | ||| ||
Sbjct 899151 ATACCCTCTTTGTCTTGAATTTTGGACTTAACATTGTCAATAGTGTCAGAAGATTCAACT 899210
Query 15317 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364
|| || || || || ||||| |||| ||| || ||||| |||||||||
Sbjct 899211 TCCAAAGTGATAGTCTTACCAGTCAAAGTCTTAACAAAGATTTGCATA 899258
Score = 145 bits (160), Expect = 6e-30
Identities = 169/228 (74%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196
||||||||||||||||| || || |||||||| || || ||||| |||||||| ||
Sbjct 899259 CCACCTCTCAATCTTAAGACCAAGTGAAGGGTAGATTCCTTTTGAATGTTGTAGTCAGAC 899318
Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256
| |||| |||| |||||||| || ||||| | ||||| | |||||| || |||
Sbjct 899319 AAGGTTCTGCCGTCCTCTAATTGCTTACCAGCAAAAATCAATCTTTGTTGATCTGGAGGA 899378
Query 15257 ATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACA 15316
|| ||||| ||||| ||| || ||| ||| | || ||||| ||| | || ||
Sbjct 899379 ATACCTTCCTTGTCTTGAATCTTAGACTTAACATTGTCAATGGTGTCGGAAGACTCAACC 899438
Query 15317 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364
|| | ||||||||| ||||| |||| ||| || || ||||||||||||
Sbjct 899439 TCAAGGGTAATGGTCTTACCGGTCAAAGTCTTGACGAAAATTTGCATA 899486
Score = 140 bits (154), Expect = 2e-28
Identities = 169/230 (73%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196
|||||||||||||| ||||| || || | ||||| || ||||| |||||||| |||
Sbjct 274452 CCACCTCTCAATCTCAAAACCAAGTGCAAAGTGGATTCCTTTTGGATGTTGTAGTCGGAC 274393
Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256
| |||| |||| |||||||| || ||||| | ||||| | ||||||||| |||
Sbjct 274392 AAGGTTCTGCCGTCCTCTAATTGCTTACCAGCAAAGATCAATCTTTGTTGGTCAGGTGGG 274333
Query 15257 ATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACA 15316
|| ||||| ||||| || ||| ||| || | || || || || | ||| ||
Sbjct 274332 ATACCTTCCTTGTCTTGGATCTTGGACTTGACGTTGTCAATAGTGTCAGAAGATTCAACT 274273
Query 15317 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATATT 15366
|| ||||||||||| |||||||| || || || || ||||||||||| ||
Sbjct 274272 TCCAAGGTAATGGTCTTACCTGTAAGGGTCTTAACGAAAATTTGCATCTT 274223
Score = 136 bits (150), Expect = 3e-27
Identities = 167/228 (73%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196
|| ||||| ||||| || ||||| ||||| || || || ||||| |||||||||||
Sbjct 898803 CCTCCTCTTAATCTCAAGACTAAGTGAAGAGTAGATTCCTTTTGAATGTTGTAATCAGAC 898862
Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256
| | |||| | ||||| ||||| || |||||| | ||||| | ||||||||| ||||
Sbjct 898863 AAAGTTCTACCATCTTCCAATTGCTTACCAGCGAAAATCAATCTTTGTTGGTCAGGTGGA 898922
Query 15257 ATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACA 15316
|| || |||||||| |||||| ||| ||| | || ||||| ||| ||| ||
Sbjct 898923 ATACCCTCTTTGTCTTGAATTTTAGACTTGACATTGTCAATGGTGTCGGAGGATTCAACT 898982
Query 15317 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364
|| || || || || ||||| || | ||||| || || |||||||||
Sbjct 898983 TCCAAAGTGATAGTCTTACCAGTTAAGGTTTTGACGAAGATTTGCATA 899030
Score = 127 bits (140), Expect = 1e-24
Identities = 174/243 (72%), Gaps = 0/243 (0%)
Strand=Plus/Plus
Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196
|||||||||||||| ||||| || || | |||||| || ||||| |||||||| |||
Sbjct 899487 CCACCTCTCAATCTCAAAACCAAGTGCAAGGTGGATTCCTTTTGGATGTTGTAGTCGGAC 899546
Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256
| | |||| | ||||| ||||| || ||||| | || || | ||||||||| ||||
Sbjct 899547 AAAGTTCTACCATCTTCCAATTGCTTACCAGCAAAGATTAATCTTTGTTGGTCAGGTGGA 899606
Query 15257 ATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACA 15316
|| ||||| || || || ||| ||| || | || ||||| || ||| ||
Sbjct 899607 ATACCTTCCTTATCTTGGATCTTGGACTTGACGTTGTCAATGGTGTCAGAGGATTCAACC 899666
Query 15317 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATATTTGAAAATAAA 15376
|| | |||||| || ||||| || ||||| || || || |||||||| | | |||||
Sbjct 899667 TCAAGGGTAATAGTCTTACCAGTAAGAGTCTTAACGAAGATTTGCATTGTATTAGATAAA 899726
Query 15377 ATT 15379
|||
Sbjct 899727 ATT 899729
>seq8
Length=648860
Score = 140 bits (154), Expect = 2e-28
Identities = 170/232 (73%), Gaps = 0/232 (0%)
Strand=Plus/Plus
Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196
|||||||||||||| || || || || | |||||| || ||||| |||||||| ||
Sbjct 616582 CCACCTCTCAATCTCAAGACCAAGTGCAAGGTGGACTCCTTTTGGATGTTGTAGTCAGAC 616641
Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256
| | |||| | || || ||||| || ||||| | ||||| | ||||||||| |||
Sbjct 616642 AAAGTTCTACCATCCTCCAATTGCTTACCAGCAAAGATCAATCTTTGTTGGTCAGGTGGG 616701
Query 15257 ATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACA 15316
|| || || ||||| || ||| ||| || | || ||||| || | ||| ||
Sbjct 616702 ATACCCTCCTTGTCTTGGATCTTGGACTTGACGTTGTCAATGGTGTCAGAAGATTCAACT 616761
Query 15317 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATATTTG 15368
|| ||||||||||| |||||||||| ||| || || ||||||||||| ||||
Sbjct 616762 TCCAAGGTAATGGTCTTACCTGTCAAAGTCTTAACGAAAATTTGCATCTTTG 616813
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 362179151445351
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |