Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nakazawaea_20peltata_20[genbank_20GCA_5F001599355.1_202016-03-01] 11 sequences; 11,653,826 total letters Query= NC_005038.1 Length=99657 Score E Sequences producing significant alignments: (Bits) Value seq5 100 2e-16 seq8 96.9 2e-15 >seq5 Length=1057341 Score = 100 bits (110), Expect = 2e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 33142 ACCGCCTCTTAACCGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGA 33201 ||| ||||| || | ||| ||||| ||||| || || || ||||| || ||||| || || Sbjct 899486 ACCACCTCTCAATCTCAAAACCAAGTGCAAGGTGGATTCCTTTTGGATGTTGTAGTCGGA 899545 Query 33202 CAAATTGAGTTGGTCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGG 33261 |||| | || ||||||||||| ||| ||| ||||| | ||| ||||| | || Sbjct 899546 CAAAGTTCTACCATCTTCCAATTGCTTACCAGCAAAGATTAATCTTTGTTGGTCAGGTGG 899605 Query 33262 TATGCCTTCTTTTTCGCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAAC 33321 || ||||| || || ||| || || | | ||| ||||| || || ||| Sbjct 899606 AATACCTTCCTTATCTTGGATCTTGGACTTGACGTTGTCAATGGTGTCAGAGGATTCAAC 899665 Query 33322 GTCCAGAGTTATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 || || || || || || || |||||||| || ||||| |||||||| Sbjct 899666 CTCAAGGGTAATAGTCTTACCAGTAAGAGTCTTAACGAAGATTTGCAT 899713 Score = 93.3 bits (102), Expect = 3e-14 Identities = 159/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 33139 TTCACCGCCTCTTAACCGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATC 33198 || ||| |||||||| | ||| || || || | || || || ||||| || |||||||| Sbjct 898799 TTGACCTCCTCTTAATCTCAAGACTAAGTGAAGAGTAGATTCCTTTTGAATGTTGTAATC 898858 Query 33199 AGACAAATTGAGTTGGTCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGT 33258 ||||||| | || ||||||||||| ||| || || || | ||| ||||| | Sbjct 898859 AGACAAAGTTCTACCATCTTCCAATTGCTTACCAGCGAAAATCAATCTTTGTTGGTCAGG 898918 Query 33259 GGGTATGCCTTCTTTTTCGCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTG 33318 || || || ||||| || ||| || || | | ||| |||||| || || Sbjct 898919 TGGAATACCCTCTTTGTCTTGAATTTTAGACTTGACATTGTCAATGGTGTCGGAGGATTC 898978 Query 33319 AACGTCCAGAGTTATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 ||| |||| ||| || || || || || | ||||| ||||| |||||||| Sbjct 898979 AACTTCCAAAGTGATAGTCTTACCAGTTAAGGTTTTGACGAAGATTTGCAT 899029 Score = 89.7 bits (98), Expect = 3e-13 Identities = 159/232 (69%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 33141 CACCGCCTCTTAACCGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAG 33200 |||| ||||| || | ||| ||||| ||||| || || || ||||| || ||||| || | Sbjct 274454 CACCACCTCTCAATCTCAAAACCAAGTGCAAAGTGGATTCCTTTTGGATGTTGTAGTCGG 274395 Query 33201 ACAAATTGAGTTGGTCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGG 33260 |||| | ||| || |||||||| ||| ||| || || | ||| ||||| | | Sbjct 274394 ACAAGGTTCTGCCGTCCTCTAATTGCTTACCAGCAAAGATCAATCTTTGTTGGTCAGGTG 274335 Query 33261 GTATGCCTTCTTTTTCGCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAA 33320 | || ||||| || || ||| || || | | ||| ||||| | || || Sbjct 274334 GGATACCTTCCTTGTCTTGGATCTTGGACTTGACGTTGTCAATAGTGTCAGAAGATTCAA 274275 Query 33321 CGTCCAGAGTTATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCATGTT 33372 | |||| || || || || || ||||| || || |||||||||||||| || Sbjct 274274 CTTCCAAGGTAATGGTCTTACCTGTAAGGGTCTTAACGAAAATTTGCATCTT 274223 >seq8 Length=648860 Score = 96.9 bits (106), Expect = 2e-15 Identities = 161/233 (69%), Gaps = 0/233 (0%) Strand=Plus/Plus Query 33141 CACCGCCTCTTAACCGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAG 33200 |||| ||||| || | ||| ||||| ||||| || ||||| ||||| || ||||| |||| Sbjct 616580 CACCACCTCTCAATCTCAAGACCAAGTGCAAGGTGGACTCCTTTTGGATGTTGTAGTCAG 616639 Query 33201 ACAAATTGAGTTGGTCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGG 33260 ||||| | || ||||||||||| ||| ||| || || | ||| ||||| | | Sbjct 616640 ACAAAGTTCTACCATCCTCCAATTGCTTACCAGCAAAGATCAATCTTTGTTGGTCAGGTG 616699 Query 33261 GTATGCCTTCTTTTTCGCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAA 33320 | || || || || || ||| || || | | ||| ||||| | || || Sbjct 616700 GGATACCCTCCTTGTCTTGGATCTTGGACTTGACGTTGTCAATGGTGTCAGAAGATTCAA 616759 Query 33321 CGTCCAGAGTTATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCATGTTT 33373 | |||| || || || || || || | ||| || |||||||||||||| ||| Sbjct 616760 CTTCCAAGGTAATGGTCTTACCTGTCAAAGTCTTAACGAAAATTTGCATCTTT 616812 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 318777557263878