Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nakazawaea_20peltata_20[genbank_20GCA_5F001599355.1_202016-03-01] 11 sequences; 11,653,826 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq4 156 1e-32 seq5 143 6e-29 >seq4 Length=1221263 Score = 156 bits (172), Expect = 1e-32 Identities = 293/426 (69%), Gaps = 15/426 (4%) Strand=Plus/Minus Query 268876 TGATGGTATCGTTAACGAAAATCTAGTAGAGAAGTTCTGTCAAGAGGTACAGATTCCTGA 268935 ||| ||||| || ||||| || | || ||||| |||| | ||||| || ||||||| Sbjct 1137604 TGACGGTATTGTCAACGAGAACTTGGTTGAGAACTTCTCTGCCGAGGTTCAACTTCCTGA 1137545 Query 268936 AGCCAGATGTTTTTACGGATTCCAGATAGCTATAGAAAATATTCATTCAGAGATGTACAG 268995 | | ||||| ||||| ||||| || || || || || || || |||| ||| Sbjct 1137544 ACTGAAGTGTTTCTACGGTTTCCAAATTATGATGGAGAACATCCACTCTGAGACTTACTC 1137485 Query 268996 TCTATTAATAGATACTTATATAGATGATAACAACGAAAAGAAAA-GACTATTTTCTTCTA 269054 | | || || || || || || | ||| | ||| ||| |||| | || ||| | Sbjct 1137484 TTTGTTGATTGACACCTACATCAAGGAT-----CCAAAGGAAGCTGACT-TCTTGTTCAA 1137431 Query 269055 TGAGA-----ACTATGGACTGTGTGAGaaaaaaaTCTGAATGGGCTCTGAAATGGATAAA 269109 || | ||||| ||| | | | || | || |||||| ||| |||||| || Sbjct 1137430 TGCCATCGAGACTATTCCATGTATCAAGGAGAAGGCCGACTGGGCTTTGAGATGGATCAA 1137371 Query 269110 CGATAGCG-CGCCTTA--CGGAGAAAGGTTAGTTGCTTTTGCCGCTGTAGAAGGTATATT 269166 || | | ||| || ||| || || || ||||| ||||| || || |||||||| || Sbjct 1137370 TGACAAGGACGCTTTGTTCGGTGAGAGATTGGTTGCCTTTGCTGCCGTTGAAGGTATCTT 1137311 Query 269167 CTTTTCGGGGTCTTTTGCCGCTATCTTTTGGTTGAAGAAAAGAGGCCTTATGCCAGGATT 269226 ||| || || ||||| ||||||| ||||||||||| ||||| | |||||||| || Sbjct 1137310 CTTCAGTGGTTCCTTTGCTTCTATCTTCTGGTTGAAGAAGAGAGGTTTAATGCCAGGTTT 1137251 Query 269227 AACTTTCTCTAACGAATTGATAAGCAGGGACGAAGGTTTACACTGCGACTTCGCTTGTTT 269286 || ||||||||||| ||||| || || || |||||| | ||| |||||| || ||||| Sbjct 1137250 GACCTTCTCTAACGAGTTGATCAGTAGAGATGAAGGTATGCACACCGACTTTGCCTGTTT 1137191 Query 269287 ATTATT 269292 || || Sbjct 1137190 GTTGTT 1137185 >seq5 Length=1057341 Score = 143 bits (158), Expect = 6e-29 Identities = 150/197 (76%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 |||||||| || ||||| || |||||||| | ||||| ||||| |||| ||| || ||| Sbjct 899289 GTAGATTCCTTTTGAATGTTGTAGTCAGACAAGGTTCTGCCGTCCTCTAATTGCTTACCA 899348 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 |||||||| | || |||||||| ||||| || ||||| || || |||||||| | || Sbjct 899349 GCAAAAATCAATCTTTGTTGATCTGGAGGAATACCTTCCTTGTCTTGAATCTTAGACTTA 899408 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 ||||| || | ||| ||| || || ||||| || ||||| |||||||| || | || Sbjct 899409 ACATTGTCAATGGTGTCGGAAGACTCAACCTCAAGGGTAATGGTCTTACCGGTCAAAGTC 899468 Query 104543 TTTACAAATATCTGCAT 104559 || || || || ||||| Sbjct 899469 TTGACGAAAATTTGCAT 899485 Score = 143 bits (158), Expect = 6e-29 Identities = 154/204 (75%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 104357 TGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGT 104416 || || || ||||| || || || || ||||| || | ||||||||| ||||| | ||| Sbjct 899511 TGCAAGGTGGATTCCTTTTGGATGTTGTAGTCGGACAAAGTTCTACCATCTTCCAATTGC 899570 Query 104417 TTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTT 104476 || |||||||| |||| || ||||| ||||| || || ||||| ||||| || ||||| Sbjct 899571 TTACCAGCAAAGATTAATCTTTGTTGGTCAGGTGGAATACCTTCCTTATCTTGGATCTTG 899630 Query 104477 GCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTA 104536 | || || || || | ||| || | ||| ||||| || |||||||||||||||||| Sbjct 899631 GACTTGACGTTGTCAATGGTGTCAGAGGATTCAACCTCAAGGGTAATAGTCTTACCAGTA 899690 Query 104537 AGTGTTTTTACAAATATCTGCATT 104560 || || || || || || |||||| Sbjct 899691 AGAGTCTTAACGAAGATTTGCATT 899714 Score = 140 bits (154), Expect = 7e-28 Identities = 169/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || ||||| | || | |||| ||||| || ||||| || || || || |||||| Sbjct 899028 ATACCACCTCTCAATCTCAAAACTAAGTGTAAAGTGGATTCCTTTTGGATGTTGTAGTCA 899087 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 |||| ||||||||| ||||| | ||| || |||||||| |||| || ||||| ||||| Sbjct 899088 GATAAAGTTCTACCATCTTCCAATTGCTTACCAGCAAAGATTAATCTTTGTTGGTCAGGT 899147 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || || || ||||| || ||||| || | || ||||| || | || || || ||| Sbjct 899148 GGAATACCCTCTTTGTCTTGAATTTTGGACTTAACATTGTCAATAGTGTCAGAAGATTCA 899207 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || || | || |||||||||||||| | || || ||||| || ||||| Sbjct 899208 ACTTCCAAAGTGATAGTCTTACCAGTCAAAGTCTTAACAAAGATTTGCAT 899257 Score = 136 bits (150), Expect = 9e-27 Identities = 171/234 (73%), Gaps = 2/234 (1%) Strand=Plus/Plus Query 104328 TTATT--CCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATA 104385 ||||| || ||||||| || | |||| || | |||||||| || ||||| || || Sbjct 898796 TTATTGACCTCCTCTTAATCTCAAGACTAAGTGAAGAGTAGATTCCTTTTGAATGTTGTA 898855 Query 104386 GTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATC 104445 ||||| | ||||||||| ||||| | ||| || ||||| ||||| | || ||||| || Sbjct 898856 ATCAGACAAAGTTCTACCATCTTCCAATTGCTTACCAGCGAAAATCAATCTTTGTTGGTC 898915 Query 104446 AGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGG 104505 ||| || || || ||||| || ||||| || | || ||||| || | ||| ||| | Sbjct 898916 AGGTGGAATACCCTCTTTGTCTTGAATTTTAGACTTGACATTGTCAATGGTGTCGGAGGA 898975 Query 104506 TTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 ||| || || | || |||||||||||||| | ||||| || || || ||||| Sbjct 898976 TTCAACTTCCAAAGTGATAGTCTTACCAGTTAAGGTTTTGACGAAGATTTGCAT 899029 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151398237724788