Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Nakazawaea_20peltata_20[genbank_20GCA_5F001599355.1_202016-03-01]
11 sequences; 11,653,826 total letters
Query= NC_005902.1
Length=186250
Score E
Sequences producing significant alignments: (Bits) Value
seq1 165 1e-35
seq4 114 2e-20
seq7 96.9 4e-15
>seq1
Length=2934271
Score = 165 bits (182), Expect = 1e-35
Identities = 292/422 (69%), Gaps = 19/422 (5%)
Strand=Plus/Plus
Query 6829 ATATGATCTAAATAAATATGAGCATCTCCTAGCGTATGAATAAATTCACCTGGTTTCATA 6888
|| ||||| ||||| | |||||||||||| | |||||||| || || || ||||||
Sbjct 112772 ATGTGATCCAAATACACATGAGCATCTCCCATGGTATGAATGAAATCTCCACAGTTCATA 112831
Query 6889 TCAACAGCTTGAGCAATTAAATATGTTAATAATGCATAAGAAGCTACATTAAAAGGTACA 6948
||| | |||||| || | | || ||||| || || ||| | || ||||| |||
Sbjct 112832 TCACAACATTGAGCGATCATCTTGGTCAATAAAGCGTAGCTAGCAATGTTGAAAGGAACA 112891
Query 6949 CCTAATCCCATATCTGCTGATCTTTGATAACATTGACAAGATAAAATA-------TTGTC 7001
|| ||||||||||| |||||||||||| || ||| || || || |
Sbjct 112892 CCCAATCCCATATCACATGATCTTTGATATAATAAACATGACAATTCCGGTTTCTTTCCC 112951
Query 7002 TATAG--------CATAAAATTGACACAATACATGACATGGAGGTAAAACAGCCTGATCT 7053
| | | |||| |||||||| |||||||||||||| |||||| | ||| |
Sbjct 112952 TCTGGGAAATTCACATAGAATTGACAGAATACATGACATGGTGGTAAAGCCATCTGGGCG 113011
Query 7054 ATATCAGATGGATTCCAAGCAGTCATTAAAATACGTCTATCATTTGGATTTGTTTTTAAT 7113
| ||| | ||||||||||||| |||| | || | | |||| ||||| || |||||
Sbjct 113012 AAATCTGGTGGATTCCAAGCACTCATAATGATTCTACGGTCATAAGGATTAGTCTTTAA- 113070
Query 7114 TTTGTTATAATTATTTGTAA-TTGATC-TATACCCTGACCTTCATAATTAGTATGACAAT 7171
|||| | | | || || ||| || ||| || |||||| ||||| || |||||
Sbjct 113071 CTTGTGAATGATCTCTGCAAGTTGGTCATAT-CCTTGACCTGAATAATCCAGATCACAAT 113129
Query 7172 TTATATAATTAGCTCCAAAATGTCTCCATTGAAACCCATAAATAGGACCTAAATCACCTT 7231
| | || | || || |||||||||||||| |||||||||| || || |||||||| |
Sbjct 113130 CTTTGTATTCGGCACCGAAATGTCTCCATTGGAACCCATAAACCGGTCCCAAATCACCCT 113189
Query 7232 CT 7233
||
Sbjct 113190 CT 113191
>seq4
Length=1221263
Score = 114 bits (126), Expect = 2e-20
Identities = 387/589 (66%), Gaps = 28/589 (5%)
Strand=Plus/Minus
Query 164398 AATTTTGAAGAAATGGGAGTAGGTGGACTAGATCGAGAATTTTCTCTTATTTTCAGACGA 164457
|| |||||||| |||||| | || || ||||| || || ||| ||||||||| ||
Sbjct 1014566 AAGTTTGAAGATATGGGAATTGGAGGTTTAGATACTGAGTTCACTCAGATTTTCAGAAGA 1014507
Query 164458 GCATTTGCTTCTAGA-TCAGTTCCTATC-GAAATAATaaaaaaaTTAGGCTGTAAACATA 164515
|| ||||| || ||| || |||| | ||| | || |||||||||| || |||
Sbjct 1014506 GCCTTTGCCTCGAGAATC--TTCCCCCCAGAATTGATTGAAAAATTAGGTATTAGTCATG 1014449
Query 164516 TAAAAGGAATTTTATTACATGGACCTCCTGGTTGCGGTAAAACATTAATGGCTCGATGCA 164575
| ||||| || | ||| |||||||||| ||| ||||| || || || || || |
Sbjct 1014448 TTAAAGGTATGCTTTTATATGGACCTCCAGGTACTGGTAAGACGTTGATTGCACGTCAAA 1014389
Query 164576 TTGCTCAAGCTTTTAAATCGC----GACCCGTTAAAATTGTTAATGGTCCTGAATTATTG 164631
||| ||| | || ||| || || || || ||||||||||| |||||| | |||
Sbjct 1014388 TTGGA-AAGATGTTGAAT-GCTAATGAACCA--AAGATTGTTAATGGACCTGAAATTTTG 1014333
Query 164632 AACAAATATGTAGGTGAGTCAGAAGCTAATGTTAGAAAGTTGTTTCAGGAGGCTGAAGAA 164691
| ||||| || ||| || || | ||| | |||||| | || || || || |
Sbjct 1014332 AGTAAATACGTTGGTTCTTCGGAGGAGAATATCAGAAAGCTTTTCGCCGATGCCGAGGCC 1014273
Query 164692 GAACAAAAGAAAGCAGGTTTAGCTAGTAAATTACATGTTATTGTTTTTGATGAGATAGAT 164751
||| | |||||| |||| | | || ||| | ||| |||| |||||| | ||
Sbjct 1014272 GAATATAAGAAAAAAGGTGATGAATCTTCTTTGCATATCATTATTTTCGATGAGTTGGAC 1014213
Query 164752 GCTCTTTGCAAAAAACGTGGTGATAATATTATTCATGATGCAGTGGTTAATCA-GTTG-- 164808
| ||| |||| || | ||| || | | | || ||||| | || | ||||
Sbjct 1014212 TCGGTTTTCAAACAAAGAGGTTCTAGAGGTGATGGTACTGGAGTGGCTGATAATGTTGTT 1014153
Query 164809 ------CTTT--CT-AAAATAGATGGTGTAGAATC--CTTAAATAATATTTTAATTGTAG 164857
|||| || ||||| |||||||| | ||| ||| ||||| |||||| | | |
Sbjct 1014152 AATCAACTTTTACTGAAAATGGATGGTGT-GGATCAACTT-AATAACATTTTAGTCATTG 1014095
Query 164858 GTATGACCAACCGACCTGATTTAATTGATGATGCTTTATTACGACCTGGTCGATTAGAAT 164917
| ||||| || || ||||| || ||||| ||| | || || ||||| || || |||
Sbjct 1014094 GAATGACTAATAGAAGAGATTTGATCGATGAGGCTCTTTTGCGTCCTGGACGTTTCGAAG 1014035
Query 164918 TGAAAATAGAAATAGGATTACCCGACAAAGAAGGACGCCTTCAAATTTT 164966
| || | || || ||||| || ||| || || | |||||| ||
Sbjct 1014034 TCCAAGTTGAGATTCATTTACCTGATGAAGCTGGTCGTCGTCAAATCTT 1013986
>seq7
Length=809317
Score = 96.9 bits (106), Expect = 4e-15
Identities = 118/161 (73%), Gaps = 0/161 (0%)
Strand=Plus/Plus
Query 19343 AGATCTTCTAAAATACCTGAAATAGGTGATAAGTTTGCTTCTTTTACTGCTCAAAAAGGC 19402
||| || |||| | ||| |||| |||||||||||||||||| | | |||||||||
Sbjct 676196 AGAACTACTAAGGTTCCTCAAATTGGTGATAAGTTTGCTTCTCGTCACGGTCAAAAAGGT 676255
Query 19403 ACATGTGGTATGATTTATCGTCAAGAAGATATGCCTTTTACTAAAGATGGTATAGTGCCG 19462
|| |||||| | ||| | | |||||||||| ||| || || ||||| || ||
Sbjct 676256 ACTATTGGTATTACTTACAGAAATGAAGATATGCTTTTCACCGCCGAAGGTATGGTTCCA 676315
Query 19463 GATCTTATTATTAACCCACATGCTTTTCCAAGTCGAATGAC 19503
||| | ||||| ||||| || ||| ||||| ||| |||||
Sbjct 676316 GATTTGATTATCAACCCGCACGCTATTCCATCTCGTATGAC 676356
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 595871918067600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |