Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nakazawaea_20peltata_20[genbank_20GCA_5F001599355.1_202016-03-01] 11 sequences; 11,653,826 total letters Query= NC_005902.1 Length=186250 Score E Sequences producing significant alignments: (Bits) Value seq1 165 1e-35 seq4 114 2e-20 seq7 96.9 4e-15 >seq1 Length=2934271 Score = 165 bits (182), Expect = 1e-35 Identities = 292/422 (69%), Gaps = 19/422 (5%) Strand=Plus/Plus Query 6829 ATATGATCTAAATAAATATGAGCATCTCCTAGCGTATGAATAAATTCACCTGGTTTCATA 6888 || ||||| ||||| | |||||||||||| | |||||||| || || || |||||| Sbjct 112772 ATGTGATCCAAATACACATGAGCATCTCCCATGGTATGAATGAAATCTCCACAGTTCATA 112831 Query 6889 TCAACAGCTTGAGCAATTAAATATGTTAATAATGCATAAGAAGCTACATTAAAAGGTACA 6948 ||| | |||||| || | | || ||||| || || ||| | || ||||| ||| Sbjct 112832 TCACAACATTGAGCGATCATCTTGGTCAATAAAGCGTAGCTAGCAATGTTGAAAGGAACA 112891 Query 6949 CCTAATCCCATATCTGCTGATCTTTGATAACATTGACAAGATAAAATA-------TTGTC 7001 || ||||||||||| |||||||||||| || ||| || || || | Sbjct 112892 CCCAATCCCATATCACATGATCTTTGATATAATAAACATGACAATTCCGGTTTCTTTCCC 112951 Query 7002 TATAG--------CATAAAATTGACACAATACATGACATGGAGGTAAAACAGCCTGATCT 7053 | | | |||| |||||||| |||||||||||||| |||||| | ||| | Sbjct 112952 TCTGGGAAATTCACATAGAATTGACAGAATACATGACATGGTGGTAAAGCCATCTGGGCG 113011 Query 7054 ATATCAGATGGATTCCAAGCAGTCATTAAAATACGTCTATCATTTGGATTTGTTTTTAAT 7113 | ||| | ||||||||||||| |||| | || | | |||| ||||| || ||||| Sbjct 113012 AAATCTGGTGGATTCCAAGCACTCATAATGATTCTACGGTCATAAGGATTAGTCTTTAA- 113070 Query 7114 TTTGTTATAATTATTTGTAA-TTGATC-TATACCCTGACCTTCATAATTAGTATGACAAT 7171 |||| | | | || || ||| || ||| || |||||| ||||| || ||||| Sbjct 113071 CTTGTGAATGATCTCTGCAAGTTGGTCATAT-CCTTGACCTGAATAATCCAGATCACAAT 113129 Query 7172 TTATATAATTAGCTCCAAAATGTCTCCATTGAAACCCATAAATAGGACCTAAATCACCTT 7231 | | || | || || |||||||||||||| |||||||||| || || |||||||| | Sbjct 113130 CTTTGTATTCGGCACCGAAATGTCTCCATTGGAACCCATAAACCGGTCCCAAATCACCCT 113189 Query 7232 CT 7233 || Sbjct 113190 CT 113191 >seq4 Length=1221263 Score = 114 bits (126), Expect = 2e-20 Identities = 387/589 (66%), Gaps = 28/589 (5%) Strand=Plus/Minus Query 164398 AATTTTGAAGAAATGGGAGTAGGTGGACTAGATCGAGAATTTTCTCTTATTTTCAGACGA 164457 || |||||||| |||||| | || || ||||| || || ||| ||||||||| || Sbjct 1014566 AAGTTTGAAGATATGGGAATTGGAGGTTTAGATACTGAGTTCACTCAGATTTTCAGAAGA 1014507 Query 164458 GCATTTGCTTCTAGA-TCAGTTCCTATC-GAAATAATaaaaaaaTTAGGCTGTAAACATA 164515 || ||||| || ||| || |||| | ||| | || |||||||||| || ||| Sbjct 1014506 GCCTTTGCCTCGAGAATC--TTCCCCCCAGAATTGATTGAAAAATTAGGTATTAGTCATG 1014449 Query 164516 TAAAAGGAATTTTATTACATGGACCTCCTGGTTGCGGTAAAACATTAATGGCTCGATGCA 164575 | ||||| || | ||| |||||||||| ||| ||||| || || || || || | Sbjct 1014448 TTAAAGGTATGCTTTTATATGGACCTCCAGGTACTGGTAAGACGTTGATTGCACGTCAAA 1014389 Query 164576 TTGCTCAAGCTTTTAAATCGC----GACCCGTTAAAATTGTTAATGGTCCTGAATTATTG 164631 ||| ||| | || ||| || || || || ||||||||||| |||||| | ||| Sbjct 1014388 TTGGA-AAGATGTTGAAT-GCTAATGAACCA--AAGATTGTTAATGGACCTGAAATTTTG 1014333 Query 164632 AACAAATATGTAGGTGAGTCAGAAGCTAATGTTAGAAAGTTGTTTCAGGAGGCTGAAGAA 164691 | ||||| || ||| || || | ||| | |||||| | || || || || | Sbjct 1014332 AGTAAATACGTTGGTTCTTCGGAGGAGAATATCAGAAAGCTTTTCGCCGATGCCGAGGCC 1014273 Query 164692 GAACAAAAGAAAGCAGGTTTAGCTAGTAAATTACATGTTATTGTTTTTGATGAGATAGAT 164751 ||| | |||||| |||| | | || ||| | ||| |||| |||||| | || Sbjct 1014272 GAATATAAGAAAAAAGGTGATGAATCTTCTTTGCATATCATTATTTTCGATGAGTTGGAC 1014213 Query 164752 GCTCTTTGCAAAAAACGTGGTGATAATATTATTCATGATGCAGTGGTTAATCA-GTTG-- 164808 | ||| |||| || | ||| || | | | || ||||| | || | |||| Sbjct 1014212 TCGGTTTTCAAACAAAGAGGTTCTAGAGGTGATGGTACTGGAGTGGCTGATAATGTTGTT 1014153 Query 164809 ------CTTT--CT-AAAATAGATGGTGTAGAATC--CTTAAATAATATTTTAATTGTAG 164857 |||| || ||||| |||||||| | ||| ||| ||||| |||||| | | | Sbjct 1014152 AATCAACTTTTACTGAAAATGGATGGTGT-GGATCAACTT-AATAACATTTTAGTCATTG 1014095 Query 164858 GTATGACCAACCGACCTGATTTAATTGATGATGCTTTATTACGACCTGGTCGATTAGAAT 164917 | ||||| || || ||||| || ||||| ||| | || || ||||| || || ||| Sbjct 1014094 GAATGACTAATAGAAGAGATTTGATCGATGAGGCTCTTTTGCGTCCTGGACGTTTCGAAG 1014035 Query 164918 TGAAAATAGAAATAGGATTACCCGACAAAGAAGGACGCCTTCAAATTTT 164966 | || | || || ||||| || ||| || || | |||||| || Sbjct 1014034 TCCAAGTTGAGATTCATTTACCTGATGAAGCTGGTCGTCGTCAAATCTT 1013986 >seq7 Length=809317 Score = 96.9 bits (106), Expect = 4e-15 Identities = 118/161 (73%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 19343 AGATCTTCTAAAATACCTGAAATAGGTGATAAGTTTGCTTCTTTTACTGCTCAAAAAGGC 19402 ||| || |||| | ||| |||| |||||||||||||||||| | | ||||||||| Sbjct 676196 AGAACTACTAAGGTTCCTCAAATTGGTGATAAGTTTGCTTCTCGTCACGGTCAAAAAGGT 676255 Query 19403 ACATGTGGTATGATTTATCGTCAAGAAGATATGCCTTTTACTAAAGATGGTATAGTGCCG 19462 || |||||| | ||| | | |||||||||| ||| || || ||||| || || Sbjct 676256 ACTATTGGTATTACTTACAGAAATGAAGATATGCTTTTCACCGCCGAAGGTATGGTTCCA 676315 Query 19463 GATCTTATTATTAACCCACATGCTTTTCCAAGTCGAATGAC 19503 ||| | ||||| ||||| || ||| ||||| ||| ||||| Sbjct 676316 GATTTGATTATCAACCCGCACGCTATTCCATCTCGTATGAC 676356 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 595871918067600