Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nakazawaea_20peltata_20[genbank_20GCA_5F001599355.1_202016-03-01] 11 sequences; 11,653,826 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq3 113 7e-21 seq1 96.9 5e-16 >seq3 Length=1357868 Score = 113 bits (124), Expect = 7e-21 Identities = 177/252 (70%), Gaps = 1/252 (0%) Strand=Plus/Plus Query 16448 AGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGT 16507 |||||| | |||| ||||||||||| ||||| |||||||||||| | | | ||| | Sbjct 802477 AGATCT-TGAGAGACAACATCCAAGGTATCACTAAGCCAGCTATCAGAAGATTAGCTAGA 802535 Query 16508 CGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAG 16567 | ||||| ||||||||| |||||| ||| |||| ||||| | | || |||||| Sbjct 802536 AGAGGTGGTGTCAAGCGTATCTCTGCTTTGATCTACGAAGAAGTCAGAACCGTCTTGAAG 802595 Query 16568 ATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAG 16627 | ||| | ||| ||| ||| ||||| | || ||||||||||| || | ||| Sbjct 802596 ACTTTCTTGGAGAACGTCATCAGAGATGCCGTTACTTACACCGAGCACGCCAAGAGAAAG 802655 Query 16628 ACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGT 16687 || || || || ||||| | || || || ||||| | ||||| | | | |||||| Sbjct 802656 ACCGTTACTTCTTTGGATGTTGTTTACGCCTTGAAGAGACAAGGTAGAACCTTGTATGGT 802715 Query 16688 TTTGGAAGTTAA 16699 || || ||||| Sbjct 802716 TTCGGTGGTTAA 802727 >seq1 Length=2934271 Score = 96.9 bits (106), Expect = 5e-16 Identities = 169/245 (69%), Gaps = 1/245 (0%) Strand=Plus/Plus Query 16448 AGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGT 16507 |||||| | |||| ||||||||||| ||||| |||||||| ||| | | | ||| | Sbjct 124198 AGATCT-TGAGAGACAACATCCAAGGTATCACTAAGCCAGCCATCAGAAGATTAGCTAGA 124256 Query 16508 CGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAG 16567 | ||||| ||||||||| | |||| ||| | || || || | | || |||||| Sbjct 124257 AGAGGTGGTGTCAAGCGTATTTCTGCTTTGATTTACGAGGAAGTCAGAACCGTCTTGAAG 124316 Query 16568 ATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAG 16627 | |||| | ||| ||||||| ||||| | || || ||||||||||| | ||| Sbjct 124317 ACCTTCTTGGAGAACGTTATCAGAGATGCCGTTACTTACACTGAGCACGCTAAGAGAAAG 124376 Query 16628 ACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGT 16687 || || || || |||| | || || || ||||| | ||||| | | | |||||| Sbjct 124377 ACCGTTACTTCTTTGGACGTTGTTTACGCTTTGAAGAGACAAGGTAGAACCTTGTATGGT 124436 Query 16688 TTTGG 16692 || || Sbjct 124437 TTCGG 124441 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79075189942623