Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nakazawaea_20peltata_20[genbank_20GCA_5F001599355.1_202016-03-01] 11 sequences; 11,653,826 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq1 167 6e-36 seq8 149 2e-30 >seq1 Length=2934271 Score = 167 bits (184), Expect = 6e-36 Identities = 517/789 (66%), Gaps = 16/789 (2%) Strand=Plus/Plus Query 363547 TTCACGCACGCCACGCCAACAATGTACAATGCTGGAACTCGTAATCCACAGATGTCTTCT 363606 ||||| || || | ||||| ||| ||| ||||| |||| | ||||| ||||||||| Sbjct 85328 TTCACCCATGCTTCTCCAACTTTGTTCAACGCTGGTACTCCACACCCACAAATGTCTTCT 85387 Query 363607 TGCTTTCTTCTAAAAATGAAGGACGATTCCATCGAGGGTATCTTTGACACACTTAAGAAT 363666 || || ||| | |||||||| ||||| ||||| ||||| | |||||| | || | Sbjct 85388 TGTTTCCTTGTTGCCATGAAGGAGGATTCTATCGAAGGTATTTATGACACTTTGAAAGAG 85447 Query 363667 TGTGCTCTTATTTCCAAGAATGCAGGCGGAATTGGTGTATCGATCCACAATGTTCGTG-C 363725 ||||| | |||||||||| ||| || || |||||| | |||||||| || | | | Sbjct 85448 TGTGCCTTGATTTCCAAGACTGCCGGTGGTATTGGTTTGCATATCCACAACATTAGAGCC 85507 Query 363726 ACAGAACAGTTACATTCGCGGCACAGGGGGATAC-TCGAATGGGCTGGTTCCCATGCTTC 363784 || | ||||||| ||| || || ||| || || || | |||| ||| || Sbjct 85508 ACTG-GTTCTTACATTGCCGGTACTAACGG-TACTTCCAACGGTATTATTCCAATGGTTA 85565 Query 363785 GTGTGTTTGACAATACTGCGAGGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGGGGCGT 363844 | || || |||| ||||| | ||||||||||| ||||| ||| | ||| || | Sbjct 85566 GAGTCTTCAACAACACTGCTCGTTACGTCGACCAAGGTGGTAACAAGAGACCAGGTGCCT 85625 Query 363845 TTGCTATGTATCTCGAGCCTCATCATGCCGATATTTTTGAGTTTCTTGAGCTCCGGAA-A 363903 |||| |||| | ||||| |||||||| || || || || |||| || | || | Sbjct 85626 TTGCCTTGTACATTGAGCCATGGCATGCCGACATCTTCGACTTCATTGACATCAGAAAGA 85685 Query 363904 AACACGGGAAAAGAGGAATTGCGTGCACGTGATCTGTTCTATGCACTTTGGGTTTCTGAC 363963 | ||| || || || ||| | | || | ||| ||||| || | ||| | | || Sbjct 85686 ATCAC-GGTAAGGAAGAAATTAGAGCCAGAGATTTGTTCCCAGCTTTATGGATCCCAGAT 85744 Query 363964 CATTTTATGAAGCGCGT-GGAGGCAGGTAAGAATTGGTCACTCTTTTGCCCACACGAATG 364022 || ||| | | || | | | ||| ||||| | | || | ||| | ||| Sbjct 85745 TTGTTCATGCAAAGAGTCGAAAAGAACCAAG-ATTGGACCTTGTTCTCTCCAAATGAAGC 85803 Query 364023 TCCAGGTCTTTCCGATGTATGGGGTGACGACTATGTTGCTCTATACGAAAAGTATGAATC 364082 ||||||| | |||| || | ||||| || | ||||| | ||||| || || || Sbjct 85804 TCCAGGTTTAGCCGAGGTTTACGGTGATGAGTTCATTGCTTTGTACGAGAAATACGA--- 85860 Query 364083 GGAGGGAAAGGCTCGTAAGACAA----TTCCCGCACAGAAGCTATGGTTTGCCATCATGG 364138 || ||| | | | |||||| | || ||||| | |||| |||| ||| Sbjct 85861 -GAAAGAAGGCCGTGGTAGACAAACTGTCAAGGCCCAGAAATTGTGGTACTCCATTTTGG 85919 Query 364139 ATTCGCAGATTGAGACAGGAACACCCTATATGTTGTACAAAGATTCGTGCAACCGCAAGT 364198 | | || | |||||| || || || | ||||||||||||||| | || ||| ||| Sbjct 85920 AGGCTCAAACTGAGACCGGTACTCCATTCATGTTGTACAAAGATGCTTGTAACAAGAAGA 85979 Query 364199 CCAACCAGCAGCACCTTGGTACAATTCAGCAGAGCAACCTATGTACCGAGATTATTGAAT 364258 ||||||| || || | |||| || || ||| | ||| |||||| | |||| Sbjct 85980 CCAACCAAAAGAACTTGGGTATTATCAAGTCTTCTAACTTGTGTTGTGAGATTGTCGAAT 86039 Query 364259 ACACCGCTCCCGACGAGACTGCCGTATGTAACCTTGCGTCGATCGCGCTTCCGGCGTTTG 364318 | | | || || || || ||||| |||||| | || || || || | || || |||| Sbjct 86040 ATTCTGACCCTGAAGAAACAGCCGTTTGTAACTTGGCCTCTATTGCCTTACCTGCCTTTG 86099 Query 364319 TAAAAGATG 364327 || |||||| Sbjct 86100 TAGAAGATG 86108 >seq8 Length=648860 Score = 149 bits (164), Expect = 2e-30 Identities = 486/739 (66%), Gaps = 22/739 (3%) Strand=Plus/Minus Query 363562 CCAACAATGTACAATGCTGGAACTCGTAATCCACAGATGTCTTCTTGCTTTCTTCTAAAA 363621 || ||| | | |||| |||| |||| | || ||| | || ||||| ||| | | Sbjct 32805 CCTACACTTTTCAATTCTGGTACTCTGAGACCCCAGTTACTGTCATGCTTCCTTGTGGCA 32746 Query 363622 ATGAAGGACGATTCCATCGAGGGTATCTTTGACACACTTAAGAATTGTGCTCTTATTTCC 363681 |||||||| |||||||||||||| || ||||| || || ||| | || || | || || Sbjct 32745 ATGAAGGATGATTCCATCGAGGGGATTTTTGATACGCTCAAGGAGTGCGCGATGATCTCT 32686 Query 363682 AAGAATGCAGGCGGAATTGG--TGTATCGATCCACAATGTTCGTGC-ACAGAACAGTTAC 363738 || |||||||| || ||||| || || || |||||| | | | || | |||| | Sbjct 32685 AAAAATGCAGGAGGTATTGGAATGCAT--ATTCACAATATCAGATCGACTGGG-AGTTTC 32629 Query 363739 ATTCGCGGCAC-AGGGGGATACTCGAATGGGCTGGTTCCCATGCTTCGTGTGTTTGACAA 363797 || || || | |||| ||| |||||| | | || ||| | | ||||| |||| Sbjct 32628 ATCTCTGGTACTAATGGGAC-CTCTAATGGGATTATCCCGATGTTGAGAGTGTTCAACAA 32570 Query 363798 TACTGCGAGGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGGGGCGTTTGCTATGTATCT 363857 | |||| || || || || || || || ||| | || || | || ||||| | Sbjct 32569 TGCTGCCAGATATGTAGATCAAGGAGGTAATAAGAGACCTGGTGCTATCGCCGTGTATTT 32510 Query 363858 CGAGCCTCATCATGCCGATATTTTTGAGTTTCTTGAGCTCCGGAAAAA-CACGGGAAAAG 363916 || || ||| ||||||||||| || ||| | |||| ||||| || |||||| | Sbjct 32509 GGAACCATGGCATAATGATATTTTTGATTTCATTGGGATCCGTAAAAATCATGGGAAA-G 32451 Query 363917 AGGAATTGCGTGCACGTGATCTGTTCTATGCACTTTGGGTTTCTGACCATTTTATGAAGC 363976 ||||| | | || | ||| ||||| | | ||||| |||| |||||||| Sbjct 32450 AGGAAATTAGAGCTAGGGATTTGTTCCCTCTGTTGTGGGTGCCTGATTTATTTATGAAAA 32391 Query 363977 GCGTGGAGGCAGGTAAGAAT-TGGTCACTCTTTTGCCCACACGAATGTCCAGGTCTTTCC 364035 | ||| ||| | | ||| ||| ||||| | || | ||| ||||||| | ||| Sbjct 32390 GAGTG-AGGAATGACCAAATGTGGAGTCTCTTCTCTCCTAATGAAACTCCAGGTTTATCC 32332 Query 364036 GATG--TATGGGGTGACGACTATGTTGCTCTATACGAAAAGTATGAATCGGAGGGAAAGG 364093 | ||||| || || | || ||||| |||||||| |||||| ||| || | Sbjct 32331 AGTACTTATGGACTG--GAATTTGAAGCTCTTTACGAAAAATATGAAAACCTGGGGAAAG 32274 Query 364094 CTCGTAAGAC---AATTCCCGCACAGAAGCTATGGTTTGCCATCATGGATTCGCAGATTG 364150 | ||||| ||| || ||||| | |||| |||||| | || ||||||| | Sbjct 32273 CA---AAGACTCAAATCAGAGCTCAGAAATTGTGGTCCGCCATCTTAGAAGCGCAGATCG 32217 Query 364151 AGACAGGAACACCCTATATGTTGTACAAAGATTCGTGCAACCGCAAGTCCAACCAGCAGC 364210 ||||||| || || | |||| | ||||||||| ||| || | || || ||||| || Sbjct 32216 AGACAGGTACTCCATTTATGCTCTACAAAGATCTGTGTAATCTGAAATCGAACCAAAAGA 32157 Query 364211 ACCTTGGTACAATTCAGCAGAGCAACCTATGTACCGAGATTATTGAATACACCGCTCCCG 364270 | | || || ||| | ||| ||||| |||||| ||||||| | | | Sbjct 32156 ATTTGGGGACTATTAAATCTTCCAATTTATGTTGTGAGATTGTTGAATATTCAGATGAGA 32097 Query 364271 ACGAGACTGCCGTATGTAA 364289 | ||||||||||||||||| Sbjct 32096 AGGAGACTGCCGTATGTAA 32078 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303353416308602