Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nakazawaea_20peltata_20[genbank_20GCA_5F001599355.1_202016-03-01] 11 sequences; 11,653,826 total letters Query= NC_007383.1 Length=134394 Score E Sequences producing significant alignments: (Bits) Value seq5 140 3e-28 >seq5 Length=1057341 Score = 140 bits (154), Expect = 3e-28 Identities = 172/235 (73%), Gaps = 0/235 (0%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 |||||| | || || ||||| |||||||| || | || || | ||||| || || | Sbjct 899029 ATGCAAATCTTCGTCAAAACCTTAACTGGTAAGACTATCACTTTGGAAGTTGAATCCTCC 898970 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 |||||||| || | ||||| || ||| |||||||| || || || || || ||| Sbjct 898969 GACACCATTGACAATGTCAAGTCTAAAATTCAAGACAAAGAGGGTATTCCACCTGACCAA 898910 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 || ||| |||||| || || |||||| | ||||||| |||| | ||||| ||| Sbjct 898909 CAAAGATTGATTTTCGCTGGTAAGCAATTGGAAGATGGTAGAACTTTGTCTGATTACAAC 898850 Query 24171 ATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGGACTATAAT 24225 |||||||| |||||||| |||| ||||| || ||||| |||||||| | ||||| Sbjct 898849 ATTCAAAAGGAATCTACTCTTCACTTAGTCTTGAGATTAAGAGGAGGTCAATAAT 898795 Score = 125 bits (138), Expect = 6e-24 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 |||||| | || || || || || || || || | |||||| | || || ||| | | Sbjct 899485 ATGCAAATTTTCGTCAAGACTTTGACCGGTAAGACCATTACCCTTGAGGTTGAGTCTTCC 899426 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 |||||||| || | || || |||||| ||||| ||||| || ||||| |||||| Sbjct 899425 GACACCATTGACAATGTTAAGTCTAAGATTCAAGACAAGGAAGGTATTCCTCCAGATCAA 899366 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 || ||| |||||| | || |||||| | || || | ||||| | | || || ||| Sbjct 899365 CAAAGATTGATTTTTGCTGGTAAGCAATTAGAGGACGGCAGAACCTTGTCTGACTACAAC 899306 Query 24171 ATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGG 24217 |||||||| |||||||| |||| || || |||||||||||||| || Sbjct 899305 ATTCAAAAGGAATCTACCCTTCACTTGGTCTTAAGATTGAGAGGTGG 899259 Score = 87.8 bits (96), Expect = 2e-12 Identities = 158/231 (68%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 23987 CAAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGC 24046 ||| |||||| | || || || || | || || || | |||||| | ||||| || | Sbjct 274222 CAAGATGCAAATTTTCGTTAAGACCCTTACAGGTAAGACCATTACCTTGGAAGTTGAATC 274281 Query 24047 CAACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGA 24106 ||||| || || | ||||| ||||| ||||| ||||| || || || || Sbjct 274282 TTCTGACACTATTGACAACGTCAAGTCCAAGATCCAAGACAAGGAAGGTATCCCACCTGA 274341 Query 24107 TCAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTA 24166 ||||| ||| |||| | | || |||||| | || || | ||||| | | ||| || Sbjct 274342 CCAACAAAGATTGATCTTTGCTGGTAAGCAATTAGAGGACGGCAGAACCTTGTCCGACTA 274401 Query 24167 TAACATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGG 24217 ||||| ||||| ||||| || | || || || || ||||||||||| || Sbjct 274402 CAACATCCAAAAGGAATCCACTTTGCACTTGGTTTTGAGATTGAGAGGTGG 274452 Score = 87.8 bits (96), Expect = 2e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 23990 AATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAA 24049 ||||||| | || || || || | ||||| || | |||||| | || || || || Sbjct 899714 AATGCAAATCTTCGTTAAGACTCTTACTGGTAAGACTATTACCCTTGAGGTTGAATCCTC 899655 Query 24050 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCA 24109 |||||||| || | ||||| ||||| || || ||||| || || || || || Sbjct 899654 TGACACCATTGACAACGTCAAGTCCAAGATCCAAGATAAGGAAGGTATTCCACCTGACCA 899595 Query 24110 ACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAA 24169 ||| ||| | || | | || |||||| | ||||||| |||| | ||| || || Sbjct 899594 ACAAAGATTAATCTTTGCTGGTAAGCAATTGGAAGATGGTAGAACTTTGTCCGACTACAA 899535 Query 24170 CATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGG 24217 ||| ||||| ||||| || | || || || || ||||||||||| || Sbjct 899534 CATCCAAAAGGAATCCACCTTGCACTTGGTTTTGAGATTGAGAGGTGG 899487 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 |||||| | ||||| || || || ||||| || | || || | ||||| || | Sbjct 899257 ATGCAAATCTTTGTTAAGACTTTGACTGGTAAGACTATCACTTTGGAAGTTGAATCTTCT 899198 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||||| || || | || || || ||| |||||||| || || || || || ||| Sbjct 899197 GACACTATTGACAATGTTAAGTCCAAAATTCAAGACAAAGAGGGTATTCCACCTGACCAA 899138 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGC-GATTATAA 24169 || ||| | || | | || |||||| | ||||||| |||| | | | | || || || Sbjct 899137 CAAAGATTAATCTTTGCTGGTAAGCAATTGGAAGATGGTAGAA-CTTTATCTGACTACAA 899079 Query 24170 CATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGG 24217 ||| ||||| ||||| || | || ||||| || ||||||||||| || Sbjct 899078 CATCCAAAAGGAATCCACTTTACACTTAGTTTTGAGATTGAGAGGTGG 899031 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429935942361705