Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Nakazawaea_20peltata_20[genbank_20GCA_5F001599355.1_202016-03-01]
11 sequences; 11,653,826 total letters
Query= NC_008168.1
Length=104710
Score E
Sequences producing significant alignments: (Bits) Value
seq5 118 7e-22
seq8 107 1e-18
>seq5
Length=1057341
Score = 118 bits (130), Expect = 7e-22
Identities = 169/237 (71%), Gaps = 1/237 (0%)
Strand=Plus/Plus
Query 38082 CAATCATT-ACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATT 38140
|||| ||| ||| ||||| || | ||| || || |||||||| ||||||||||| ||
Sbjct 898793 CAATTATTGACCTCCTCTTAATCTCAAGACTAAGTGAAGAGTAGATTCCTTTTGAATGTT 898852
Query 38141 GTAATCAGACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTG 38200
||||||||||||| | | || || ||||| || || || || || | | ||||||
Sbjct 898853 GTAATCAGACAAAGTTCTACCATCTTCCAATTGCTTACCAGCGAAAATCAATCTTTGTTG 898912
Query 38201 ATCGGAGGGGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCC 38260
|| | || | || |||||||| |||||| ||| ||||| | | || ||
Sbjct 898913 GTCAGGTGGAATACCCTCTTTGTCTTGAATTTTAGACTTGACATTGTCAATGGTGTCGGA 898972
Query 38261 ACTTTCAACTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317
||||||||| || || ||||| ||||| || |||||||| ||||| || |||||
Sbjct 898973 GGATTCAACTTCCAAAGTGATAGTCTTACCAGTTAAGGTTTTGACGAAGATTTGCAT 899029
Score = 116 bits (128), Expect = 2e-21
Identities = 163/229 (71%), Gaps = 0/229 (0%)
Strand=Plus/Plus
Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148
||||||||||||| | ||| || || || | |||| |||||||| || ||||| ||||
Sbjct 899029 TACCACCTCTCAATCTCAAAACTAAGTGTAAAGTGGATTCCTTTTGGATGTTGTAGTCAG 899088
Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208
| ||| | | || || ||||| || || ||||| |||| | |||||| || | |
Sbjct 899089 ATAAAGTTCTACCATCTTCCAATTGCTTACCAGCAAAGATTAATCTTTGTTGGTCAGGTG 899148
Query 38209 GGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAA 38268
| | || |||||||| |||||| ||| ||||| | | ||| || | |||||
Sbjct 899149 GAATACCCTCTTTGTCTTGAATTTTGGACTTAACATTGTCAATAGTGTCAGAAGATTCAA 899208
Query 38269 CTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317
|||| || || ||||| ||||| ||||| || || || || || |||||
Sbjct 899209 CTTCCAAAGTGATAGTCTTACCAGTCAAAGTCTTAACAAAGATTTGCAT 899257
Score = 111 bits (122), Expect = 1e-19
Identities = 163/231 (71%), Gaps = 0/231 (0%)
Strand=Plus/Minus
Query 38090 ACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGA 38149
|||||||||||| | ||| ||||| || | |||| |||||||| || ||||| || ||
Sbjct 274453 ACCACCTCTCAATCTCAAAACCAAGTGCAAAGTGGATTCCTTTTGGATGTTGTAGTCGGA 274394
Query 38150 CAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGG 38209
||| | |||| |||||||| || || ||||| || | | |||||| || | ||
Sbjct 274393 CAAGGTTCTGCCGTCCTCTAATTGCTTACCAGCAAAGATCAATCTTTGTTGGTCAGGTGG 274334
Query 38210 GACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAAC 38269
|| ||||| ||||| || || ||| || || | | ||| || | ||||||
Sbjct 274333 GATACCTTCCTTGTCTTGGATCTTGGACTTGACGTTGTCAATAGTGTCAGAAGATTCAAC 274274
Query 38270 TTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATGTT 38320
||| || ||||| || ||||| || | ||| || ||||| || ||||| ||
Sbjct 274273 TTCCAAGGTAATGGTCTTACCTGTAAGGGTCTTAACGAAAATTTGCATCTT 274223
Score = 111 bits (122), Expect = 1e-19
Identities = 162/229 (71%), Gaps = 0/229 (0%)
Strand=Plus/Plus
Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148
||||||||||||| | || ||||| ||||| || ||||||||||| ||||| ||||
Sbjct 899257 TACCACCTCTCAATCTTAAGACCAAGTGAAGGGTAGATTCCTTTTGAATGTTGTAGTCAG 899316
Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208
|||| | |||| |||||||| || || ||||| || | | ||||||||| | |
Sbjct 899317 ACAAGGTTCTGCCGTCCTCTAATTGCTTACCAGCAAAAATCAATCTTTGTTGATCTGGAG 899376
Query 38209 GGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAA 38268
| | ||||| ||||| ||| || ||| ||||| | | || || | ||||
Sbjct 899377 GAATACCTTCCTTGTCTTGAATCTTAGACTTAACATTGTCAATGGTGTCGGAAGACTCAA 899436
Query 38269 CTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317
| || | ||||| || ||||| ||||| || || ||||| || |||||
Sbjct 899437 CCTCAAGGGTAATGGTCTTACCGGTCAAAGTCTTGACGAAAATTTGCAT 899485
>seq8
Length=648860
Score = 107 bits (118), Expect = 1e-18
Identities = 163/232 (70%), Gaps = 0/232 (0%)
Strand=Plus/Plus
Query 38090 ACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGA 38149
|||||||||||| | ||| ||||| || | ||| ||||||||| || ||||| |||||
Sbjct 616581 ACCACCTCTCAATCTCAAGACCAAGTGCAAGGTGGACTCCTTTTGGATGTTGTAGTCAGA 616640
Query 38150 CAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGG 38209
|||| | | || || ||||| || || ||||| || | | |||||| || | ||
Sbjct 616641 CAAAGTTCTACCATCCTCCAATTGCTTACCAGCAAAGATCAATCTTTGTTGGTCAGGTGG 616700
Query 38210 GACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAAC 38269
|| || || ||||| || || ||| || || | | || || | ||||||
Sbjct 616701 GATACCCTCCTTGTCTTGGATCTTGGACTTGACGTTGTCAATGGTGTCAGAAGATTCAAC 616760
Query 38270 TTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATGTTT 38321
||| || ||||| || ||||| ||||| || || ||||| || ||||| |||
Sbjct 616761 TTCCAAGGTAATGGTCTTACCTGTCAAAGTCTTAACGAAAATTTGCATCTTT 616812
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 334947155096141
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |