Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nakazawaea_20peltata_20[genbank_20GCA_5F001599355.1_202016-03-01] 11 sequences; 11,653,826 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq5 145 7e-30 seq8 107 2e-18 >seq5 Length=1057341 Score = 145 bits (160), Expect = 7e-30 Identities = 173/230 (75%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| ||||| ||||||||||| ||||| | ||||| | ||||| || || ||| Sbjct 899257 ATGCAAATCTTTGTTAAGACTTTGACTGGTAAGACTATCACTTTGGAAGTTGAATCTTCT 899198 Query 25059 GACACTATCGAGTCACTG--AAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115 |||||||| || || || ||| | |||| ||| |||||||| || |||||||||||| Sbjct 899197 GACACTATTGA--CAATGTTAAGTCCAAAATTCAA-GACAAAGAGGGTATTCCACCTGAC 899141 Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTAC 25175 ||||| | | || ||||| || || ||||| ||||||| | | ||| | || ||| Sbjct 899140 CAACAAAGATTAATCTTTGCTGGTAAGCAATTGGAAGATGGTAGAACTTTATCTGACTAC 899081 Query 25176 AATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 || || ||||| |||||||| |||| ||||| | || | ||||| || Sbjct 899080 AACATCCAAAAGGAATCCACTTTACACTTAGTTTTGAGATTGAGAGGTGG 899031 Score = 141 bits (156), Expect = 8e-29 Identities = 182/245 (74%), Gaps = 7/245 (3%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| || || || || || || ||||| | ||||| | ||||| || || || Sbjct 899029 ATGCAAATCTTCGTCAAAACCTTAACTGGTAAGACTATCACTTTGGAAGTTGAATCCTCC 898970 Query 25059 GACACTATCGAGTCACTG--AAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115 ||||| || || || || ||| | |||| ||| |||||||| || |||||||||||| Sbjct 898969 GACACCATTGA--CAATGTCAAGTCTAAAATTCAA-GACAAAGAGGGTATTCCACCTGAC 898913 Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTAC 25175 ||||| | | ||||| || || || ||||| ||||||| | | ||| || |||||| Sbjct 898912 CAACAAAGATTGATTTTCGCTGGTAAGCAATTGGAAGATGGTAGAACTTTGTCTGATTAC 898853 Query 25176 AATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG-AAATTATTA 25234 || |||||||| ||||| || || || ||||| | || |||||||||| ||| ||| Sbjct 898852 AACATTCAAAAGGAATCTACTCTTCACTTAGTCTTGAGATTAAGAGGAGGTCAATAATTG 898793 Query 25235 TACTA 25239 ||||| Sbjct 898792 TACTA 898788 Score = 114 bits (126), Expect = 1e-20 Identities = 166/230 (72%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| || || ||||||||||||||||| |||| || | || || ||||| || Sbjct 899485 ATGCAAATTTTCGTCAAGACTTTGACCGGTAAGACCATTACCCTTGAGGTTGAGTCTTCC 899426 Query 25059 GACACTATCGAGTCACTG--AAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115 ||||| || || || || ||| | || | ||| ||||| ||||| ||||| || || Sbjct 899425 GACACCATTGA--CAATGTTAAGTCTAAGATTCA-AGACAAGGAAGGTATTCCTCCAGAT 899369 Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTAC 25175 ||||| | | |||||||| || || |||||||| || | | || || || ||| Sbjct 899368 CAACAAAGATTGATTTTTGCTGGTAAGCAATTAGAGGACGGCAGAACCTTGTCTGACTAC 899309 Query 25176 AATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 || |||||||| ||||| || || || || || |||| | ||||| || Sbjct 899308 AACATTCAAAAGGAATCTACCCTTCACTTGGTCTTAAGATTGAGAGGTGG 899259 Score = 113 bits (124), Expect = 4e-20 Identities = 145/200 (73%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 24996 ACAATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCG 25055 ||||||||||| || || |||||| | || ||||| | || || | || || || || Sbjct 899716 ACAATGCAAATCTTCGTTAAGACTCTTACTGGTAAGACTATTACCCTTGAGGTTGAATCC 899657 Query 25056 TCTGACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115 |||||||| || || | ||| || ||| || || ||||| |||||||||||| Sbjct 899656 TCTGACACCATTGACAACGTCAAGTCCAAGATCCAAGATAAGGAAGGTATTCCACCTGAC 899597 Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTAC 25175 ||||| | | || ||||| || || ||||| ||||||| | | ||| || ||| ||| Sbjct 899596 CAACAAAGATTAATCTTTGCTGGTAAGCAATTGGAAGATGGTAGAACTTTGTCCGACTAC 899537 Query 25176 AATATTCAAAAAGAATCCAC 25195 || || ||||| |||||||| Sbjct 899536 AACATCCAAAAGGAATCCAC 899517 Score = 104 bits (114), Expect = 2e-17 Identities = 141/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| || || ||||| | || ||||| |||| || | ||||| || || ||| Sbjct 274226 ATGCAAATTTTCGTTAAGACCCTTACAGGTAAGACCATTACCTTGGAAGTTGAATCTTCT 274285 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 |||||||| || | ||| || ||| ||||| ||||| || |||||||||||| Sbjct 274286 GACACTATTGACAACGTCAAGTCCAAGATCCAAGACAAGGAAGGTATCCCACCTGACCAA 274345 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 || | | || ||||| || || |||||||| || | | || || ||| ||||| Sbjct 274346 CAAAGATTGATCTTTGCTGGTAAGCAATTAGAGGACGGCAGAACCTTGTCCGACTACAAC 274405 Query 25179 ATTCAAAAAGAATCCAC 25195 || ||||| |||||||| Sbjct 274406 ATCCAAAAGGAATCCAC 274422 >seq8 Length=648860 Score = 107 bits (118), Expect = 2e-18 Identities = 142/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| || || ||||||||||| ||||| |||| || | ||||| || || ||| Sbjct 616808 ATGCAAATTTTCGTTAAGACTTTGACAGGTAAGACCATTACCTTGGAAGTTGAATCTTCT 616749 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| || || | ||| || ||| ||||| || || || |||||||||||| Sbjct 616748 GACACCATTGACAACGTCAAGTCCAAGATCCAAGACAAGGAGGGTATCCCACCTGACCAA 616689 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 || | | || ||||| || || ||||| || |||| | | ||| || || ||||| Sbjct 616688 CAAAGATTGATCTTTGCTGGTAAGCAATTGGAGGATGGTAGAACTTTGTCTGACTACAAC 616629 Query 25179 ATTCAAAAAGAATCCAC 25195 || ||||| || ||||| Sbjct 616628 ATCCAAAAGGAGTCCAC 616612 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433327941906965