Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nakazawaea_20peltata_20[genbank_20GCA_5F001599355.1_202016-03-01] 11 sequences; 11,653,826 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq5 181 2e-40 seq8 172 1e-37 >seq5 Length=1057341 Score = 181 bits (200), Expect = 2e-40 Identities = 168/213 (79%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 68249 CAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATC 68308 ||| |||||||| | ||||| || ||||||||||| || ||||| | || || || || Sbjct 274438 CAAAACCAAGTGCAAAGTGGATTCCTTTTGGATGTTGTAGTCGGACAAGGTTCTGCCGTC 274379 Query 68309 TTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTC 68368 ||||| ||||| || || || || | |||||||||||| ||||| || ||||||||||| Sbjct 274378 CTCTAATTGCTTACCAGCAAAGATCAATCTTTGTTGGTCAGGTGGGATACCTTCCTTGTC 274319 Query 68369 TTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGT 68428 ||| ||||| | ||||||| || || ||||| | ||||| ||||||||||| ||||| Sbjct 274318 TTGGATCTTGGACTTGACGTTGTCAATAGTGTCAGAAGATTCAACTTCCAAGGTAATGGT 274259 Query 68429 TTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || || || |||||||| ||||| || ||||| Sbjct 274258 CTTACCTGTAAGGGTCTTAACGAAAATTTGCAT 274226 Score = 170 bits (188), Expect = 4e-37 Identities = 166/214 (78%), Gaps = 0/214 (0%) Strand=Plus/Plus Query 68249 CAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATC 68308 ||| |||||||| | ||||| || ||||||||||| || ||||| | || || ||||| Sbjct 899501 CAAAACCAAGTGCAAGGTGGATTCCTTTTGGATGTTGTAGTCGGACAAAGTTCTACCATC 899560 Query 68309 TTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTC 68368 ||| || ||||| || || || || | |||||||||||| |||||||| |||||||| || Sbjct 899561 TTCCAATTGCTTACCAGCAAAGATTAATCTTTGTTGGTCAGGTGGAATACCTTCCTTATC 899620 Query 68369 TTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGT 68428 ||| ||||| | ||||||| || |||||||| | ||||| || || | ||| || || Sbjct 899621 TTGGATCTTGGACTTGACGTTGTCAATGGTGTCAGAGGATTCAACCTCAAGGGTAATAGT 899680 Query 68429 TTTTCCCGTGAGGGTCTTGACGAATATCTGCATT 68462 || || || || ||||| ||||| || |||||| Sbjct 899681 CTTACCAGTAAGAGTCTTAACGAAGATTTGCATT 899714 Score = 168 bits (186), Expect = 1e-36 Identities = 165/213 (77%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 68249 CAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATC 68308 ||| || ||||| || || || || ||||| ||||| ||||| || | || || ||||| Sbjct 898817 CAAGACTAAGTGAAGAGTAGATTCCTTTTGAATGTTGTAATCAGACAAAGTTCTACCATC 898876 Query 68309 TTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTC 68368 ||| || ||||| || ||||| || | |||||||||||| |||||||| || || ||||| Sbjct 898877 TTCCAATTGCTTACCAGCGAAAATCAATCTTTGTTGGTCAGGTGGAATACCCTCTTTGTC 898936 Query 68369 TTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGT 68428 |||||| || | |||||| || |||||||| | ||||| |||||||| ||||| || Sbjct 898937 TTGAATTTTAGACTTGACATTGTCAATGGTGTCGGAGGATTCAACTTCCAAAGTGATAGT 898996 Query 68429 TTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || || || | ||| |||||||| || ||||| Sbjct 898997 CTTACCAGTTAAGGTTTTGACGAAGATTTGCAT 899029 Score = 150 bits (166), Expect = 3e-31 Identities = 161/213 (76%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 68249 CAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATC 68308 ||| || ||||||| ||||| || ||||||||||| || || || | || || ||||| Sbjct 899045 CAAAACTAAGTGTAAAGTGGATTCCTTTTGGATGTTGTAGTCAGATAAAGTTCTACCATC 899104 Query 68309 TTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTC 68368 ||| || ||||| || || || || | |||||||||||| |||||||| || || ||||| Sbjct 899105 TTCCAATTGCTTACCAGCAAAGATTAATCTTTGTTGGTCAGGTGGAATACCCTCTTTGTC 899164 Query 68369 TTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGT 68428 |||||| || | ||| || || || ||||| | ||||| |||||||| ||||| || Sbjct 899165 TTGAATTTTGGACTTAACATTGTCAATAGTGTCAGAAGATTCAACTTCCAAAGTGATAGT 899224 Query 68429 TTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || || || | ||||| || || || ||||| Sbjct 899225 CTTACCAGTCAAAGTCTTAACAAAGATTTGCAT 899257 Score = 143 bits (158), Expect = 5e-29 Identities = 159/212 (75%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 68250 AATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCT 68309 || |||||||| || || || || ||||| ||||| || || || | || || || || Sbjct 899274 AAGACCAAGTGAAGGGTAGATTCCTTTTGAATGTTGTAGTCAGACAAGGTTCTGCCGTCC 899333 Query 68310 TCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCT 68369 ||||| ||||| || || || || | ||||||||| || || ||||| |||||||||||| Sbjct 899334 TCTAATTGCTTACCAGCAAAAATCAATCTTTGTTGATCTGGAGGAATACCTTCCTTGTCT 899393 Query 68370 TGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTT 68429 |||||||| | ||| || || |||||||| | || || || || | ||| ||||| Sbjct 899394 TGAATCTTAGACTTAACATTGTCAATGGTGTCGGAAGACTCAACCTCAAGGGTAATGGTC 899453 Query 68430 TTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || || || | ||||||||||| || ||||| Sbjct 899454 TTACCGGTCAAAGTCTTGACGAAAATTTGCAT 899485 >seq8 Length=648860 Score = 172 bits (190), Expect = 1e-37 Identities = 166/213 (78%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 68249 CAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATC 68308 ||| |||||||| | |||||||| ||||||||||| || || || | || || ||||| Sbjct 616596 CAAGACCAAGTGCAAGGTGGACTCCTTTTGGATGTTGTAGTCAGACAAAGTTCTACCATC 616655 Query 68309 TTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTC 68368 || || ||||| || || || || | |||||||||||| ||||| || || |||||||| Sbjct 616656 CTCCAATTGCTTACCAGCAAAGATCAATCTTTGTTGGTCAGGTGGGATACCCTCCTTGTC 616715 Query 68369 TTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGT 68428 ||| ||||| | ||||||| || |||||||| | ||||| ||||||||||| ||||| Sbjct 616716 TTGGATCTTGGACTTGACGTTGTCAATGGTGTCAGAAGATTCAACTTCCAAGGTAATGGT 616775 Query 68429 TTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || || || | ||||| ||||| || ||||| Sbjct 616776 CTTACCTGTCAAAGTCTTAACGAAAATTTGCAT 616808 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921622273276920