Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Nakazawaea_20peltata_20[genbank_20GCA_5F001599355.1_202016-03-01]
11 sequences; 11,653,826 total letters
Query= NC_008724.1
Length=288047
Score E
Sequences producing significant alignments: (Bits) Value
seq5 181 2e-40
seq8 172 1e-37
>seq5
Length=1057341
Score = 181 bits (200), Expect = 2e-40
Identities = 168/213 (79%), Gaps = 0/213 (0%)
Strand=Plus/Minus
Query 68249 CAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATC 68308
||| |||||||| | ||||| || ||||||||||| || ||||| | || || || ||
Sbjct 274438 CAAAACCAAGTGCAAAGTGGATTCCTTTTGGATGTTGTAGTCGGACAAGGTTCTGCCGTC 274379
Query 68309 TTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTC 68368
||||| ||||| || || || || | |||||||||||| ||||| || |||||||||||
Sbjct 274378 CTCTAATTGCTTACCAGCAAAGATCAATCTTTGTTGGTCAGGTGGGATACCTTCCTTGTC 274319
Query 68369 TTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGT 68428
||| ||||| | ||||||| || || ||||| | ||||| ||||||||||| |||||
Sbjct 274318 TTGGATCTTGGACTTGACGTTGTCAATAGTGTCAGAAGATTCAACTTCCAAGGTAATGGT 274259
Query 68429 TTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461
|| || || |||||||| ||||| || |||||
Sbjct 274258 CTTACCTGTAAGGGTCTTAACGAAAATTTGCAT 274226
Score = 170 bits (188), Expect = 4e-37
Identities = 166/214 (78%), Gaps = 0/214 (0%)
Strand=Plus/Plus
Query 68249 CAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATC 68308
||| |||||||| | ||||| || ||||||||||| || ||||| | || || |||||
Sbjct 899501 CAAAACCAAGTGCAAGGTGGATTCCTTTTGGATGTTGTAGTCGGACAAAGTTCTACCATC 899560
Query 68309 TTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTC 68368
||| || ||||| || || || || | |||||||||||| |||||||| |||||||| ||
Sbjct 899561 TTCCAATTGCTTACCAGCAAAGATTAATCTTTGTTGGTCAGGTGGAATACCTTCCTTATC 899620
Query 68369 TTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGT 68428
||| ||||| | ||||||| || |||||||| | ||||| || || | ||| || ||
Sbjct 899621 TTGGATCTTGGACTTGACGTTGTCAATGGTGTCAGAGGATTCAACCTCAAGGGTAATAGT 899680
Query 68429 TTTTCCCGTGAGGGTCTTGACGAATATCTGCATT 68462
|| || || || ||||| ||||| || ||||||
Sbjct 899681 CTTACCAGTAAGAGTCTTAACGAAGATTTGCATT 899714
Score = 168 bits (186), Expect = 1e-36
Identities = 165/213 (77%), Gaps = 0/213 (0%)
Strand=Plus/Plus
Query 68249 CAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATC 68308
||| || ||||| || || || || ||||| ||||| ||||| || | || || |||||
Sbjct 898817 CAAGACTAAGTGAAGAGTAGATTCCTTTTGAATGTTGTAATCAGACAAAGTTCTACCATC 898876
Query 68309 TTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTC 68368
||| || ||||| || ||||| || | |||||||||||| |||||||| || || |||||
Sbjct 898877 TTCCAATTGCTTACCAGCGAAAATCAATCTTTGTTGGTCAGGTGGAATACCCTCTTTGTC 898936
Query 68369 TTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGT 68428
|||||| || | |||||| || |||||||| | ||||| |||||||| ||||| ||
Sbjct 898937 TTGAATTTTAGACTTGACATTGTCAATGGTGTCGGAGGATTCAACTTCCAAAGTGATAGT 898996
Query 68429 TTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461
|| || || | ||| |||||||| || |||||
Sbjct 898997 CTTACCAGTTAAGGTTTTGACGAAGATTTGCAT 899029
Score = 150 bits (166), Expect = 3e-31
Identities = 161/213 (76%), Gaps = 0/213 (0%)
Strand=Plus/Plus
Query 68249 CAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATC 68308
||| || ||||||| ||||| || ||||||||||| || || || | || || |||||
Sbjct 899045 CAAAACTAAGTGTAAAGTGGATTCCTTTTGGATGTTGTAGTCAGATAAAGTTCTACCATC 899104
Query 68309 TTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTC 68368
||| || ||||| || || || || | |||||||||||| |||||||| || || |||||
Sbjct 899105 TTCCAATTGCTTACCAGCAAAGATTAATCTTTGTTGGTCAGGTGGAATACCCTCTTTGTC 899164
Query 68369 TTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGT 68428
|||||| || | ||| || || || ||||| | ||||| |||||||| ||||| ||
Sbjct 899165 TTGAATTTTGGACTTAACATTGTCAATAGTGTCAGAAGATTCAACTTCCAAAGTGATAGT 899224
Query 68429 TTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461
|| || || | ||||| || || || |||||
Sbjct 899225 CTTACCAGTCAAAGTCTTAACAAAGATTTGCAT 899257
Score = 143 bits (158), Expect = 5e-29
Identities = 159/212 (75%), Gaps = 0/212 (0%)
Strand=Plus/Plus
Query 68250 AATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCT 68309
|| |||||||| || || || || ||||| ||||| || || || | || || || ||
Sbjct 899274 AAGACCAAGTGAAGGGTAGATTCCTTTTGAATGTTGTAGTCAGACAAGGTTCTGCCGTCC 899333
Query 68310 TCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCT 68369
||||| ||||| || || || || | ||||||||| || || ||||| ||||||||||||
Sbjct 899334 TCTAATTGCTTACCAGCAAAAATCAATCTTTGTTGATCTGGAGGAATACCTTCCTTGTCT 899393
Query 68370 TGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTT 68429
|||||||| | ||| || || |||||||| | || || || || | ||| |||||
Sbjct 899394 TGAATCTTAGACTTAACATTGTCAATGGTGTCGGAAGACTCAACCTCAAGGGTAATGGTC 899453
Query 68430 TTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461
|| || || | ||||||||||| || |||||
Sbjct 899454 TTACCGGTCAAAGTCTTGACGAAAATTTGCAT 899485
>seq8
Length=648860
Score = 172 bits (190), Expect = 1e-37
Identities = 166/213 (78%), Gaps = 0/213 (0%)
Strand=Plus/Plus
Query 68249 CAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATC 68308
||| |||||||| | |||||||| ||||||||||| || || || | || || |||||
Sbjct 616596 CAAGACCAAGTGCAAGGTGGACTCCTTTTGGATGTTGTAGTCAGACAAAGTTCTACCATC 616655
Query 68309 TTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTC 68368
|| || ||||| || || || || | |||||||||||| ||||| || || ||||||||
Sbjct 616656 CTCCAATTGCTTACCAGCAAAGATCAATCTTTGTTGGTCAGGTGGGATACCCTCCTTGTC 616715
Query 68369 TTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGT 68428
||| ||||| | ||||||| || |||||||| | ||||| ||||||||||| |||||
Sbjct 616716 TTGGATCTTGGACTTGACGTTGTCAATGGTGTCAGAAGATTCAACTTCCAAGGTAATGGT 616775
Query 68429 TTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461
|| || || | ||||| ||||| || |||||
Sbjct 616776 CTTACCTGTCAAAGTCTTAACGAAAATTTGCAT 616808
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 921622273276920
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |