Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nakazawaea_20peltata_20[genbank_20GCA_5F001599355.1_202016-03-01] 11 sequences; 11,653,826 total letters Query= NC_011423.1 Length=111724 Score E Sequences producing significant alignments: (Bits) Value seq5 140 2e-28 seq8 122 6e-23 >seq5 Length=1057341 Score = 140 bits (154), Expect = 2e-28 Identities = 170/230 (74%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 ||||||| ||||||||| || || ||||||||||| || ||||| |||||||| | | | Sbjct 899259 CCACCTCTCAATCTTAAGACCAAGTGAAGGGTAGATTCCTTTTGAATGTTGTAGT--CAG 899316 Query 15010 AGAA--TTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTG 15067 | || |||| |||| |||||||| || ||||| | ||||| | ||||| || | Sbjct 899317 ACAAGGTTCTGCCGTCCTCTAATTGCTTACCAGCAAAAATCAATCTTTGTTGATCTGGAG 899376 Query 15068 GAATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTA 15127 |||| ||||||||||| ||| || || ||| | || || || ||| | || | Sbjct 899377 GAATACCTTCCTTGTCTTGAATCTTAGACTTAACATTGTCAATGGTGTCGGAAGACTCAA 899436 Query 15128 CGTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 | || | ||||||||| ||||| |||| ||| || || |||||||||||| Sbjct 899437 CCTCAAGGGTAATGGTCTTACCGGTCAAAGTCTTGACGAAAATTTGCATA 899486 Score = 134 bits (148), Expect = 1e-26 Identities = 170/232 (73%), Gaps = 4/232 (2%) Strand=Plus/Minus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 ||||||| |||||| ||||| || || | || || || ||||| |||||||| ||| | Sbjct 274452 CCACCTCTCAATCTCAAAACCAAGTGCAAAGTGGATTCCTTTTGGATGTTGTAGTCG--G 274395 Query 15010 AGAA--TTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTG 15067 | || |||| |||| |||||||| || ||||| | ||||| | |||||||| || Sbjct 274394 ACAAGGTTCTGCCGTCCTCTAATTGCTTACCAGCAAAGATCAATCTTTGTTGGTCAGGTG 274335 Query 15068 GAATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTA 15127 | || ||||||||||| || ||| || || | || ||||| || | ||| | Sbjct 274334 GGATACCTTCCTTGTCTTGGATCTTGGACTTGACGTTGTCAATAGTGTCAGAAGATTCAA 274275 Query 15128 CGTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATATT 15179 | || ||||||||||| |||||||| || || || || ||||||||||| || Sbjct 274274 CTTCCAAGGTAATGGTCTTACCTGTAAGGGTCTTAACGAAAATTTGCATCTT 274223 Score = 118 bits (130), Expect = 8e-22 Identities = 163/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 || |||| ||||| || ||||| ||||| ||||| || ||||| ||||||||||| Sbjct 898803 CCTCCTCTTAATCTCAAGACTAAGTGAAGAGTAGATTCCTTTTGAATGTTGTAATCAGAC 898862 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 | | |||| | ||||| ||||| || |||||| | ||||| | |||||||| |||| Sbjct 898863 AAAGTTCTACCATCTTCCAATTGCTTACCAGCGAAAATCAATCTTTGTTGGTCAGGTGGA 898922 Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129 || || || ||||| |||||| || ||| | || || || ||| ||| || Sbjct 898923 ATACCCTCTTTGTCTTGAATTTTAGACTTGACATTGTCAATGGTGTCGGAGGATTCAACT 898982 Query 15130 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 || || || || || ||||| || | ||||| || || ||||||||| Sbjct 898983 TCCAAAGTGATAGTCTTACCAGTTAAGGTTTTGACGAAGATTTGCATA 899030 >seq8 Length=648860 Score = 122 bits (134), Expect = 6e-23 Identities = 166/232 (72%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 ||||||| |||||| || || || || | ||| || || ||||| |||||||| || Sbjct 616582 CCACCTCTCAATCTCAAGACCAAGTGCAAGGTGGACTCCTTTTGGATGTTGTAGTCAGAC 616641 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 | | |||| | || || ||||| || ||||| | ||||| | |||||||| ||| Sbjct 616642 AAAGTTCTACCATCCTCCAATTGCTTACCAGCAAAGATCAATCTTTGTTGGTCAGGTGGG 616701 Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129 || || |||||||| || ||| || || | || || || || | ||| || Sbjct 616702 ATACCCTCCTTGTCTTGGATCTTGGACTTGACGTTGTCAATGGTGTCAGAAGATTCAACT 616761 Query 15130 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATATTTG 15181 || ||||||||||| |||||||||| ||| || || ||||||||||| |||| Sbjct 616762 TCCAAGGTAATGGTCTTACCTGTCAAAGTCTTAACGAAAATTTGCATCTTTG 616813 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 357391952087135