Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nakazawaea_20peltata_20[genbank_20GCA_5F001599355.1_202016-03-01] 11 sequences; 11,653,826 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq5 127 2e-24 seq8 100 3e-16 >seq5 Length=1057341 Score = 127 bits (140), Expect = 2e-24 Identities = 157/215 (73%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 45126 CTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAA 45185 ||||| |||| || || || ||||||||||| || || ||||| | ||| || | Sbjct 898815 CTCAAGACTAAGTGAAGAGTAGATTCCTTTTGAATGTTGTAATCAGACAAAGTTCTACCA 898874 Query 45186 TCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTA 45245 || |||||||| || || ||| | ||||||| ||| ||||| || ||||| || ||||| Sbjct 898875 TCTTCCAATTGCTTACCAGCGAAAATCAATCTTTGTTGGTCAGGTGGAATACCCTCTTTG 898934 Query 45246 TCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACC 45305 ||||||||||| |||| || | ||||||||| || || ||||| | ||| | Sbjct 898935 TCTTGAATTTTAGACTTGACATTGTCAATGGTGTCGGAGGATTCAACTTCCAAAGTGATA 898994 Query 45306 GTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || || || |||| ||||| || || |||||||| Sbjct 898995 GTCTTACCAGTTAAGGTTTTGACGAAGATTTGCAT 899029 Score = 113 bits (124), Expect = 4e-20 Identities = 156/216 (72%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 45126 CTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAA 45185 ||||| || | |||| || |||||||||||||| || || ||| | ||| || | Sbjct 899499 CTCAAAACCAAGTGCAAGGTGGATTCCTTTTGGATGTTGTAGTCGGACAAAGTTCTACCA 899558 Query 45186 TCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTA 45245 || |||||||| || || || | || |||| ||| ||||| || ||||| ||||| ||| Sbjct 899559 TCTTCCAATTGCTTACCAGCAAAGATTAATCTTTGTTGGTCAGGTGGAATACCTTCCTTA 899618 Query 45246 TCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAAC 45304 ||||| || || |||| || | || | |||||| || || || || || || |||| Sbjct 899619 TCTTGGATCTTGGACTTGA-CGTTGTCAATGGTGTCAGAGGATTCAACCTCAAGGGTAAT 899677 Query 45305 CGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || || || || ||||| || || || |||||||| Sbjct 899678 AGTCTTACCAGTAAGAGTCTTAACGAAGATTTGCAT 899713 Score = 104 bits (114), Expect = 2e-17 Identities = 152/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 45126 CTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAA 45185 ||||| |||| || | || |||||||||||||| || || || | ||| || | Sbjct 899043 CTCAAAACTAAGTGTAAAGTGGATTCCTTTTGGATGTTGTAGTCAGATAAAGTTCTACCA 899102 Query 45186 TCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTA 45245 || |||||||| || || || | || |||| ||| ||||| || ||||| || ||||| Sbjct 899103 TCTTCCAATTGCTTACCAGCAAAGATTAATCTTTGTTGGTCAGGTGGAATACCCTCTTTG 899162 Query 45246 TCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACC 45305 ||||||||||| || | || | ||||| ||||| || ||||| | ||| | Sbjct 899163 TCTTGAATTTTGGACTTAACATTGTCAATAGTGTCAGAAGATTCAACTTCCAAAGTGATA 899222 Query 45306 GTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || || || || | ||| || ||||| |||||||| Sbjct 899223 GTCTTACCAGTCAAAGTCTTAACAAAGATTTGCAT 899257 Score = 100 bits (110), Expect = 3e-16 Identities = 154/217 (71%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 45126 CTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAA 45185 ||||| || | |||| || |||||||||||||| || || ||| | |||| | Sbjct 274440 CTCAAAACCAAGTGCAAAGTGGATTCCTTTTGGATGTTGTAGTCGGACAAGGTTCTGCCG 274381 Query 45186 TCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTA 45245 || || ||||| || || || | ||||||| ||| ||||| || || || ||||| || Sbjct 274380 TCCTCTAATTGCTTACCAGCAAAGATCAATCTTTGTTGGTCAGGTGGGATACCTTCCTTG 274321 Query 45246 TCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAAC 45304 ||||| || || |||| || | || | ||||| ||||| || ||||| | |||| Sbjct 274320 TCTTGGATCTTGGACTTGA-CGTTGTCAATAGTGTCAGAAGATTCAACTTCCAAGGTAAT 274262 Query 45305 CGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCATC 45341 || || || || || || || || |||||||||||| Sbjct 274261 GGTCTTACCTGTAAGGGTCTTAACGAAAATTTGCATC 274225 Score = 100 bits (110), Expect = 3e-16 Identities = 144/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 45138 TGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCCAATTGT 45197 || || || ||||||||||| || || || || | |||| | || || ||||| Sbjct 899283 TGAAGGGTAGATTCCTTTTGAATGTTGTAGTCAGACAAGGTTCTGCCGTCCTCTAATTGC 899342 Query 45198 TTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTT 45257 || || || | ||||||| ||| || || || ||||| ||||| || |||||||| || Sbjct 899343 TTACCAGCAAAAATCAATCTTTGTTGATCTGGAGGAATACCTTCCTTGTCTTGAATCTTA 899402 Query 45258 TGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTT 45317 || | || | ||||||||||||||| || || || |||| || || ||||| Sbjct 899403 GACTTAACATTGTCAATGGTGTCGGAAGACTCAACCTCAAGGGTAATGGTCTTACCGGTC 899462 Query 45318 AGAGTTTTTACAAAAATTTGCAT 45340 | ||| || || ||||||||||| Sbjct 899463 AAAGTCTTGACGAAAATTTGCAT 899485 >seq8 Length=648860 Score = 100 bits (110), Expect = 3e-16 Identities = 154/217 (71%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 45126 CTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAA 45185 ||||| || | |||| || || ||||||||||| || || || | ||| || | Sbjct 616594 CTCAAGACCAAGTGCAAGGTGGACTCCTTTTGGATGTTGTAGTCAGACAAAGTTCTACCA 616653 Query 45186 TCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTA 45245 || |||||||| || || || | ||||||| ||| ||||| || || || || || || Sbjct 616654 TCCTCCAATTGCTTACCAGCAAAGATCAATCTTTGTTGGTCAGGTGGGATACCCTCCTTG 616713 Query 45246 TCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAAC 45304 ||||| || || |||| || | || | |||||| ||||| || ||||| | |||| Sbjct 616714 TCTTGGATCTTGGACTTGA-CGTTGTCAATGGTGTCAGAAGATTCAACTTCCAAGGTAAT 616772 Query 45305 CGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCATC 45341 || || || || | ||| || || |||||||||||| Sbjct 616773 GGTCTTACCTGTCAAAGTCTTAACGAAAATTTGCATC 616809 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 452003137849560