Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Nakazawaea_20peltata_20[genbank_20GCA_5F001599355.1_202016-03-01]
11 sequences; 11,653,826 total letters
Query= NC_013772.1
Length=176677
Score E
Sequences producing significant alignments: (Bits) Value
seq8 98.7 1e-15
seq5 96.9 4e-15
>seq8
Length=648860
Score = 98.7 bits (108), Expect = 1e-15
Identities = 162/231 (70%), Gaps = 2/231 (1%)
Strand=Plus/Plus
Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426
|| ||||| || | ||| |||| ||||| || |||||||||||| |||||||| ||
Sbjct 616582 CCACCTCTCAATCTCAAGACCAAGTGCAAGGTGGACTCCTTTTGGATGTTGTAGTCAGAC 616641
Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486
| ||| | | || || | ||||| || || || ||||| | || ||||| | ||
Sbjct 616642 AAAGTTCTACCATCCTCCAATTGCTTACCAGCAAAGATCAATCTTTGTTGGTCAGGTGGG 616701
Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCG-CCACCGTGTCGCTCGATTCCAC 46545
| | ||||||||| |||||| ||||| ||| | | | ||||| ||||| ||
Sbjct 616702 ATACCCTCCTTGTCTTGGATCTTGGACTTGA-CGTTGTCAATGGTGTCAGAAGATTCAAC 616760
Query 46546 ATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCATTTT 46596
|||| || ||||| || || |||| || ||||| || |||||||| ||
Sbjct 616761 TTCCAAGGTAATGGTCTTACCTGTCAAAGTCTTAACGAAAATTTGCATCTT 616811
>seq5
Length=1057341
Score = 96.9 bits (106), Expect = 4e-15
Identities = 162/232 (70%), Gaps = 2/232 (1%)
Strand=Plus/Minus
Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426
|| ||||| || | ||| |||| ||||| || ||||||||||| |||||||||||
Sbjct 274452 CCACCTCTCAATCTCAAAACCAAGTGCAAAGTGGATTCCTTTTGGATGTTGTAGTCGGAC 274393
Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486
| || | |||| || | ||||| || || || ||||| | || ||||| | ||
Sbjct 274392 AAGGTTCTGCCGTCCTCTAATTGCTTACCAGCAAAGATCAATCTTTGTTGGTCAGGTGGG 274333
Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCG-CCACCGTGTCGCTCGATTCCAC 46545
| | |||||||| |||||| ||||| ||| | | | ||||| ||||| ||
Sbjct 274332 ATACCTTCCTTGTCTTGGATCTTGGACTTGA-CGTTGTCAATAGTGTCAGAAGATTCAAC 274274
Query 46546 ATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCATTTTG 46597
|||| || ||||| || || || || || ||||| || |||||||| |||
Sbjct 274273 TTCCAAGGTAATGGTCTTACCTGTAAGGGTCTTAACGAAAATTTGCATCTTG 274222
Score = 82.4 bits (90), Expect = 9e-11
Identities = 159/235 (68%), Gaps = 0/235 (0%)
Strand=Plus/Plus
Query 46359 ATTATTTGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGT 46418
|||||| ||||||||||| | ||| || | || | ||| |||||||| || ||||
Sbjct 898795 ATTATTGACCTCCTCTTAATCTCAAGACTAAGTGAAGAGTAGATTCCTTTTGAATGTTGT 898854
Query 46419 AGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGT 46478
| || || | ||| | | || || | ||||| || ||||| ||||| | || ||||
Sbjct 898855 AATCAGACAAAGTTCTACCATCTTCCAATTGCTTACCAGCGAAAATCAATCTTTGTTGGT 898914
Query 46479 CGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCG 46538
| | || | | ||| ||||| || || ||||| | | | |||||| |
Sbjct 898915 CAGGTGGAATACCCTCTTTGTCTTGAATTTTAGACTTGACATTGTCAATGGTGTCGGAGG 898974
Query 46539 ATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593
|||| || |||| ||||| || || || || | ||||| || |||||||||||
Sbjct 898975 ATTCAACTTCCAAAGTGATAGTCTTACCAGTTAAGGTTTTGACGAAGATTTGCAT 899029
Score = 82.4 bits (90), Expect = 9e-11
Identities = 157/229 (69%), Gaps = 2/229 (1%)
Strand=Plus/Plus
Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426
|| ||||| || | ||| |||| ||||| || ||||||||||| |||||||||||
Sbjct 899487 CCACCTCTCAATCTCAAAACCAAGTGCAAGGTGGATTCCTTTTGGATGTTGTAGTCGGAC 899546
Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486
| ||| | | || || | ||||| || || || || || | || ||||| | ||
Sbjct 899547 AAAGTTCTACCATCTTCCAATTGCTTACCAGCAAAGATTAATCTTTGTTGGTCAGGTGGA 899606
Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCG-CCACCGTGTCGCTCGATTCCAC 46545
| | ||||| || |||||| ||||| ||| | | | ||||| ||||| ||
Sbjct 899607 ATACCTTCCTTATCTTGGATCTTGGACTTGA-CGTTGTCAATGGTGTCAGAGGATTCAAC 899665
Query 46546 ATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCATT 46594
|| | || || || || || || || || ||||| ||||||||||||
Sbjct 899666 CTCAAGGGTAATAGTCTTACCAGTAAGAGTCTTAACGAAGATTTGCATT 899714
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 565238322279720
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |