Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nakazawaea_20peltata_20[genbank_20GCA_5F001599355.1_202016-03-01] 11 sequences; 11,653,826 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq5 95.1 8e-15 seq8 84.2 1e-11 >seq5 Length=1057341 Score = 95.1 bits (104), Expect = 8e-15 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 34755 CCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAA 34814 || || ||||| |||||||||||||| | ||| ||| || || ||||| ||||| || Sbjct 899487 CCACCTCTCAATCTCAAAACCAAGTGCAAGGTGGATTCCTTTTGGATGTTGTAGTCGGAC 899546 Query 34815 AGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGC 34874 | ||| |||| |||| || || || ||||| |||| || ||| ||||| | || Sbjct 899547 AAAGTTCTACCATCTTCCAATTGCTTACCAGCAAAGATTAATCTTTGTTGGTCAGGTGGA 899606 Query 34875 ACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACA 34934 | || ||||| || ||||| |||||| | || | ||| || ||||| Sbjct 899607 ATACCTTCCTTATCTTGGATCTTGGACTTGACGTTGTCAATGGTGTCAGAGGATTCAACC 899666 Query 34935 TCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 || | ||| || || || || || |||||||| || ||||| ||||| Sbjct 899667 TCAAGGGTAATAGTCTTACCAGTAAGAGTCTTAACGAAGATTTGCAT 899713 Score = 82.4 bits (90), Expect = 5e-11 Identities = 156/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 34755 CCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAA 34814 || || ||||| |||||||||||||| | ||| ||| || || ||||| ||||| || Sbjct 274452 CCACCTCTCAATCTCAAAACCAAGTGCAAAGTGGATTCCTTTTGGATGTTGTAGTCGGAC 274393 Query 34815 AGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGC 34874 | | ||| | || || | || || || ||||| || | || ||| ||||| | || Sbjct 274392 AAGGTTCTGCCGTCCTCTAATTGCTTACCAGCAAAGATCAATCTTTGTTGGTCAGGTGGG 274333 Query 34875 ACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACA 34934 | || |||||||| ||||| |||||| | || | ||| | ||||| Sbjct 274332 ATACCTTCCTTGTCTTGGATCTTGGACTTGACGTTGTCAATAGTGTCAGAAGATTCAACT 274273 Query 34935 TCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCATATT 34984 || | ||| ||||| || || || || ||||| || || || ||||| || Sbjct 274272 TCCAAGGTAATGGTCTTACCTGTAAGGGTCTTAACGAAAATTTGCATCTT 274223 >seq8 Length=648860 Score = 84.2 bits (92), Expect = 1e-11 Identities = 159/234 (68%), Gaps = 0/234 (0%) Strand=Plus/Plus Query 34755 CCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAA 34814 || || ||||| ||||| |||||||| | ||| || || || ||||| ||||| || Sbjct 616582 CCACCTCTCAATCTCAAGACCAAGTGCAAGGTGGACTCCTTTTGGATGTTGTAGTCAGAC 616641 Query 34815 AGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGC 34874 | ||| |||| |||| || || || ||||| || | || ||| ||||| | || Sbjct 616642 AAAGTTCTACCATCCTCCAATTGCTTACCAGCAAAGATCAATCTTTGTTGGTCAGGTGGG 616701 Query 34875 ACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACA 34934 | ||||||||||| ||||| |||||| | || | ||| | ||||| Sbjct 616702 ATACCCTCCTTGTCTTGGATCTTGGACTTGACGTTGTCAATGGTGTCAGAAGATTCAACT 616761 Query 34935 TCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCATATTCGTA 34988 || | ||| ||||| || || || | |||||| || || || ||||| || ||| Sbjct 616762 TCCAAGGTAATGGTCTTACCTGTCAAAGTCTTAACGAAAATTTGCATCTTTGTA 616815 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 324633556478808