Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nakazawaea_20peltata_20[genbank_20GCA_5F001599355.1_202016-03-01] 11 sequences; 11,653,826 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq1 201 1e-46 seq4 183 3e-41 seq8 179 4e-40 >seq1 Length=2934271 Score = 201 bits (222), Expect = 1e-46 Identities = 458/683 (67%), Gaps = 6/683 (1%) Strand=Plus/Minus Query 48129 AATTCATCCCCATACACATTATCTAACCCAGGACATTCATTAGGACACATCAATGACCAA 48188 || ||||| || || || | |||| || ||| |||||| ||| | | ||| | |||| Sbjct 85836 AACTCATCACCGTAAACCTCGGCTAAACCTGGAGCTTCATTTGGAGAGAACAAGGTCCAA 85777 Query 48189 TCCTCATCATTTTTTACTCTAGTCATAAATATATCTGGTATCCAAAGAGCTATAAATAAA 48248 || | | |||| ||||| ||| || | |||||| ||||| | |||| || ||| Sbjct 85776 TCTTGGTTCTTTTCGACTCTTTGCATGAACAAATCTGGGATCCATAAAGCTGGGAACAAA 85717 Query 48249 TCCCTAGTTCTTAGTTCTTCATTGCCACTATTCCTTTTAAGTTCAAGAAAGTCCATTATA 48308 || || | ||| | |||||| || || |||| || | | |||| ||||| | || Sbjct 85716 TCTCTGGCTCTAATTTCTTCCTTACCGTGATTCTTTCTGATGTCAATGAAGTCGAAGATG 85657 Query 48309 TCAGCATGCCATGGTTCTAAATATATTGCCATTACACCTGGTCGTTTATTACCTCCTTGA 48368 || ||||||||||| || | || | || | ||||||||| || ||||| ||||| Sbjct 85656 TCGGCATGCCATGGCTCAATGTACAAGGCAAAGGCACCTGGTCTCTTGTTACCACCTTGG 85597 Query 48369 TCTATATATCTGGCAGTATTGTTATAAACTCTTAACATTGGGACAATACCATTTGATATA 48428 || | || | ||||| ||||| | ||||| | |||||| | |||||| || || || Sbjct 85596 TCGACGTAACGAGCAGTGTTGTTGAAGACTCTAACCATTGGAATAATACCGTTGGAAGTA 85537 Query 48429 CCATTGGTTCCCGAAATATAACTTCCACTAGCTCTTATATTACTAAT-TGAAATACCTAT 48487 || || || || | ||| ||| ||| | ||||| || || || || || ||| || Sbjct 85536 CCGTTAGTACCGGCAATGTAAGAACCAGTGGCTCTAATGTTGTGGATATGCAA-ACCAAT 85478 Query 48488 ACCACCTGCCATTTTAGATATTAGAGCACACCGTTTAAGGGTATCATAAATTCCTTCTAT 48547 |||||| || | || || || | |||||| ||| | || |||||||| ||||| || Sbjct 85477 ACCACCGGCAGTCTTGGAAATCAAGGCACACTCTTTCAAAGTGTCATAAATACCTTCGAT 85418 Query 48548 ACTATCATCTATCATATTTAATAGAAAACAACTAGACATTTGCGGATGACAAGTTCCTGA 48607 | ||| || |||| | || |||||| ||||||||| || || ||| || | Sbjct 85417 AGAATCCTCCTTCATGGCAACAAGGAAACAAGAAGACATTTGTGGGTGTGGAGTACCAGC 85358 Query 48608 ATTAAATAATGTTGGAGATGCATGAATAAACCATTTCTCTGATAACAATTTATATGTTTC 48667 || || || |||||||| ||||| | || | ||| || |||| ||||| || || Sbjct 85357 GTTGAACAAAGTTGGAGAAGCATGGGTGAAATACTTCAAAGACAACATGTTATAAGTCTC 85298 Query 48668 AATAACAGAATCTAT-ATCCCATTGATGTATACCTATAGATACACGCATTAACATATATT 48726 || || || || | || | || | ||| || | || | ||| || || || Sbjct 85297 GATGACCTTCTCGATGTTATCACCG-TGGACACCAATGGCGACTCTCATATTCAAATGTT 85239 Query 48727 GAGGTCTTTCAACAATTTTGTTATTTATTTTCAAAAGATATGATTTTTCCAATGTTTTAA 48786 | |||||||| ||| ||| | || |||| | ||| ||| | |||| || || | Sbjct 85238 GTGGTCTTTCGGCAACTTTACCGTCGATCCTCAACAAATAAGATCTCTCCATGGTCTTGA 85179 Query 48787 AACCAAAATAGTTGTA--TGAAA 48807 ||||||| ||||| || ||||| Sbjct 85178 AACCAAAGTAGTTATAGTTGAAA 85156 Score = 89.7 bits (98), Expect = 6e-13 Identities = 163/234 (70%), Gaps = 5/234 (2%) Strand=Plus/Minus Query 47013 GTTCGTAAATAATACATACCAGTCTTTAAACCTAAACTCCATCCATAGAAATGCATACTA 47072 |||| || || |||||||| ||||| ||||| |||| || ||||| |||||||| Sbjct 86967 GTTCTCAAGTAGTACATACCGGTCTTCAAACCCTTCTTCCAACCGTAGAAGTGCATACTG 86908 Query 47073 GTTAATTTAGA-ATAACTAGGTTCTGAAATATGAATATTAAGAGATTGACTCTGATCAAT 47131 || || ||| ||| | || || | |||||||||| | ||||||| |||||||| Sbjct 86907 GTCAACTTACCCATAGTTGGGGCCTTGA-TATGAATATTCAAAGATTGAGATTGATCAAT 86849 Query 47132 AAATGCACCTCTATCAGCTGCCATATCTAAAATAACCCTTTGTGGTATCTCCCATACTGT 47191 | ||||| | || || ||||| || | || | |||| | | ||||| || || Sbjct 86848 GTAGGCACCACGGTCGGCAGCCATGTCAATGATGGTCTTTTGAGACAATTCCCAAACGGT 86789 Query 47192 TTTATAAATTTGTTTAATGTCTTCTGGGA-GATTAGTA--TTTTGAATAGATCC 47242 || || |||| || | || ||||||| | || | | |||||||||||||| Sbjct 86788 CTTGTAGATTTTCTTCAATTCATCTGGGATGTTTGGCAAGTTTTGAATAGATCC 86735 >seq4 Length=1221263 Score = 183 bits (202), Expect = 3e-41 Identities = 413/614 (67%), Gaps = 9/614 (1%) Strand=Plus/Plus Query 18952 AACATCAAACATGCAAAATCACAATGTAGTCCCTCGTCTCTACTTATCAATTCATTAGAA 19011 |||| |||||| ||||| || || | || || |||||||| ||||| || ||||| Sbjct 1137185 AACAACAAACAGGCAAAGTCGGTGTGCATACCTTCATCTCTACTGATCAACTCGTTAGAG 1137244 Query 19012 AATGTTAAACCAGGCATCAGTCCTCttttttttAACCAGAATATAGAAGCAAATGATCCA 19071 || || ||||| ||||| | ||||| || || |||||||| ||||||||||| || ||| Sbjct 1137245 AAGGTCAAACCTGGCATTAAACCTCTCTTCTTCAACCAGAAGATAGAAGCAAAGGAACCA 1137304 Query 19072 GAAAAGAATATACCTTCTACTGCTGCAAAAGCAACTAGTCTTTCTCCATAACTAGCATCA 19131 ||||| |||||||| || || ||||| ||||| | ||| || || | ||| || Sbjct 1137305 CTGAAGAAGATACCTTCAACGGCAGCAAAGGCAACCAATCTCTCACCGAACAAAGCGTCC 1137364 Query 19132 TTATTATGAATCCATTTCAGTGCCCAATCAGCCTTCTTTTTTACACATGGCATTGTCTCT 19191 || | || |||||| ||| ||||| || ||||||| || | |||||| || ||||| Sbjct 1137365 TTGTCATTGATCCATCTCAAAGCCCAGTCGGCCTTCTCCTTGATACATGGAATAGTCTCG 1137424 Query 19192 ATAGAATTAAATAGATACATACGC-TCATCTGTATCTTTAACATATGCATCTATCAATAA 19250 || | ||| || | | | | || || | || ||| || | || | || ||||| || Sbjct 1137425 ATGGCATTGAACA-AGAAGTCAGCTTCCTTTGGATCCTTGATGTAGGTGTCAATCAACAA 1137483 Query 19251 ACTGTACATTTCTGAATGAATATTTTCTATAGCCATCTGAAATCCGTAAAAACATCTTGC 19310 | ||| | || || || || || || || || || || ||||| ||||| | Sbjct 1137484 AGAGTAAGTCTCAGAGTGGATGTTCTCCATCATAATTTGGAAACCGTAGAAACACTTCAG 1137543 Query 19311 TTCTGTTATCTGTACTTCACTACAAAATCTTTCGACCAAATTTTCATTAACTATTCCATC 19370 ||| | | || || || | | || | || ||||| || || || || || || || Sbjct 1137544 TTCAGGAAGTTGAACCTCGGCAGAGAAGTTCTCAACCAAGTTCTCGTTGACAATACCGTC 1137603 Query 19371 ACTAGCTGCAAAAAATGCTAATACATGTTTA-ATAAAATGTTTTTCATCTGAGGTTAA-- 19427 | || || || || || || || | | | || |||| | | || | || ||| | Sbjct 1137604 AGAGGCGGCGAAGAAGGCCAAAAC-TCTGGAGATGAAATATCTCTCGT-TGTCGTTCAAC 1137661 Query 19428 --TGTATTCCAATCATTAATATCTTTAGATAAATCTACTTCTTCAACTGTCCAAAAAGAA 19485 || ||||| ||| | ||||| ||| ||| || | || || | ||||| |||||| Sbjct 1137662 TTGGTCTTCCAGTCAATGATATCCTTACTTAAGTCAATCTCCTCGGCGGTCCAGAAAGAA 1137721 Query 19486 GCCTCTGCTTTTTTATACATGTTCCATATATCACGATATTGTATAGGAAATATAACAAAT 19545 ||||| || || || ||||| | ||| || || | || | || || || | || ||| Sbjct 1137722 GCCTCGGCCTTCTTGTACATTTGCCAGATTTCGTGGTACTTGATTGGGAACAAGACGAAT 1137781 Query 19546 CTATTTTTATTTTC 19559 || || || || || Sbjct 1137782 CTCTTCTTGTTCTC 1137795 >seq8 Length=648860 Score = 179 bits (198), Expect = 4e-40 Identities = 457/689 (66%), Gaps = 22/689 (3%) Strand=Plus/Plus Query 47885 AGATGCTAGATTACATACAGCTACCTCATTTGGATTAGTATATTGTATTATTTCAGCACA 47944 ||| || | ||||||||| || ||| || || | ||||| | || ||| ||| Sbjct 32068 AGAAGCCAAATTACATACGGCAGTCTCCTTCTCATCTGAATATTCAACAATCTCACAACA 32127 Query 47945 TAGATTACCACATTTGATAGTACCCAAATTTTGATGATT--ATTNNNNTTGTTACATGCG 48002 || ||| | |||| ||||| |||||||| | || || ||| | |||| Sbjct 32128 TAAATTGGAAGATTTAATAGTCCCCAAATTCTTTTGGTTCGATTTCAGAT--TACACAGA 32185 Query 48003 TCCTTGTAAAGCATAAAAGGTGTTCCAGTTTCTATCTGAGATTCAATGATAGATTTCCAA 48062 || ||||| |||||||| || || || || || ||||| | ||| | ||| | ||| Sbjct 32186 TCTTTGTAGAGCATAAATGGAGTACCTGTCTCGATCTGCGCTTCTAAGATGGCGGACCAC 32245 Query 48063 ACAGTCCTAGCCTTTATAACAGCTCTAGCTTTA------TTATCATGTTCGTATTTAGTA 48116 | || ||| | || || | ||||| || |||| || ||| ||| Sbjct 32246 AATTTCTGAGCTCTGATTTGAGTCTTTGCTTTCCCCAGGTTTTCATATT----TTTCGTA 32301 Query 48117 TATAACTTCTCAAATTCATCCCCATACACATTATCTAACCCAGGACATTCATTAGGACAC 48176 | | |||| |||||| ||||| | | ||| || ||| |||||||||| | Sbjct 32302 AAGAGCTTC--AAATTCCAGTCCATAAGTACTGGATAAACCTGGAGTTTCATTAGGAGAG 32359 Query 48177 ATCAATGACCAATCCTCATCATTTTTTACTCTAGTCATAAATATATCTGGTATCCA-AAG 48235 | | ||| | ||||| | ||||| ||||||||| ||| || | ||| || Sbjct 32360 AAGAGACTCCACATTTGGTCATTCCTCACTCTTTTCATAAATAAATCAGGCACCCACAAC 32419 Query 48236 AGCTATAAATAAATCCCTAGTTCTTAGTTCTTCATTGCCACTATTCCTTTTAAGTTC--A 48293 || || |||||||||| ||| | ||| || || ||| ||| ||| | || | Sbjct 32420 AGAGGGAAC-AAATCCCTAGCTCTAATTTCCTCTTTCCCATGATT--TTTACGGATCCCA 32476 Query 48294 AGAAAGTCCATTATATCAGCATGCCATGGTTCTAAATATATTGCCATTACACCTGGTCGT 48353 | || || | |||||| |||||||||||| ||||| | || || |||| |||| Sbjct 32477 ATGAAATCAAAAATATCATTATGCCATGGTTCCAAATACACGGCGATAGCACCAGGTCTC 32536 Query 48354 TTATTACCTCCTTGATCTATATATCTGGCAGTATTGTTATAAACTCTTAACATTGGGACA 48413 ||||||||||||||||||| ||||||||||| |||||| | ||||| ||||| |||| | Sbjct 32537 TTATTACCTCCTTGATCTACATATCTGGCAGCATTGTTGAACACTCTCAACATCGGGATA 32596 Query 48414 ATACCATTTGATATACCATTGGTTCCCGAAATATAACTTCCACTAGCTCTTATATTACTA 48473 || ||||| || | ||||| || || || || |||| ||| | | ||| ||||| | Sbjct 32597 ATCCCATTAGAGGTCCCATTAGTACCAGAGATGAAACTCCCAGTCGATCTGATATTGTGA 32656 Query 48474 ATTGAAATACCTATACCACCTGCCATTTTAGATATTAGAGCACACCGTTTAAGGGTATCA 48533 || || || ||||| ||||| ||||||| || | || ||| || || |||||| Sbjct 32657 ATATGCATTCCAATACCTCCTGCATTTTTAGAGATCATCGCGCACTCCTTGAGCGTATCA 32716 Query 48534 TAAATTCCTTCTATACTATCATCTATCAT 48562 |||| || || || |||||| |||| Sbjct 32717 AAAATCCCCTCGATGGAATCATCCTTCAT 32745 Score = 118 bits (130), Expect = 1e-21 Identities = 425/663 (64%), Gaps = 8/663 (1%) Strand=Plus/Plus Query 47004 GCTGATTTTGTTCGTAAATAATACATACCAGTCTTTAAACCTAAACTCCATCCATAGAAA 47063 |||| || || || | |||||||| || ||||| || || |||||||||| ||| Sbjct 31172 GCTGCTTGAGTCCGAAGGTAATACATTCCTGTCTTCAATCCCTTCTTCCATCCATAAAAA 31231 Query 47064 TGCATACTAGTTAATTTAGAATAACTAGGTTCTGAAATATGAATATTAAGAGATTGACTC 47123 |||||||| || || || || | |||| ||| |||| || || ||||| || Sbjct 31232 TGCATACTCGTCAACTTGGACAATGTAGGATCTTTCATATAGATGTTGAGAGACTGTGAT 31291 Query 47124 TGATCAATAAATGCACCTCTATCAGCTGCCATATCTAAAATAACCCTTTGTGGTATCTCC 47183 || || ||||||| ||||||||| |||||||||| | || | || || || ||| Sbjct 31292 TGGTCGATAAATGGGGATCTATCAGCAGCCATATCTACCACTACTTTCTGAGGAATTTCC 31351 Query 47184 CATACTGTTTTATAAATTTGTTTAATGTCTTCTGGGA----GATTAGTATTTTGAATAGA 47239 || ||||||||||||| | ||||| | ||| || | | | | | || ||||| Sbjct 31352 CAAACTGTTTTATAAAGCTCCTTAATATATTCCGGAATCCCGTTCAAT-CCCTGGATAGA 31410 Query 47240 TCCTCCgttttctataattttgttttttaattcatttgaccaaagttttcgttcagttaa 47299 ||| |||| || || |||| | |||| || ||| | | | ||| || Sbjct 31411 TCCATTGTTTGAGATTATGAAACTTTTCACCTCATCTGTCCAGACTCCTAAATCAACCAA 31470 Query 47300 tgtttttaaAAGATGAGGATTAACAATTTGAAATTCTCCAGATAGTACTCTACGGCTATA 47359 | | || | || ||||||||| | || || || || | || | || | |||| Sbjct 31471 GTCTCTCAATAAATAAGGATTAACGACCTGGAACTCACCGGCAAGAGCCCTTCTCGTATA 31530 Query 47360 TATATTACTTGTATATGGTTCTATAGATTCATTATTTCCAAAAATTTGAGCAGTTGATGC 47419 ||||| ||| ||||| | | | ||| ||| || | || || | ||| || Sbjct 31531 GATATTGGAAGTAAGAGGTTCGAAACACTCACTATAACCGAGGATCTGGGAAGTCGACAG 31590 Query 47420 TGTAGGCATGGATGCAACTAATAAGCTATTTCTTACTCCATATTTTTGTATCTNNNNNNN 47479 |||||||| | || |||||||| ||||||| |||| | || | || | Sbjct 31591 AGTAGGCATAGGCGCGACTAATAAAGAGTTTCTTAATCCAAACTTCT-TAAGTGAGTCTT 31649 Query 47480 NNNNNG-TTTCCAATCCCAAAGATCTGATGGAACAACATTCCAAAAATCATATTGAAGAA 47538 | |||||||||||||||| || ||| | | ||||| |||| ||||||| | Sbjct 31650 TAATTGAGGTCCAATCCCAAAGATCCGAAGGAGTAGTGTCCCAAAGATCAAATTGAAGTA 31709 Query 47539 TTCCTTTACTTATCGGAGAACCATTATATGTTTTATAAGGACCGTATAGTTTAGCGAGTT 47598 ||||| | ||| ||||| | ||| | | |||||||||| || || || | | Sbjct 31710 CCCCTTTTGACAGCGGGGAACCTTCATAAGAATCATAAGGACCGAATTCCTTGGCCAACT 31769 Query 47599 CACAACTTGCTTCCAATGCACTATAATATATTGTTTCAAATATTTTTATGTTTAGATTCC 47658 | | | ||||| || || |||||| ||||| || |||| || || | ||| | Sbjct 31770 CGATAGAAGTTTCCACGGCCGCATGATATATAGTTTCGAAAATTTGGATATTCA-ATTTC 31828 Query 47659 TTG 47661 ||| Sbjct 31829 TTG 31831 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562108722710040