Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nakazawaea_20peltata_20[genbank_20GCA_5F001599355.1_202016-03-01] 11 sequences; 11,653,826 total letters Query= NC_020842.1 Length=79114 Score E Sequences producing significant alignments: (Bits) Value seq1 145 4e-30 seq8 111 8e-20 >seq1 Length=2934271 Score = 145 bits (160), Expect = 4e-30 Identities = 430/652 (66%), Gaps = 11/652 (2%) Strand=Plus/Minus Query 25888 ATTTGGACAGAATAAATGCCAATCAGCATTTTGCTCAACTTTCTCCATAAATAAATCTGG 25947 ||||||| |||| || |||||| || | || ||| | | ||| || |||||||| Sbjct 85798 ATTTGGAGAGAACAAGGTCCAATCTTGGTTCTTTTCGACTCTTTGCATGAACAAATCTGG 85739 Query 25948 AATCCACATTGCATAAAATAAATCTCTCGCTCTCATTTCTTCTTTTCCGTGATTCTTTTT 26007 ||||| | || || |||||||| ||||| |||||||| || |||||||||||| | Sbjct 85738 GATCCATAAAGCTGGGAACAAATCTCTGGCTCTAATTTCTTCCTTACCGTGATTCTTTCT 85679 Query 26008 TAGATCTAAGAAATCAAAAATATCTGAGTGCCATGGTTCTAAATAGATAGCAAAACTACC 26067 | || | ||| || || || || | |||||||| || | || | ||||| ||| Sbjct 85678 GATGTCAATGAAGTCGAAGATGTCGGCATGCCATGGCTCAATGTACAAGGCAAAGGCACC 85619 Query 26068 TTTTCTTTTTCCTCCACCTTGATCTACGTATCTTGCAGTTTCATTGAAAACTTTCAACAT 26127 | ||| || |||||||| || ||||| | ||||| | ||||| ||| | | ||| Sbjct 85618 TGGTCTCTTGTTACCACCTTGGTCGACGTAACGAGCAGTGTTGTTGAAGACTCTAACCAT 85559 Query 26128 TGGAACTAATCCAGTTGAAAAT-CCGTTTGTGCTATGAATCTTGGATCCTGTCGATCTAA 26186 ||||| |||| | |||| || | ||||| || | ||| | || || || | ||||| Sbjct 85558 TGGAA-TAATACCGTTGGAAGTACCGTTAGTACCGGCAATGTAAGAACCAGTGGCTCTAA 85500 Query 26187 TATCGTGAGCATGAATACCGATTCCACCAGCCCATTTTGAAATAGCTGCACAATCTGAAA 26246 | | ||| ||| | ||| || ||||| || || ||||| ||||| ||| | Sbjct 85499 TGTTGTGGATATGCAAACCAATACCACCGGCAGTCTTGGAAATCAAGGCACACTCTTTCA 85440 Query 26247 CTGTATCGAAAATTCCTTTTATGCTATCACCTTTCATTCCTAATAAAAAACAAGAAGATA 26306 || || |||| |||| || ||| | ||||| | | | ||||||||||| | Sbjct 85439 AAGTGTCATAAATACCTTCGATAGAATCCTCCTTCATGGCAACAAGGAAACAAGAAGACA 85380 Query 26307 ATTGCGAATGAGTTGTTCCTGAATTAAATAATGTCGGTGTAGCATGAGTATAATATCCTT 26366 ||| | || | || || | || || || || || | |||||| || |||| ||| Sbjct 85379 TTTGTGGGTGTGGAGTACCAGCGTTGAACAAAGTTGGAGAAGCATGGGTGAAATA--CTT 85322 Query 26367 CACTCA-AAGCTG-TATAAGTTTC-AAGAACTTCATCGATATTGTAATTACTAACTTCAA 26423 || | || || ||||||| || | || |||| ||||| || | | || ||| Sbjct 85321 CAAAGACAACATGTTATAAGTCTCGATGACCTTC-TCGATGTTATCACCGTGGACACCAA 85263 Query 26424 TAGCTGTTCTTAACCACATATATTGAGGTCGTTCAATTACATTATTTTCCGCATCTCTAA 26483 | || ||| | || || ||| |||| ||| || ||| || ||| || | Sbjct 85262 TGGCGACTCTCATATTCAAATGTTGTGGTCTTTCGGCAACTTTACCGTC--GATC-CTCA 85206 Query 26484 TCAAATAAGATTTTTCTAAAGTTTTCAATCCAAAATAATCATGATTGAAATC 26535 |||||||||| | || | || || || ||||| || | || |||||||| Sbjct 85205 ACAAATAAGATCTCTCCATGGTCTTGAAACCAAAGTAGTTATAGTTGAAATC 85154 Score = 82.4 bits (90), Expect = 4e-11 Identities = 106/145 (73%), Gaps = 1/145 (1%) Strand=Plus/Minus Query 25016 AATTCTCCAGACAAAACTCTTCTTATTGATAAGTTTGAAGTGAATGGTTCAAAACATTCA 25075 ||||| || | ||| |||||||| | | ||| |||||| | || || |||||||| Sbjct 86646 AATTCACCGGCCAACACTCTTCTAGAGTAAATGTTAGAAGTGTACGGCTCGAAACATTCG 86587 Query 25076 TTATTTCCTAAGATTTGAGAAGTAGATGCTGTTGGCATTAATGCTATTAATAGCGAATTT 25135 || | || ||||||||||||||||| || ||||||||| || | || | || ||| Sbjct 86586 TTGTAACCCAAGATTTGAGAAGTAGAAGCAGTTGGCATTGGAGCAACCAACAAAGAGTTT 86527 Query 25136 CTCAAACCATATTTAAC-AATCTCT 25159 |||| ||| | ||| | ||||||| Sbjct 86526 CTCATACCGTGCTTAGCTAATCTCT 86502 >seq8 Length=648860 Score = 111 bits (122), Expect = 8e-20 Identities = 248/367 (68%), Gaps = 14/367 (4%) Strand=Plus/Plus Query 25925 ACTTTCTCCATAAATAAATCTGGAATCCACATTGCATAAAATAAATCTCTCGCTCTCATT 25984 ||| | | |||||||||||| || | ||||| | || ||||| || ||||| ||| Sbjct 32387 ACTCTTTTCATAAATAAATCAGGCACCCACAACAGAGGGAACAAATCCCTAGCTCTAATT 32446 Query 25985 TCTTCTTTTCCGTGATTCTTTTTTAGAT--CTAAGAAATCAAAAATATCTGAGTGCCATG 26042 || ||||| || |||| |||| ||| | | ||||||||||||||| ||||||| Sbjct 32447 TCCTCTTTCCCATGAT--TTTTACGGATCCCAATGAAATCAAAAATATCATTATGCCATG 32504 Query 26043 GTTCTAAATAGATAGCAAAACTACCTTTTCTTTTTCCTCCACCTTGATCTACGTATCTTG 26102 |||| ||||| | || | | ||| ||| || || ||||||||||| ||||| | Sbjct 32505 GTTCCAAATACACGGCGATAGCACCAGGTCTCTTATTACCTCCTTGATCTACATATCTGG 32564 Query 26103 CAGTTTCATTGAAAACTTTCAACATTGGAACTAAT-CCAGTTGAAAATCCGTTTGT---- 26157 ||| | ||||| ||| ||||||| || | |||| ||| | || || || || Sbjct 32565 CAGCATTGTTGAACACTCTCAACATCGGGA-TAATCCCATTAGAGGTCCCATTAGTACCA 32623 Query 26158 GCTATGAATCTTGGATCCTGTCGATCTAATATCGTGAGCATGAATACCGATTCCACCAGC 26217 | ||||| || || |||||||| |||| |||| ||| || || || || || || Sbjct 32624 GAGATGAAACT----CCCAGTCGATCTGATATTGTGAATATGCATTCCAATACCTCCTGC 32679 Query 26218 CCATTTTGAAATAGCTGCACAATCTGAAACTGTATCGAAAATTCCTTTTATGCTATCACC 26277 ||| || || || || || | ||||| ||||| || | ||| |||| | Sbjct 32680 ATTTTTAGAGATCATCGCGCACTCCTTGAGCGTATCAAAAATCCCCTCGATGGAATCATC 32739 Query 26278 TTTCATT 26284 |||||| Sbjct 32740 CTTCATT 32746 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 253039966076825