Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Nakazawaea_20peltata_20[genbank_20GCA_5F001599355.1_202016-03-01]
11 sequences; 11,653,826 total letters
Query= NC_020842.1
Length=79114
Score E
Sequences producing significant alignments: (Bits) Value
seq1 145 4e-30
seq8 111 8e-20
>seq1
Length=2934271
Score = 145 bits (160), Expect = 4e-30
Identities = 430/652 (66%), Gaps = 11/652 (2%)
Strand=Plus/Minus
Query 25888 ATTTGGACAGAATAAATGCCAATCAGCATTTTGCTCAACTTTCTCCATAAATAAATCTGG 25947
||||||| |||| || |||||| || | || ||| | | ||| || ||||||||
Sbjct 85798 ATTTGGAGAGAACAAGGTCCAATCTTGGTTCTTTTCGACTCTTTGCATGAACAAATCTGG 85739
Query 25948 AATCCACATTGCATAAAATAAATCTCTCGCTCTCATTTCTTCTTTTCCGTGATTCTTTTT 26007
||||| | || || |||||||| ||||| |||||||| || |||||||||||| |
Sbjct 85738 GATCCATAAAGCTGGGAACAAATCTCTGGCTCTAATTTCTTCCTTACCGTGATTCTTTCT 85679
Query 26008 TAGATCTAAGAAATCAAAAATATCTGAGTGCCATGGTTCTAAATAGATAGCAAAACTACC 26067
| || | ||| || || || || | |||||||| || | || | ||||| |||
Sbjct 85678 GATGTCAATGAAGTCGAAGATGTCGGCATGCCATGGCTCAATGTACAAGGCAAAGGCACC 85619
Query 26068 TTTTCTTTTTCCTCCACCTTGATCTACGTATCTTGCAGTTTCATTGAAAACTTTCAACAT 26127
| ||| || |||||||| || ||||| | ||||| | ||||| ||| | | |||
Sbjct 85618 TGGTCTCTTGTTACCACCTTGGTCGACGTAACGAGCAGTGTTGTTGAAGACTCTAACCAT 85559
Query 26128 TGGAACTAATCCAGTTGAAAAT-CCGTTTGTGCTATGAATCTTGGATCCTGTCGATCTAA 26186
||||| |||| | |||| || | ||||| || | ||| | || || || | |||||
Sbjct 85558 TGGAA-TAATACCGTTGGAAGTACCGTTAGTACCGGCAATGTAAGAACCAGTGGCTCTAA 85500
Query 26187 TATCGTGAGCATGAATACCGATTCCACCAGCCCATTTTGAAATAGCTGCACAATCTGAAA 26246
| | ||| ||| | ||| || ||||| || || ||||| ||||| ||| |
Sbjct 85499 TGTTGTGGATATGCAAACCAATACCACCGGCAGTCTTGGAAATCAAGGCACACTCTTTCA 85440
Query 26247 CTGTATCGAAAATTCCTTTTATGCTATCACCTTTCATTCCTAATAAAAAACAAGAAGATA 26306
|| || |||| |||| || ||| | ||||| | | | ||||||||||| |
Sbjct 85439 AAGTGTCATAAATACCTTCGATAGAATCCTCCTTCATGGCAACAAGGAAACAAGAAGACA 85380
Query 26307 ATTGCGAATGAGTTGTTCCTGAATTAAATAATGTCGGTGTAGCATGAGTATAATATCCTT 26366
||| | || | || || | || || || || || | |||||| || |||| |||
Sbjct 85379 TTTGTGGGTGTGGAGTACCAGCGTTGAACAAAGTTGGAGAAGCATGGGTGAAATA--CTT 85322
Query 26367 CACTCA-AAGCTG-TATAAGTTTC-AAGAACTTCATCGATATTGTAATTACTAACTTCAA 26423
|| | || || ||||||| || | || |||| ||||| || | | || |||
Sbjct 85321 CAAAGACAACATGTTATAAGTCTCGATGACCTTC-TCGATGTTATCACCGTGGACACCAA 85263
Query 26424 TAGCTGTTCTTAACCACATATATTGAGGTCGTTCAATTACATTATTTTCCGCATCTCTAA 26483
| || ||| | || || ||| |||| ||| || ||| || ||| || |
Sbjct 85262 TGGCGACTCTCATATTCAAATGTTGTGGTCTTTCGGCAACTTTACCGTC--GATC-CTCA 85206
Query 26484 TCAAATAAGATTTTTCTAAAGTTTTCAATCCAAAATAATCATGATTGAAATC 26535
|||||||||| | || | || || || ||||| || | || ||||||||
Sbjct 85205 ACAAATAAGATCTCTCCATGGTCTTGAAACCAAAGTAGTTATAGTTGAAATC 85154
Score = 82.4 bits (90), Expect = 4e-11
Identities = 106/145 (73%), Gaps = 1/145 (1%)
Strand=Plus/Minus
Query 25016 AATTCTCCAGACAAAACTCTTCTTATTGATAAGTTTGAAGTGAATGGTTCAAAACATTCA 25075
||||| || | ||| |||||||| | | ||| |||||| | || || ||||||||
Sbjct 86646 AATTCACCGGCCAACACTCTTCTAGAGTAAATGTTAGAAGTGTACGGCTCGAAACATTCG 86587
Query 25076 TTATTTCCTAAGATTTGAGAAGTAGATGCTGTTGGCATTAATGCTATTAATAGCGAATTT 25135
|| | || ||||||||||||||||| || ||||||||| || | || | || |||
Sbjct 86586 TTGTAACCCAAGATTTGAGAAGTAGAAGCAGTTGGCATTGGAGCAACCAACAAAGAGTTT 86527
Query 25136 CTCAAACCATATTTAAC-AATCTCT 25159
|||| ||| | ||| | |||||||
Sbjct 86526 CTCATACCGTGCTTAGCTAATCTCT 86502
>seq8
Length=648860
Score = 111 bits (122), Expect = 8e-20
Identities = 248/367 (68%), Gaps = 14/367 (4%)
Strand=Plus/Plus
Query 25925 ACTTTCTCCATAAATAAATCTGGAATCCACATTGCATAAAATAAATCTCTCGCTCTCATT 25984
||| | | |||||||||||| || | ||||| | || ||||| || ||||| |||
Sbjct 32387 ACTCTTTTCATAAATAAATCAGGCACCCACAACAGAGGGAACAAATCCCTAGCTCTAATT 32446
Query 25985 TCTTCTTTTCCGTGATTCTTTTTTAGAT--CTAAGAAATCAAAAATATCTGAGTGCCATG 26042
|| ||||| || |||| |||| ||| | | ||||||||||||||| |||||||
Sbjct 32447 TCCTCTTTCCCATGAT--TTTTACGGATCCCAATGAAATCAAAAATATCATTATGCCATG 32504
Query 26043 GTTCTAAATAGATAGCAAAACTACCTTTTCTTTTTCCTCCACCTTGATCTACGTATCTTG 26102
|||| ||||| | || | | ||| ||| || || ||||||||||| ||||| |
Sbjct 32505 GTTCCAAATACACGGCGATAGCACCAGGTCTCTTATTACCTCCTTGATCTACATATCTGG 32564
Query 26103 CAGTTTCATTGAAAACTTTCAACATTGGAACTAAT-CCAGTTGAAAATCCGTTTGT---- 26157
||| | ||||| ||| ||||||| || | |||| ||| | || || || ||
Sbjct 32565 CAGCATTGTTGAACACTCTCAACATCGGGA-TAATCCCATTAGAGGTCCCATTAGTACCA 32623
Query 26158 GCTATGAATCTTGGATCCTGTCGATCTAATATCGTGAGCATGAATACCGATTCCACCAGC 26217
| ||||| || || |||||||| |||| |||| ||| || || || || || ||
Sbjct 32624 GAGATGAAACT----CCCAGTCGATCTGATATTGTGAATATGCATTCCAATACCTCCTGC 32679
Query 26218 CCATTTTGAAATAGCTGCACAATCTGAAACTGTATCGAAAATTCCTTTTATGCTATCACC 26277
||| || || || || || | ||||| ||||| || | ||| |||| |
Sbjct 32680 ATTTTTAGAGATCATCGCGCACTCCTTGAGCGTATCAAAAATCCCCTCGATGGAATCATC 32739
Query 26278 TTTCATT 26284
||||||
Sbjct 32740 CTTCATT 32746
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 253039966076825
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |