Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Nakazawaea_20peltata_20[genbank_20GCA_5F001599355.1_202016-03-01]
11 sequences; 11,653,826 total letters
Query= NC_021246.1
Length=281182
Score E
Sequences producing significant alignments: (Bits) Value
seq5 163 5e-35
seq8 129 1e-24
>seq5
Length=1057341
Score = 163 bits (180), Expect = 5e-35
Identities = 188/252 (75%), Gaps = 1/252 (0%)
Strand=Plus/Plus
Query 193124 AATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATT 193183
||||| |||||||||||||||| | |||| ||||| || | || || || ||
Sbjct 899477 AATTTGCATACCACCTCTCAATCTCAAAACCAAGTGCAAGGTGGATTCCTTTTGGATGTT 899536
Query 193184 ATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTG 193243
|||||||| || |||||| ||| || ||||| || || ||||| |||||||| |||||
Sbjct 899537 GTAGTCGGACAAAGTTCTACCATCTTCCAATTGCTTACCAGCAAAGATTAATCTTTGTTG 899596
Query 193244 ATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGA 193303
||||| || || ||||| |||||||| || |||| || | || ||| || || ||
Sbjct 899597 GTCAGGTGGAATACCTTCCTTATCTTGGATCTTGGACTTGACGTTGTCAATGGTGTCAGA 899656
Query 193304 AGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCATTTT 193363
|| ||||| || || || ||||| ||||| || || || || || || ||||||||| |
Sbjct 899657 GGATTCAACCTCAAGGGTAATAGTCTTACCAGTAAGAGTCTTAACGAAGATTTGCATTGT 899716
Query 193364 ATTAG-TAAAAT 193374
||||| ||||||
Sbjct 899717 ATTAGATAAAAT 899728
Score = 156 bits (172), Expect = 8e-33
Identities = 176/236 (75%), Gaps = 0/236 (0%)
Strand=Plus/Plus
Query 193125 ATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTA 193184
|||| |||||||||||||||| | || | || || || | || || || ||
Sbjct 899022 ATTTGCATACCACCTCTCAATCTCAAAACTAAGTGTAAAGTGGATTCCTTTTGGATGTTG 899081
Query 193185 TAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGA 193244
||||| ||||| |||||| ||| || ||||| || || ||||| |||||||| |||||
Sbjct 899082 TAGTCAGATAAAGTTCTACCATCTTCCAATTGCTTACCAGCAAAGATTAATCTTTGTTGG 899141
Query 193245 TCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAA 193304
||||| || || || ||||| ||||| ||||||| || | ||| |||||| || |||
Sbjct 899142 TCAGGTGGAATACCCTCTTTGTCTTGAATTTTGGACTTAACATTGTCAATAGTGTCAGAA 899201
Query 193305 GACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360
|| |||||||| | ||| ||||| ||||| || | || || ||||| ||||||||
Sbjct 899202 GATTCAACTTCCAAAGTGATAGTCTTACCAGTCAAAGTCTTAACAAAGATTTGCAT 899257
Score = 141 bits (156), Expect = 2e-28
Identities = 173/236 (73%), Gaps = 0/236 (0%)
Strand=Plus/Plus
Query 193125 ATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTA 193184
|||| |||||||||||||||| | |||| || | |||| || || ||| ||
Sbjct 899250 ATTTGCATACCACCTCTCAATCTTAAGACCAAGTGAAGGGTAGATTCCTTTTGAATGTTG 899309
Query 193185 TAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGA 193244
||||| || || ||||| || |||||||| || || |||||||| ||||| ||||||
Sbjct 899310 TAGTCAGACAAGGTTCTGCCGTCCTCTAATTGCTTACCAGCAAAAATCAATCTTTGTTGA 899369
Query 193245 TCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAA 193304
|| ||||| || ||||| || ||||| || || | || | ||| ||| || ||||||
Sbjct 899370 TCTGGAGGAATACCTTCCTTGTCTTGAATCTTAGACTTAACATTGTCAATGGTGTCGGAA 899429
Query 193305 GACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360
|||||||| || || || || || ||||| || | || || || || ||||||||
Sbjct 899430 GACTCAACCTCAAGGGTAATGGTCTTACCGGTCAAAGTCTTGACGAAAATTTGCAT 899485
Score = 138 bits (152), Expect = 2e-27
Identities = 169/231 (73%), Gaps = 0/231 (0%)
Strand=Plus/Minus
Query 193133 ACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGA 193192
|||||||||||||| | |||| ||||| || | || || || || ||||||||
Sbjct 274453 ACCACCTCTCAATCTCAAAACCAAGTGCAAAGTGGATTCCTTTTGGATGTTGTAGTCGGA 274394
Query 193193 TAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGG 193252
|| ||||| || |||||||| || || ||||| || ||||| ||||| ||||| ||
Sbjct 274393 CAAGGTTCTGCCGTCCTCTAATTGCTTACCAGCAAAGATCAATCTTTGTTGGTCAGGTGG 274334
Query 193253 TATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAAC 193312
|| ||||| || ||||| || |||| || | || |||||| || ||||| |||||
Sbjct 274333 GATACCTTCCTTGTCTTGGATCTTGGACTTGACGTTGTCAATAGTGTCAGAAGATTCAAC 274274
Query 193313 TTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCATTTT 193363
||| | || || || |||||||| || || || || || |||||||| ||
Sbjct 274273 TTCCAAGGTAATGGTCTTACCTGTAAGGGTCTTAACGAAAATTTGCATCTT 274223
>seq8
Length=648860
Score = 129 bits (142), Expect = 1e-24
Identities = 167/231 (72%), Gaps = 0/231 (0%)
Strand=Plus/Plus
Query 193133 ACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGA 193192
|||||||||||||| | |||| ||||| || | ||| || || || ||||| ||
Sbjct 616581 ACCACCTCTCAATCTCAAGACCAAGTGCAAGGTGGACTCCTTTTGGATGTTGTAGTCAGA 616640
Query 193193 TAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGG 193252
|| |||||| ||| || ||||| || || ||||| || ||||| ||||| ||||| ||
Sbjct 616641 CAAAGTTCTACCATCCTCCAATTGCTTACCAGCAAAGATCAATCTTTGTTGGTCAGGTGG 616700
Query 193253 TATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAAC 193312
|| || || || ||||| || |||| || | || ||| || || ||||| |||||
Sbjct 616701 GATACCCTCCTTGTCTTGGATCTTGGACTTGACGTTGTCAATGGTGTCAGAAGATTCAAC 616760
Query 193313 TTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCATTTT 193363
||| | || || || |||||||| | || || || || |||||||| ||
Sbjct 616761 TTCCAAGGTAATGGTCTTACCTGTCAAAGTCTTAACGAAAATTTGCATCTT 616811
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 899654276297520
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |