Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nakazawaea_20peltata_20[genbank_20GCA_5F001599355.1_202016-03-01] 11 sequences; 11,653,826 total letters Query= NC_021247.1 Length=228750 Score E Sequences producing significant alignments: (Bits) Value seq5 143 4e-29 seq8 120 4e-22 >seq5 Length=1057341 Score = 143 bits (158), Expect = 4e-29 Identities = 176/238 (74%), Gaps = 2/238 (1%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||| || | ||||| || ||||| || ||||| || || ||||| ||| || Sbjct 899029 ATGCAAATCTTCGTCAAAACCTTAACTGGTAAGACTATCACTTTGGAAGTTGAATCCTCC 898970 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | ||| || || || |||||| ||||| ||||| || || || || || ||| Sbjct 898969 GACACCATTGACAATGTCAAGTCTAAAATTCAAGACAAAGAGGGTATTCCACCTGACCAA 898910 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 ||||||||||||| || |||||||| | |||||| |||||||| || ||||| || Sbjct 898909 CAAAGATTGATTTTCGCTGGTAAGCAATTGGAAGATGGTAGAACTTTGTCTGATTACAAC 898850 Query 156003 ATATCCAAAG-AGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGGTGTAAAATTG 156059 || || |||| | | || ||||| ||||| || ||||||||||| ||| | ||||| Sbjct 898849 AT-TCAAAAGGAATCTACTCTTCACTTAGTCTTGAGATTAAGAGGAGGTCAATAATTG 898793 Score = 140 bits (154), Expect = 5e-28 Identities = 170/230 (74%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||| ||| |||| || |||||||| || ||||| || || ||||| ||| |||| Sbjct 899257 ATGCAAATCTTTGTTAAGACTTTGACTGGTAAGACTATCACTTTGGAAGTTGAATCTTCT 899198 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | |||| || || || ||||| ||||| ||||| || || || || || ||| Sbjct 899197 GACACTATTGACAATGTTAAGTCCAAAATTCAAGACAAAGAGGGTATTCCACCTGACCAA 899138 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 |||||||| || | ||| |||||||| | |||||| ||||||||||| || || | Sbjct 899137 CAAAGATTAATCTTTGCTGGTAAGCAATTGGAAGATGGTAGAACTTTATCTGACTACA-- 899080 Query 156003 ATATCCAAA--GAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGGT 156050 | ||||||| || | || | || ||||| || ||||| ||||| ||| Sbjct 899079 ACATCCAAAAGGAATCCACTTTACACTTAGTTTTGAGATTGAGAGGTGGT 899030 Score = 123 bits (136), Expect = 4e-23 Identities = 176/246 (72%), Gaps = 4/246 (2%) Strand=Plus/Minus Query 155807 AAATTTATGTAATAAAATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATT 155866 || ||||| ||||| ||||||||| || |||| || | ||||| || |||||||| | Sbjct 899729 AATTTTATCTAATACAATGCAAATCTTCGTTAAGACTCTTACTGGTAAGACTATTACCCT 899670 Query 155867 AGAAGTCGAAGATTCTGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGG 155926 || || ||| ||||| | ||| ||||| || || || |||||||| ||||| Sbjct 899669 TGAGGTTGAATCCTCTGACACCATTGACAACGTCAAGTCCAAGATCCAAGATAAGGAAGG 899610 Query 155927 CATACCTCCAGAACAACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAAC 155986 || || || || ||||||||||| || | ||| |||||||| | |||||| ||||| Sbjct 899609 TATTCCACCTGACCAACAAAGATTAATCTTTGCTGGTAAGCAATTGGAAGATGGTAGAAC 899550 Query 155987 TTTATCAGATTATAATATATCCAAA--GAGGCGACGCTTCATTTAGTGTTAAGATTAAGA 156044 ||| || || || | | ||||||| || | || | || || || || ||||| ||| Sbjct 899549 TTTGTCCGACTACA--ACATCCAAAAGGAATCCACCTTGCACTTGGTTTTGAGATTGAGA 899492 Query 156045 GGCGGT 156050 || ||| Sbjct 899491 GGTGGT 899486 Score = 118 bits (130), Expect = 2e-21 Identities = 165/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||| || | || || ||||| || || || ||||| | || || || ||| Sbjct 899485 ATGCAAATTTTCGTCAAGACTTTGACCGGTAAGACCATTACCCTTGAGGTTGAGTCTTCC 899426 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | ||| || || || ||| || ||||| || ||||| || |||||||| ||| Sbjct 899425 GACACCATTGACAATGTTAAGTCTAAGATTCAAGACAAGGAAGGTATTCCTCCAGATCAA 899366 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 ||||||||||||| ||| |||||||| | || || |||||| || || || || || Sbjct 899365 CAAAGATTGATTTTTGCTGGTAAGCAATTAGAGGACGGCAGAACCTTGTCTGACTACAAC 899306 Query 156003 ATATCCAAA-GAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGGT 156050 || || ||| || | || ||||| || || |||||||| ||||| ||| Sbjct 899305 AT-TCAAAAGGAATCTACCCTTCACTTGGTCTTAAGATTGAGAGGTGGT 899258 Score = 113 bits (124), Expect = 7e-20 Identities = 167/235 (71%), Gaps = 4/235 (2%) Strand=Plus/Plus Query 155820 AAAATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGAT 155879 || |||||||| || |||| || | || || || || ||||| || ||||| ||| | Sbjct 274223 AAGATGCAAATTTTCGTTAAGACCCTTACAGGTAAGACCATTACCTTGGAAGTTGAATCT 274282 Query 155880 TCTGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAA 155939 ||||| | |||| ||||| || || || ||||| || ||||| || || || || Sbjct 274283 TCTGACACTATTGACAACGTCAAGTCCAAGATCCAAGACAAGGAAGGTATCCCACCTGAC 274342 Query 155940 CAACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTAT 155999 |||||||||||||| | ||| |||||||| | || || |||||| || || || || Sbjct 274343 CAACAAAGATTGATCTTTGCTGGTAAGCAATTAGAGGACGGCAGAACCTTGTCCGACTAC 274402 Query 156000 AATATATCCAAA--GAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGGTGT 156052 | | ||||||| || | || | || || || || ||||| ||||| ||||| Sbjct 274403 A--ACATCCAAAAGGAATCCACTTTGCACTTGGTTTTGAGATTGAGAGGTGGTGT 274455 >seq8 Length=648860 Score = 120 bits (132), Expect = 4e-22 Identities = 168/234 (72%), Gaps = 4/234 (2%) Strand=Plus/Minus Query 155820 AAAATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGAT 155879 || |||||||| || |||| || ||||| || || || ||||| || ||||| ||| | Sbjct 616811 AAGATGCAAATTTTCGTTAAGACTTTGACAGGTAAGACCATTACCTTGGAAGTTGAATCT 616752 Query 155880 TCTGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAA 155939 ||||| | ||| ||||| || || || ||||| || || || || || || || Sbjct 616751 TCTGACACCATTGACAACGTCAAGTCCAAGATCCAAGACAAGGAGGGTATCCCACCTGAC 616692 Query 155940 CAACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTAT 155999 |||||||||||||| | ||| |||||||| | || ||| |||||||| || || || Sbjct 616691 CAACAAAGATTGATCTTTGCTGGTAAGCAATTGGAGGATGGTAGAACTTTGTCTGACTAC 616632 Query 156000 AATATATCCAAA--GAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGGTG 156051 | | ||||||| ||| | || | || || || || ||||| ||||| |||| Sbjct 616631 A--ACATCCAAAAGGAGTCCACCTTGCACTTGGTCTTGAGATTGAGAGGTGGTG 616580 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 731871899367600