Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Nakazawaea_20peltata_20[genbank_20GCA_5F001599355.1_202016-03-01]
11 sequences; 11,653,826 total letters
Query= NC_021247.1
Length=228750
Score E
Sequences producing significant alignments: (Bits) Value
seq5 143 4e-29
seq8 120 4e-22
>seq5
Length=1057341
Score = 143 bits (158), Expect = 4e-29
Identities = 176/238 (74%), Gaps = 2/238 (1%)
Strand=Plus/Minus
Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882
|||||||| || | ||||| || ||||| || ||||| || || ||||| ||| ||
Sbjct 899029 ATGCAAATCTTCGTCAAAACCTTAACTGGTAAGACTATCACTTTGGAAGTTGAATCCTCC 898970
Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942
|| | ||| || || || |||||| ||||| ||||| || || || || || |||
Sbjct 898969 GACACCATTGACAATGTCAAGTCTAAAATTCAAGACAAAGAGGGTATTCCACCTGACCAA 898910
Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002
||||||||||||| || |||||||| | |||||| |||||||| || ||||| ||
Sbjct 898909 CAAAGATTGATTTTCGCTGGTAAGCAATTGGAAGATGGTAGAACTTTGTCTGATTACAAC 898850
Query 156003 ATATCCAAAG-AGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGGTGTAAAATTG 156059
|| || |||| | | || ||||| ||||| || ||||||||||| ||| | |||||
Sbjct 898849 AT-TCAAAAGGAATCTACTCTTCACTTAGTCTTGAGATTAAGAGGAGGTCAATAATTG 898793
Score = 140 bits (154), Expect = 5e-28
Identities = 170/230 (74%), Gaps = 4/230 (2%)
Strand=Plus/Minus
Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882
|||||||| ||| |||| || |||||||| || ||||| || || ||||| ||| ||||
Sbjct 899257 ATGCAAATCTTTGTTAAGACTTTGACTGGTAAGACTATCACTTTGGAAGTTGAATCTTCT 899198
Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942
|| | |||| || || || ||||| ||||| ||||| || || || || || |||
Sbjct 899197 GACACTATTGACAATGTTAAGTCCAAAATTCAAGACAAAGAGGGTATTCCACCTGACCAA 899138
Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002
|||||||| || | ||| |||||||| | |||||| ||||||||||| || || |
Sbjct 899137 CAAAGATTAATCTTTGCTGGTAAGCAATTGGAAGATGGTAGAACTTTATCTGACTACA-- 899080
Query 156003 ATATCCAAA--GAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGGT 156050
| ||||||| || | || | || ||||| || ||||| ||||| |||
Sbjct 899079 ACATCCAAAAGGAATCCACTTTACACTTAGTTTTGAGATTGAGAGGTGGT 899030
Score = 123 bits (136), Expect = 4e-23
Identities = 176/246 (72%), Gaps = 4/246 (2%)
Strand=Plus/Minus
Query 155807 AAATTTATGTAATAAAATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATT 155866
|| ||||| ||||| ||||||||| || |||| || | ||||| || |||||||| |
Sbjct 899729 AATTTTATCTAATACAATGCAAATCTTCGTTAAGACTCTTACTGGTAAGACTATTACCCT 899670
Query 155867 AGAAGTCGAAGATTCTGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGG 155926
|| || ||| ||||| | ||| ||||| || || || |||||||| |||||
Sbjct 899669 TGAGGTTGAATCCTCTGACACCATTGACAACGTCAAGTCCAAGATCCAAGATAAGGAAGG 899610
Query 155927 CATACCTCCAGAACAACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAAC 155986
|| || || || ||||||||||| || | ||| |||||||| | |||||| |||||
Sbjct 899609 TATTCCACCTGACCAACAAAGATTAATCTTTGCTGGTAAGCAATTGGAAGATGGTAGAAC 899550
Query 155987 TTTATCAGATTATAATATATCCAAA--GAGGCGACGCTTCATTTAGTGTTAAGATTAAGA 156044
||| || || || | | ||||||| || | || | || || || || ||||| |||
Sbjct 899549 TTTGTCCGACTACA--ACATCCAAAAGGAATCCACCTTGCACTTGGTTTTGAGATTGAGA 899492
Query 156045 GGCGGT 156050
|| |||
Sbjct 899491 GGTGGT 899486
Score = 118 bits (130), Expect = 2e-21
Identities = 165/229 (72%), Gaps = 2/229 (1%)
Strand=Plus/Minus
Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882
|||||||| || | || || ||||| || || || ||||| | || || || |||
Sbjct 899485 ATGCAAATTTTCGTCAAGACTTTGACCGGTAAGACCATTACCCTTGAGGTTGAGTCTTCC 899426
Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942
|| | ||| || || || ||| || ||||| || ||||| || |||||||| |||
Sbjct 899425 GACACCATTGACAATGTTAAGTCTAAGATTCAAGACAAGGAAGGTATTCCTCCAGATCAA 899366
Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002
||||||||||||| ||| |||||||| | || || |||||| || || || || ||
Sbjct 899365 CAAAGATTGATTTTTGCTGGTAAGCAATTAGAGGACGGCAGAACCTTGTCTGACTACAAC 899306
Query 156003 ATATCCAAA-GAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGGT 156050
|| || ||| || | || ||||| || || |||||||| ||||| |||
Sbjct 899305 AT-TCAAAAGGAATCTACCCTTCACTTGGTCTTAAGATTGAGAGGTGGT 899258
Score = 113 bits (124), Expect = 7e-20
Identities = 167/235 (71%), Gaps = 4/235 (2%)
Strand=Plus/Plus
Query 155820 AAAATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGAT 155879
|| |||||||| || |||| || | || || || || ||||| || ||||| ||| |
Sbjct 274223 AAGATGCAAATTTTCGTTAAGACCCTTACAGGTAAGACCATTACCTTGGAAGTTGAATCT 274282
Query 155880 TCTGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAA 155939
||||| | |||| ||||| || || || ||||| || ||||| || || || ||
Sbjct 274283 TCTGACACTATTGACAACGTCAAGTCCAAGATCCAAGACAAGGAAGGTATCCCACCTGAC 274342
Query 155940 CAACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTAT 155999
|||||||||||||| | ||| |||||||| | || || |||||| || || || ||
Sbjct 274343 CAACAAAGATTGATCTTTGCTGGTAAGCAATTAGAGGACGGCAGAACCTTGTCCGACTAC 274402
Query 156000 AATATATCCAAA--GAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGGTGT 156052
| | ||||||| || | || | || || || || ||||| ||||| |||||
Sbjct 274403 A--ACATCCAAAAGGAATCCACTTTGCACTTGGTTTTGAGATTGAGAGGTGGTGT 274455
>seq8
Length=648860
Score = 120 bits (132), Expect = 4e-22
Identities = 168/234 (72%), Gaps = 4/234 (2%)
Strand=Plus/Minus
Query 155820 AAAATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGAT 155879
|| |||||||| || |||| || ||||| || || || ||||| || ||||| ||| |
Sbjct 616811 AAGATGCAAATTTTCGTTAAGACTTTGACAGGTAAGACCATTACCTTGGAAGTTGAATCT 616752
Query 155880 TCTGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAA 155939
||||| | ||| ||||| || || || ||||| || || || || || || ||
Sbjct 616751 TCTGACACCATTGACAACGTCAAGTCCAAGATCCAAGACAAGGAGGGTATCCCACCTGAC 616692
Query 155940 CAACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTAT 155999
|||||||||||||| | ||| |||||||| | || ||| |||||||| || || ||
Sbjct 616691 CAACAAAGATTGATCTTTGCTGGTAAGCAATTGGAGGATGGTAGAACTTTGTCTGACTAC 616632
Query 156000 AATATATCCAAA--GAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGGTG 156051
| | ||||||| ||| | || | || || || || ||||| ||||| ||||
Sbjct 616631 A--ACATCCAAAAGGAGTCCACCTTGCACTTGGTCTTGAGATTGAGAGGTGGTG 616580
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 731871899367600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |