Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nakazawaea_20peltata_20[genbank_20GCA_5F001599355.1_202016-03-01] 11 sequences; 11,653,826 total letters Query= NC_021248.1 Length=307691 Score E Sequences producing significant alignments: (Bits) Value seq5 167 5e-36 seq8 123 5e-23 >seq5 Length=1057341 Score = 167 bits (184), Expect = 5e-36 Identities = 175/230 (76%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 ||||||||||| | | || ||||| |||||||| | || || ||| || || ||| Sbjct 899028 ATACCACCTCTCAATCTCAAAACTAAGTGTAAAGTGGATTCCTTTTGGATGTTGTAGTCA 899087 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 ||||| |||| |||| |||||||| |||||||||||||||||||| ||||| |||||| Sbjct 899088 GATAAAGTTCTACCATCTTCCAATTGCTTACCAGCAAAGATTAATCTTTGTTGGTCAGGT 899147 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || || ||||| ||||| ||||| || ||||| |||| || || ||||| Sbjct 899148 GGAATACCCTCTTTGTCTTGAATTTTGGACTTAACATTGTCAATAGTGTCAGAAGATTCA 899207 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 ||||| | ||| || || |||||||| || || |||| ||| || ||||| Sbjct 899208 ACTTCCAAAGTGATAGTCTTACCAGTCAAAGTCTTAACAAAGATTTGCAT 899257 Score = 143 bits (158), Expect = 5e-29 Identities = 191/262 (73%), Gaps = 4/262 (2%) Strand=Plus/Plus Query 192278 AGATATAGAGTATACTTTTTAGTTTAATAAT--ACCACCTCTAAGACGTAATACTAAATG 192335 |||| || | ||| || |||| ||| || ||| ||||| | | || ||||| || Sbjct 898769 AGATCTATATTATCTCTTCTAGTACAATTATTGACCTCCTCTTAATCTCAAGACTAAGTG 898828 Query 192336 TAAAGTAGCCTC-TTTAGAGATATTATAATCAGATAATGTTCGTTCATCATCCAATTGTT 192394 | ||||| || ||| || || || |||||||| || |||| |||| |||||||| | Sbjct 898829 AAGAGTAGATTCCTTTTGA-ATGTTGTAATCAGACAAAGTTCTACCATCTTCCAATTGCT 898887 Query 192395 TACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTAT 192454 ||||||| || || ||||| ||||| |||||||| || || ||||| ||||| |||||| Sbjct 898888 TACCAGCGAAAATCAATCTTTGTTGGTCAGGTGGAATACCCTCTTTGTCTTGAATTTTAG 898947 Query 192455 TTTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTA 192514 || ||||| || | || || ||||| ||||| | ||| || || |||||||||| Sbjct 898948 ACTTGACATTGTCAATGGTGTCGGAGGATTCAACTTCCAAAGTGATAGTCTTACCAGTTA 899007 Query 192515 ATGTTTTAATAAATATCTGCAT 192536 | ||||| | || || ||||| Sbjct 899008 AGGTTTTGACGAAGATTTGCAT 899029 Score = 141 bits (156), Expect = 2e-28 Identities = 177/243 (73%), Gaps = 0/243 (0%) Strand=Plus/Plus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 ||||||||||| | | || || || || || || | || || ||| || || || Sbjct 899484 ATACCACCTCTCAATCTCAAAACCAAGTGCAAGGTGGATTCCTTTTGGATGTTGTAGTCG 899543 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 || || |||| |||| |||||||| |||||||||||||||||||| ||||| |||||| Sbjct 899544 GACAAAGTTCTACCATCTTCCAATTGCTTACCAGCAAAGATTAATCTTTGTTGGTCAGGT 899603 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || ||||| |||||||| || || || || || || | || || ||||| Sbjct 899604 GGAATACCTTCCTTATCTTGGATCTTGGACTTGACGTTGTCAATGGTGTCAGAGGATTCA 899663 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATTTTATTAGAA 192546 || || || ||||| || |||||||| | || |||| || || |||||| ||||||| Sbjct 899664 ACCTCAAGGGTAATAGTCTTACCAGTAAGAGTCTTAACGAAGATTTGCATTGTATTAGAT 899723 Query 192547 AAA 192549 ||| Sbjct 899724 AAA 899726 Score = 123 bits (136), Expect = 5e-23 Identities = 172/241 (71%), Gaps = 0/241 (0%) Strand=Plus/Minus Query 192299 GTTTAATAATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATAT 192358 ||| ||||| ||||||||| | | || || || || ||||| | || || ||| | Sbjct 274463 GTTCAATAACACCACCTCTCAATCTCAAAACCAAGTGCAAAGTGGATTCCTTTTGGATGT 274404 Query 192359 TATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTT 192418 | || || || || |||| | || || ||||| |||||||||||||| ||||| |||| Sbjct 274403 TGTAGTCGGACAAGGTTCTGCCGTCCTCTAATTGCTTACCAGCAAAGATCAATCTTTGTT 274344 Query 192419 GATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTG 192478 | |||||||| || ||||| || ||||| || || || || || |||| || | Sbjct 274343 GGTCAGGTGGGATACCTTCCTTGTCTTGGATCTTGGACTTGACGTTGTCAATAGTGTCAG 274284 Query 192479 ACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATTT 192538 | ||||| ||||| | |||||||| ||||| || | || |||| || || ||||| | Sbjct 274283 AAGATTCAACTTCCAAGGTAATGGTCTTACCTGTAAGGGTCTTAACGAAAATTTGCATCT 274224 Query 192539 T 192539 | Sbjct 274223 T 274223 Score = 113 bits (124), Expect = 9e-20 Identities = 165/231 (71%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCT-CTTTAGAGATATTATAATC 192365 ||||||||||| | | ||| || || || | |||| | |||| || || || || || Sbjct 899256 ATACCACCTCTCAATCTTAAGACCAAGTGAAGGGTAGATTCCTTTTGA-ATGTTGTAGTC 899314 Query 192366 AGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGG 192425 ||| || |||| | || || ||||| ||||||||||| || ||||| |||||||| || Sbjct 899315 AGACAAGGTTCTGCCGTCCTCTAATTGCTTACCAGCAAAAATCAATCTTTGTTGATCTGG 899374 Query 192426 TGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTC 192485 || || ||||| || ||||| || ||| || ||||| || | || || || || Sbjct 899375 AGGAATACCTTCCTTGTCTTGAATCTTAGACTTAACATTGTCAATGGTGTCGGAAGACTC 899434 Query 192486 TACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || || || |||||||| ||||| || || || || | || || ||||| Sbjct 899435 AACCTCAAGGGTAATGGTCTTACCGGTCAAAGTCTTGACGAAAATTTGCAT 899485 >seq8 Length=648860 Score = 123 bits (136), Expect = 5e-23 Identities = 166/231 (72%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 192309 ACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGA 192368 ||||||||| | | || || || || || || | ||| || ||| || || ||||| Sbjct 616581 ACCACCTCTCAATCTCAAGACCAAGTGCAAGGTGGACTCCTTTTGGATGTTGTAGTCAGA 616640 Query 192369 TAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGG 192428 || |||| |||| |||||||| |||||||||||||| ||||| ||||| |||||||| Sbjct 616641 CAAAGTTCTACCATCCTCCAATTGCTTACCAGCAAAGATCAATCTTTGTTGGTCAGGTGG 616700 Query 192429 TATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTAC 192488 || || || || ||||| || || || || || || | || || ||||| || Sbjct 616701 GATACCCTCCTTGTCTTGGATCTTGGACTTGACGTTGTCAATGGTGTCAGAAGATTCAAC 616760 Query 192489 TTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATTTT 192539 ||| | |||||||| ||||| || || || |||| || || ||||| || Sbjct 616761 TTCCAAGGTAATGGTCTTACCTGTCAAAGTCTTAACGAAAATTTGCATCTT 616811 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 984479861249850