Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nakazawaea_20peltata_20[genbank_20GCA_5F001599355.1_202016-03-01] 11 sequences; 11,653,826 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq1 149 2e-30 seq8 136 1e-26 >seq1 Length=2934271 Score = 149 bits (164), Expect = 2e-30 Identities = 539/838 (64%), Gaps = 9/838 (1%) Strand=Plus/Minus Query 155587 CAATAGACGCCAGATTACATACCGCAGTCTCCTTGTCGTCGCTGTATTCTACAATCTCAC 155646 ||||||| |||| ||||| || || || || | ||| ||||| |||||||||| Sbjct 86084 CAATAGAGGCCAAGTTACAAACGGCTGTTTCTTCAGGGTCAGAATATTCGACAATCTCAC 86025 Query 155647 AGCACAGGTTAGAACTCTTGATGGTGCCTAAATTCTTCTGGTTAGATTTACTGTTACAAG 155706 | |||| ||||||| |||||| | || || ||||| ||||| | || ||||||||| Sbjct 86024 AACACAAGTTAGAAGACTTGATAATACCCAAGTTCTTTTGGTTGGTCTTCTTGTTACAAG 85965 Query 155707 CATCCTTGTATAGAATGTATGGGGTTCCTGTCTCCATCTGTGCGTCCAGAATCTTTAGCC 155766 |||| ||||| | ||| |||| || || ||||| | || || |||| ||| || Sbjct 85964 CATCTTTGTACAACATGAATGGAGTACCGGTCTCAGTTTGAGCCTCCAAAATGGAGTACC 85905 Query 155767 AGAGGTCACGGGCATTAATTTGCTTGT-TGTATCTGCCTTCCGACTCATATTTCATATAC 155825 | | | |||| || | | |||| | | |||||| ||| |||||| ||| Sbjct 85904 ACAATTTCTGGGCCTTGACA-GTTTGTCTACCACGGCCTTCTTTCTCGTATTTCTCGTAC 85846 Query 155826 AGCGTTCGGTAATCCTCACCGTAACAATCACTCAGTCCAGGGCACTTATCGGGGCAAAAC 155885 | | | | || ||||||||| || | || || | || || | ||| Sbjct 85845 AAAGCAATGAACTCATCACCGTAAACCTCGGCTAAACCTGGAGCTTCATTTGGAGAGAAC 85786 Query 155886 AGCGACCAAATTTTATTACCGATTACACGCTC--CATAAATACATCACTCGCCCAAATAG 155943 | | |||| || || | || || || ||| || | ||| ||| | || Sbjct 85785 AAGGTCCAATCTTGGTT--CTTTTCGACTCTTTGCATGAACAAATCTGGGATCCATAAAG 85728 Query 155944 CATAGAAAAGGTCCCTTGCCTTTGACTCCTCATCGCCGTGATTCTTCCGTAGCTCTAAGA 156003 | ||| | || || || | || || | ||||||||||| | | || | || Sbjct 85727 CTGGGAACAAATCTCTGGCTCTAATTTCTTCCTTACCGTGATTCTTTCTGATGTCAATGA 85668 Query 156004 ATTCCTCAATATCAGGATGGTGTGGCTCCAGATACATAGCAAAACTACCATTCCTCTTG- 156062 | || || || | ||| |||||| | |||| ||||| ||| |||||| Sbjct 85667 AGTCGAAGATGTCGGCATGCCATGGCTCAATGTACAAGGCAAAGGCACCTGGTCTCTTGT 85608 Query 156063 --CCACCCTGATCTACATACCGAGCAGTCTTATTGAAGACACCTAGCATAGGAATAATAC 156120 ||||| || || || || |||||||| || |||||||| | | ||| |||||||||| Sbjct 85607 TACCACCTTGGTCGACGTAACGAGCAGTGTTGTTGAAGACTCTAACCATTGGAATAATAC 85548 Query 156121 CATTGGAAGTGCCATTGGTTCCGCGAATATGCGAACCAGATGAGCGAACATTATGAATAT 156180 | |||||||| || || || ||| ||| | ||||||| | | || || || |||| Sbjct 85547 CGTTGGAAGTACCGTTAGTACCGGCAATGTAAGAACCAGTGGCTCTAATGTTGTGGATAT 85488 Query 156181 GTAGTCCAATACCACCTGACCATTTAGAAATTTGAGCGCATTCCTTTACAGTATTGAAAA 156240 | | ||||||||||| | || ||||| || || || || | ||| | ||| Sbjct 85487 GCAAACCAATACCACCGGCAGTCTTGGAAATCAAGGCACACTCTTTCAAAGTGTCATAAA 85428 Query 156241 TACCTTCAATAGAATCATCTTCCATTGATAGTAGATAGCACGAACTTAATTGAGGTCGTG 156300 ||||||| |||||||| || | ||| | | || | || ||| | ||| || ||| Sbjct 85427 TACCTTCGATAGAATCCTCCTTCATGGCAACAAGGAAACAAGAAGACATTTGTGGGTGTG 85368 Query 156301 GTGTTCCAGCGTTGAATAGTGTAGGTGTTGCATGAATAAAATACTTATTAGACATATAAT 156360 | || ||||||||||| | || || | ||||| | |||||||| ||||| | Sbjct 85367 GAGTACCAGCGTTGAACAAAGTTGGAGAAGCATGGGTGAAATACTTCAAAGACAACATGT 85308 Query 156361 CGTATGTCTCCTTAATCTTCTCAAGATTAGACCCGTGAATACAGATAGAGACCCTCAT 156418 || ||||| | | |||||| | ||| ||||| | || || | ||| ||||| Sbjct 85307 TATAAGTCTCGATGACCTTCTCGATGTTATCACCGTGGACACCAATGGCGACTCTCAT 85250 Score = 100 bits (110), Expect = 8e-16 Identities = 103/134 (77%), Gaps = 3/134 (2%) Strand=Plus/Minus Query 301816 ATTTCTTCAATACGGGGAACACCACGGGTTACGTTAGACTTGGACGCAACACCAGCAAAG 301875 ||||| | || ||| |||||||| || ||||| ||| || | |||||||||||| Sbjct 301018 ATTTCCTTAAGACGAGGAACACCTAATGTGACGTT---CTTAGAAGAAACACCAGCAAAA 300962 Query 301876 TGGAAAGTATTCAGAGTTAATTGAGTAGTTGGCTCACCAATACTTTGTGCCGCAATCATA 301935 ||||||||||||| || | ||||||| ||| ||||||||| ||| || |||| | | Sbjct 300961 TGGAAAGTATTCAAGGTCATCTGAGTAGCTGGTTCACCAATAGATTGAGCAGCAACGACA 300902 Query 301936 CCAACCATTTCTCC 301949 ||||||||||| || Sbjct 300901 CCAACCATTTCACC 300888 Score = 95.1 bits (104), Expect = 4e-14 Identities = 199/293 (68%), Gaps = 4/293 (1%) Strand=Plus/Minus Query 302553 ATCATAACCAATCATAATGTCTTCCATACTCTTGATTAAACGACGCTGAATATAACCAGT 302612 ||| ||| || ||| || ||||||| | ||| | |||||||| || |||||||| || Sbjct 300263 ATCGTAATGAACCATGATATCTTCCAAAGCCTTAACCAAACGACGTTGGATATAACCTGT 300204 Query 302613 TGTAGATGTTTTTACAGCTGTATCAATTAGACCAACACGACCACCCATAGCATGGAAGAA 302672 | | || || || || ||||| |||| ||| |||||||| |||| || |||||||| Sbjct 300203 TTCGGCAGTCTTAACGGCAGTATCGATTAAACCTTCACGACCAGCCATGGCGTGGAAGAA 300144 Query 302673 TAGCTCTTCCGGTCGT--AGCCCCCCAATAAAGGAGCTCTCAACGAAACCACGCGCCTCG 302730 | ||||| || || | || | ||| | | || ||||||||||||| | || Sbjct 300143 GAACTCTTGTGGA-GTCAAACCACGCAAGTACG-AGTTCTCAACGAAACCCTTGGATTCA 300086 Query 302731 GGCGAATCGTCGAACTTGGTAAAGTGTGGCAGGGTCCTGTTCTCATAGCCGTATGGGATA 302790 || || | || |||||| || || || | | || | | | ||| |||| ||| Sbjct 300085 GGTGAGTAATCATCCTTGGTGAAATGAGGTAACGATCTATCGGCGAAACCGAATGGAATA 300026 Query 302791 CGCTTTCCATCAACGTTCTGCTGTCCCAGGCACGAAATCATCTGCGAAATATT 302843 || || || |||||| |||| || || | || | | ||| || || ||||| Sbjct 300025 CGTTTACCTTCAACGATCTGTTGACCGACACAGGCAGACATTTGGGAGATATT 299973 >seq8 Length=648860 Score = 136 bits (150), Expect = 1e-26 Identities = 512/791 (65%), Gaps = 13/791 (2%) Strand=Plus/Plus Query 155588 AATAGACGCCAGATTACATACCGCAGTCTCCTTGTCGTCGCTGTATTCTACAATCTCACA 155647 || ||| |||| ||||||||| ||||||||||| || || ||||| ||||||||||| Sbjct 32065 AACAGAAGCCAAATTACATACGGCAGTCTCCTTCTCATCTGAATATTCAACAATCTCACA 32124 Query 155648 GCACAGGTTAGAACTCTTGATGGTGCCTAAATTCTTCTGGTTAGATTTACTGTTACAAGC 155707 || | || ||| || || || || |||||||| ||||| ||||| ||||| Sbjct 32125 ACATAAATTGGAAGATTTAATAGTCCCCAAATTCTTTTGGTTCGATTTCAGATTACACAG 32184 Query 155708 ATCCTTGTATAGAATGTATGGGGTTCCTGTCTCCATCTGTGCGTCCAGAATCTTTAGCCA 155767 ||| ||||| || || |||| || |||||||| ||||| || || | || ||| Sbjct 32185 ATCTTTGTAGAGCATAAATGGAGTACCTGTCTCGATCTGCGCTTCTAAGATGGCGGACCA 32244 Query 155768 GAGGTCACGGGCATTAATTTGCTTGTTGTATCTGCCTTCCGACTCATATTT--CATATAC 155825 | | | || | ||||| | || | | || |||||||| | || | Sbjct 32245 CAATTTCTGAGCTCTGATTTGAGTCTTTGCTTTCCCCAGGTTTTCATATTTTTCGTAAAG 32304 Query 155826 AGCGTTCGGTAATCCTCACCGTAACAATCACTCAGTCCAGGGCACTTATCGGGGCAAAAC 155885 ||| ||| | ||| || ||| | | || || | || || | || Sbjct 32305 AGC-TTCAA-ATTCCAGTCCATAAGTACTGGATAAACCTGGAGTTTCATTAGGAGAGAAG 32362 Query 155886 AGCGACCAAATTTTATTACCGATTACACGCTCCATAAATACATCACTCGCCCA-AATAGC 155944 || ||| |||| | | | || | | |||||||| |||| | |||| || || Sbjct 32363 AGACTCCACATTTGGTCATTCCTCACTCTTTTCATAAATAAATCAGGCACCCACAACAG- 32421 Query 155945 ATAGAAAAGGTCCCTTGCCTTTGACTCCTCATCGCCGTGATTCTTCCGTAGCTCTAAGAA 156004 | ||| | ||||| || | ||||| | || ||||| || || | | | | ||| Sbjct 32422 AGGGAACAAATCCCTAGCTCTAATTTCCTCTTTCCCATGATTTTTACGGATCCCAATGAA 32481 Query 156005 TTCCTCAATATCAGGATGGTGTGGCTCCAGATACATAGCAAAACTACCATTCCTCTTG-- 156062 || ||||||| ||| ||| |||| ||||| || | | |||| ||||| Sbjct 32482 ATCAAAAATATCATTATGCCATGGTTCCAAATACACGGCGATAGCACCAGGTCTCTTATT 32541 Query 156063 -CCACCCTGATCTACATACCGAGCAGTCTTATTGAAGACACCTAGCATAGGAATAATACC 156121 || || ||||||||||| | |||| || ||||| || | | ||| || ||||| || Sbjct 32542 ACCTCCTTGATCTACATATCTGGCAGCATTGTTGAACACTCTCAACATCGGGATAATCCC 32601 Query 156122 ATTGGAAGTGCCATTGGTTCC-GCGAATATGCGAACCAGATGAGCGAACATTATGAATAT 156180 ||| || || ||||| || || | || | | |||| || | | ||| ||||||| Sbjct 32602 ATTAGAGGTCCCATTAGTACCAGAGATGAAAC-TCCCAGTCGATCTGATATTGTGAATAT 32660 Query 156181 GTAGTCCAATACCACCTGACCATTTAGAAATTTGAGCGCATTCCTTTACAGTATTGAAAA 156240 | | ||||||||| |||| |||||| || ||||| ||||| | |||| |||| Sbjct 32661 GCATTCCAATACCTCCTGCATTTTTAGAGATCATCGCGCACTCCTTGAGCGTATCAAAAA 32720 Query 156241 TACCTTCAATAGAATCATCTTCCATTGATAGTAGATAGCACGAACTTAATTGAGGTCGTG 156300 | || || || |||||||| | ||||| | || |||| || ||| || |||| Sbjct 32721 TCCCCTCGATGGAATCATCCTTCATTGCCACAAGGAAGCATGACAGTAACTGGGGTCTCA 32780 Query 156301 GTGTTCCAGCGTTGAATAGTGTAGGTGTTGCATG-AATAAAATACTTATTAGACATATAA 156359 | || |||| ||||| |||||||| || |||| | || | || | || ||||| | Sbjct 32781 GAGTACCAGAATTGAAAAGTGTAGGACTTCCATGTACGAAGAAACGT-TTGGACATCAAT 32839 Query 156360 TCGTATGTCTC 156370 ||||| || || Sbjct 32840 TCGTAAGTTTC 32850 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471817392565707