Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Nakazawaea_20peltata_20[genbank_20GCA_5F001599355.1_202016-03-01]
11 sequences; 11,653,826 total letters
Query= NC_021923.1
Length=140633
Score E
Sequences producing significant alignments: (Bits) Value
seq5 140 3e-28
seq8 123 2e-23
seq1 91.5 1e-13
>seq5
Length=1057341
Score = 140 bits (154), Expect = 3e-28
Identities = 170/232 (73%), Gaps = 0/232 (0%)
Strand=Plus/Minus
Query 24699 ATACGATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAG 24758
|||| ||||| ||||| |||| || || || ||||| |||||||| || || || |||
Sbjct 899718 ATACAATGCAAATCTTCGTTAAGACTCTTACTGGTAAGACTATTACCCTTGAGGTTGAAT 899659
Query 24759 CCACCGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCG 24818
|| | ||||| | || | || || ||||||||||| || ||||| || || || |
Sbjct 899658 CCTCTGACACCATTGACAACGTCAAGTCCAAGATCCAAGATAAGGAAGGTATTCCACCTG 899599
Query 24819 ATCAACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATT 24878
| |||||| | || |||||||| || || || |||| ||| |||| |||| || |
Sbjct 899598 ACCAACAAAGATTAATCTTTGCTGGTAAGCAATTGGAAGATGGTAGAACTTTGTCCGACT 899539
Query 24879 ATAACATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930
| ||||| ||||||||||| || | |||||||| ||| ||||| | || ||
Sbjct 899538 ACAACATCCAAAAGGAATCCACCTTGCACTTGGTTTTGAGATTGAGAGGTGG 899487
Score = 134 bits (148), Expect = 1e-26
Identities = 166/227 (73%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763
||||| ||||| | ||||| |||| ||||| ||||| || | ||||| ||| || ||
Sbjct 899029 ATGCAAATCTTCGTCAAAACCTTAACTGGTAAGACTATCACTTTGGAAGTTGAATCCTCC 898970
Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823
||||| | || | || || || || ||||||||||| || || || || || |||
Sbjct 898969 GACACCATTGACAATGTCAAGTCTAAAATTCAAGACAAAGAGGGTATTCCACCTGACCAA 898910
Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883
||| | ||||| || || || || || |||| ||| |||| |||| ||||| |||
Sbjct 898909 CAAAGATTGATTTTCGCTGGTAAGCAATTGGAAGATGGTAGAACTTTGTCTGATTACAAC 898850
Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930
|||||||||||||| || || ||||| || ||| |||| | |||||
Sbjct 898849 ATTCAAAAGGAATCTACTCTTCACTTAGTCTTGAGATTAAGAGGAGG 898803
Score = 132 bits (146), Expect = 4e-26
Identities = 174/241 (72%), Gaps = 0/241 (0%)
Strand=Plus/Plus
Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762
|||||| || || |||| || || || ||||| || ||||| | ||||| ||| | |
Sbjct 274225 GATGCAAATTTTCGTTAAGACCCTTACAGGTAAGACCATTACCTTGGAAGTTGAATCTTC 274284
Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822
||||| | || | || || |||||||||||||| ||||| || || || || ||
Sbjct 274285 TGACACTATTGACAACGTCAAGTCCAAGATCCAAGACAAGGAAGGTATCCCACCTGACCA 274344
Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882
|||| | ||||||||||| || || || | ||||| |||| | |||| || || ||
Sbjct 274345 ACAAAGATTGATCTTTGCTGGTAAGCAATTAGAGGACGGCAGAACCTTGTCCGACTACAA 274404
Query 24883 CATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGCGGAACTGAGCC 24942
||| ||||||||||| || | |||||||| ||| ||||| | || || | | ||| ||
Sbjct 274405 CATCCAAAAGGAATCCACTTTGCACTTGGTTTTGAGATTGAGAGGTGGTGTTATTGAACC 274464
Query 24943 A 24943
|
Sbjct 274465 A 274465
Score = 131 bits (144), Expect = 2e-25
Identities = 165/227 (73%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763
||||| || || | || || | |||||||| || ||||| || || || || | ||
Sbjct 899485 ATGCAAATTTTCGTCAAGACTTTGACCGGTAAGACCATTACCCTTGAGGTTGAGTCTTCC 899426
Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823
||||| | || | || || ||||| |||||||| ||||| || ||||| ||||||
Sbjct 899425 GACACCATTGACAATGTTAAGTCTAAGATTCAAGACAAGGAAGGTATTCCTCCAGATCAA 899366
Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883
||| | ||||| ||||| || || || | ||||| |||| | |||| || || |||
Sbjct 899365 CAAAGATTGATTTTTGCTGGTAAGCAATTAGAGGACGGCAGAACCTTGTCTGACTACAAC 899306
Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930
|||||||||||||| || || |||||||| || ||||| | || ||
Sbjct 899305 ATTCAAAAGGAATCTACCCTTCACTTGGTCTTAAGATTGAGAGGTGG 899259
Score = 120 bits (132), Expect = 3e-22
Identities = 165/228 (72%), Gaps = 2/228 (1%)
Strand=Plus/Minus
Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763
||||| |||||| |||| || | || ||||| ||||| || | ||||| ||| | |
Sbjct 899257 ATGCAAATCTTTGTTAAGACTTTGACTGGTAAGACTATCACTTTGGAAGTTGAATCTTCT 899198
Query 24764 GACACAGTAGA-AACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822
||||| | || || | ||| | ||| || ||||||||||| || || || || || ||
Sbjct 899197 GACACTATTGACAATGTTAAGTCCAAA-ATTCAAGACAAAGAGGGTATTCCACCTGACCA 899139
Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882
|||| | || |||||||| || || || |||| ||| |||| | || || || ||
Sbjct 899138 ACAAAGATTAATCTTTGCTGGTAAGCAATTGGAAGATGGTAGAACTTTATCTGACTACAA 899079
Query 24883 CATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930
||| ||||||||||| || ||||||| || ||| ||||| | || ||
Sbjct 899078 CATCCAAAAGGAATCCACTTTACACTTAGTTTTGAGATTGAGAGGTGG 899031
>seq8
Length=648860
Score = 123 bits (136), Expect = 2e-23
Identities = 166/231 (72%), Gaps = 0/231 (0%)
Strand=Plus/Minus
Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762
|||||| || || |||| || | || ||||| || ||||| | ||||| ||| | |
Sbjct 616809 GATGCAAATTTTCGTTAAGACTTTGACAGGTAAGACCATTACCTTGGAAGTTGAATCTTC 616750
Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822
||||| | || | || || |||||||||||||| || || || || || || ||
Sbjct 616749 TGACACCATTGACAACGTCAAGTCCAAGATCCAAGACAAGGAGGGTATCCCACCTGACCA 616690
Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882
|||| | ||||||||||| || || || |||||||| |||| |||| || || ||
Sbjct 616689 ACAAAGATTGATCTTTGCTGGTAAGCAATTGGAGGATGGTAGAACTTTGTCTGACTACAA 616630
Query 24883 CATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGCGG 24933
||| |||||||| || || | |||||||| ||| ||||| | || || ||
Sbjct 616629 CATCCAAAAGGAGTCCACCTTGCACTTGGTCTTGAGATTGAGAGGTGGTGG 616579
>seq1
Length=2934271
Score = 91.5 bits (100), Expect = 1e-13
Identities = 361/559 (65%), Gaps = 22/559 (4%)
Strand=Plus/Minus
Query 138172 ATGGCATCAGCGGCTGGTTTCGTTCTCAGATAATACATTCCCGTTTTTAACCCATTTTCC 138231
|||||| ||| ||| | || ||||||| || ||||| || || || || || || | |
Sbjct 86988 ATGGCAGCAGAGGCGGCTTGAGTTCTCAAGTAGTACATACCGGTCTTCAAACCCTTCTTC 86929
Query 138232 CAGGCGTACATGTGTATCGAAGTGAG-TAACGCGTAAGTCGGTTTCGCCA-GAAAT--AT 138287
|| |||| | ||| || || | | || | || | || ||| || || ||
Sbjct 86928 CAACCGTAGAAGTGCATACTGGTCAACTTACCCATAGTTGGG----GCCTTGATATGAAT 86873
Query 138288 GTTAAACGATTGACTCTGATCGATGAAAGCGCCTCGATCAATGGCCATGTTAATTAAATT 138347
|| || |||||| ||||| ||| | || || || || ||||||| ||| | |
Sbjct 86872 ATTCAAAGATTGAGATTGATCAATGTAGGCACCACGGTCGGCAGCCATGTCAATGATGGT 86813
Query 138348 TTTACTTTT----CATCTCCCACACGGTCTTGTATAGAT-CACGAATATGTCGCGGTATT 138402
||||| || ||||| ||||||||||| | | | ||| || || |
Sbjct 86812 ----CTTTTGAGACAATTCCCAAACGGTCTTGTAGATTTTCTTCAATTCATCTGGGATGT 86757
Query 138403 GTTGCAATATTTTGAATGCTCCCGTTGGCCGCAATGATGCGATTTCTCATGTCATCGTTG 138462
| |||| |||||||| ||||| | | |||||| | || ||||| |||||
Sbjct 86756 TTGGCAAG-TTTTGAATAGATCCGTTATCGGAAATGATATGGTTCTTCATGGAGTCGTTC 86698
Query 138463 TACAGATTCAACTTGATCAAGTCGTTTATCAGATATCTGTTTATGACCTGAAATTCACCG 138522
||| ||| | | ||| || ||| || ||| ||| | | || |||||||||
Sbjct 86697 CACAATCCCAAATCAACCAAATCTCTTAACAAGTATGGGTTGACAATTTGGAATTCACCG 86638
Query 138523 GCCAATACTCGACGAACGTAAATGTTGTTGGTGAAAGGCTCAAACGATTCGTTGTTTCCC 138582
||||| |||| | | ||||||||| ||| | ||||| || ||||||||| |||
Sbjct 86637 GCCAACACTCTTCTAGAGTAAATGTTAGAAGTGTACGGCTCGAAACATTCGTTGTAACCC 86578
Query 138583 AGAATCTGAGCCGTGGTCGCGGTCGGCATGTACGCCACCAAAAGAGAATTCCGTAAACCG 138642
| || |||| || | || || ||||| || ||||| | ||| || | | ||||
Sbjct 86577 AAGATTTGAGAAGTAGAAGCAGTTGGCATTGGAGCAACCAACAAAGAGTTTCTCATACCG 86518
Query 138643 TG--AAGCTTGATTCGTTCCTTGAGCGACGACCAGTCCCACAAATCGCTAGGTTTTTTGT 138700
|| |||| | || ||||| | | |||||||||||| ||| | || ||| |||
Sbjct 86517 TGCTTAGCT--AATCTCTCCTTCAACAGATCCCAGTCCCACAAGTCGGTTGGCTTTCTGT 86460
Query 138701 TCCACATATCGTACTGTAA 138719
||||| |||| | |||||
Sbjct 86459 CCCACAAATCGAATTGTAA 86441
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 449897538139080
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |