Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nakazawaea_20peltata_20[genbank_20GCA_5F001599355.1_202016-03-01] 11 sequences; 11,653,826 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq5 140 3e-28 seq8 123 2e-23 seq1 91.5 1e-13 >seq5 Length=1057341 Score = 140 bits (154), Expect = 3e-28 Identities = 170/232 (73%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 24699 ATACGATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAG 24758 |||| ||||| ||||| |||| || || || ||||| |||||||| || || || ||| Sbjct 899718 ATACAATGCAAATCTTCGTTAAGACTCTTACTGGTAAGACTATTACCCTTGAGGTTGAAT 899659 Query 24759 CCACCGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCG 24818 || | ||||| | || | || || ||||||||||| || ||||| || || || | Sbjct 899658 CCTCTGACACCATTGACAACGTCAAGTCCAAGATCCAAGATAAGGAAGGTATTCCACCTG 899599 Query 24819 ATCAACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATT 24878 | |||||| | || |||||||| || || || |||| ||| |||| |||| || | Sbjct 899598 ACCAACAAAGATTAATCTTTGCTGGTAAGCAATTGGAAGATGGTAGAACTTTGTCCGACT 899539 Query 24879 ATAACATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 | ||||| ||||||||||| || | |||||||| ||| ||||| | || || Sbjct 899538 ACAACATCCAAAAGGAATCCACCTTGCACTTGGTTTTGAGATTGAGAGGTGG 899487 Score = 134 bits (148), Expect = 1e-26 Identities = 166/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| ||||| | ||||| |||| ||||| ||||| || | ||||| ||| || || Sbjct 899029 ATGCAAATCTTCGTCAAAACCTTAACTGGTAAGACTATCACTTTGGAAGTTGAATCCTCC 898970 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || || || ||||||||||| || || || || || ||| Sbjct 898969 GACACCATTGACAATGTCAAGTCTAAAATTCAAGACAAAGAGGGTATTCCACCTGACCAA 898910 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 ||| | ||||| || || || || || |||| ||| |||| |||| ||||| ||| Sbjct 898909 CAAAGATTGATTTTCGCTGGTAAGCAATTGGAAGATGGTAGAACTTTGTCTGATTACAAC 898850 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 |||||||||||||| || || ||||| || ||| |||| | ||||| Sbjct 898849 ATTCAAAAGGAATCTACTCTTCACTTAGTCTTGAGATTAAGAGGAGG 898803 Score = 132 bits (146), Expect = 4e-26 Identities = 174/241 (72%), Gaps = 0/241 (0%) Strand=Plus/Plus Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762 |||||| || || |||| || || || ||||| || ||||| | ||||| ||| | | Sbjct 274225 GATGCAAATTTTCGTTAAGACCCTTACAGGTAAGACCATTACCTTGGAAGTTGAATCTTC 274284 Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 ||||| | || | || || |||||||||||||| ||||| || || || || || Sbjct 274285 TGACACTATTGACAACGTCAAGTCCAAGATCCAAGACAAGGAAGGTATCCCACCTGACCA 274344 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 |||| | ||||||||||| || || || | ||||| |||| | |||| || || || Sbjct 274345 ACAAAGATTGATCTTTGCTGGTAAGCAATTAGAGGACGGCAGAACCTTGTCCGACTACAA 274404 Query 24883 CATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGCGGAACTGAGCC 24942 ||| ||||||||||| || | |||||||| ||| ||||| | || || | | ||| || Sbjct 274405 CATCCAAAAGGAATCCACTTTGCACTTGGTTTTGAGATTGAGAGGTGGTGTTATTGAACC 274464 Query 24943 A 24943 | Sbjct 274465 A 274465 Score = 131 bits (144), Expect = 2e-25 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| || || | || || | |||||||| || ||||| || || || || | || Sbjct 899485 ATGCAAATTTTCGTCAAGACTTTGACCGGTAAGACCATTACCCTTGAGGTTGAGTCTTCC 899426 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || ||||| |||||||| ||||| || ||||| |||||| Sbjct 899425 GACACCATTGACAATGTTAAGTCTAAGATTCAAGACAAGGAAGGTATTCCTCCAGATCAA 899366 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 ||| | ||||| ||||| || || || | ||||| |||| | |||| || || ||| Sbjct 899365 CAAAGATTGATTTTTGCTGGTAAGCAATTAGAGGACGGCAGAACCTTGTCTGACTACAAC 899306 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 |||||||||||||| || || |||||||| || ||||| | || || Sbjct 899305 ATTCAAAAGGAATCTACCCTTCACTTGGTCTTAAGATTGAGAGGTGG 899259 Score = 120 bits (132), Expect = 3e-22 Identities = 165/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| |||||| |||| || | || ||||| ||||| || | ||||| ||| | | Sbjct 899257 ATGCAAATCTTTGTTAAGACTTTGACTGGTAAGACTATCACTTTGGAAGTTGAATCTTCT 899198 Query 24764 GACACAGTAGA-AACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 ||||| | || || | ||| | ||| || ||||||||||| || || || || || || Sbjct 899197 GACACTATTGACAATGTTAAGTCCAAA-ATTCAAGACAAAGAGGGTATTCCACCTGACCA 899139 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 |||| | || |||||||| || || || |||| ||| |||| | || || || || Sbjct 899138 ACAAAGATTAATCTTTGCTGGTAAGCAATTGGAAGATGGTAGAACTTTATCTGACTACAA 899079 Query 24883 CATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 ||| ||||||||||| || ||||||| || ||| ||||| | || || Sbjct 899078 CATCCAAAAGGAATCCACTTTACACTTAGTTTTGAGATTGAGAGGTGG 899031 >seq8 Length=648860 Score = 123 bits (136), Expect = 2e-23 Identities = 166/231 (72%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762 |||||| || || |||| || | || ||||| || ||||| | ||||| ||| | | Sbjct 616809 GATGCAAATTTTCGTTAAGACTTTGACAGGTAAGACCATTACCTTGGAAGTTGAATCTTC 616750 Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 ||||| | || | || || |||||||||||||| || || || || || || || Sbjct 616749 TGACACCATTGACAACGTCAAGTCCAAGATCCAAGACAAGGAGGGTATCCCACCTGACCA 616690 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 |||| | ||||||||||| || || || |||||||| |||| |||| || || || Sbjct 616689 ACAAAGATTGATCTTTGCTGGTAAGCAATTGGAGGATGGTAGAACTTTGTCTGACTACAA 616630 Query 24883 CATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGCGG 24933 ||| |||||||| || || | |||||||| ||| ||||| | || || || Sbjct 616629 CATCCAAAAGGAGTCCACCTTGCACTTGGTCTTGAGATTGAGAGGTGGTGG 616579 >seq1 Length=2934271 Score = 91.5 bits (100), Expect = 1e-13 Identities = 361/559 (65%), Gaps = 22/559 (4%) Strand=Plus/Minus Query 138172 ATGGCATCAGCGGCTGGTTTCGTTCTCAGATAATACATTCCCGTTTTTAACCCATTTTCC 138231 |||||| ||| ||| | || ||||||| || ||||| || || || || || || | | Sbjct 86988 ATGGCAGCAGAGGCGGCTTGAGTTCTCAAGTAGTACATACCGGTCTTCAAACCCTTCTTC 86929 Query 138232 CAGGCGTACATGTGTATCGAAGTGAG-TAACGCGTAAGTCGGTTTCGCCA-GAAAT--AT 138287 || |||| | ||| || || | | || | || | || ||| || || || Sbjct 86928 CAACCGTAGAAGTGCATACTGGTCAACTTACCCATAGTTGGG----GCCTTGATATGAAT 86873 Query 138288 GTTAAACGATTGACTCTGATCGATGAAAGCGCCTCGATCAATGGCCATGTTAATTAAATT 138347 || || |||||| ||||| ||| | || || || || ||||||| ||| | | Sbjct 86872 ATTCAAAGATTGAGATTGATCAATGTAGGCACCACGGTCGGCAGCCATGTCAATGATGGT 86813 Query 138348 TTTACTTTT----CATCTCCCACACGGTCTTGTATAGAT-CACGAATATGTCGCGGTATT 138402 ||||| || ||||| ||||||||||| | | | ||| || || | Sbjct 86812 ----CTTTTGAGACAATTCCCAAACGGTCTTGTAGATTTTCTTCAATTCATCTGGGATGT 86757 Query 138403 GTTGCAATATTTTGAATGCTCCCGTTGGCCGCAATGATGCGATTTCTCATGTCATCGTTG 138462 | |||| |||||||| ||||| | | |||||| | || ||||| ||||| Sbjct 86756 TTGGCAAG-TTTTGAATAGATCCGTTATCGGAAATGATATGGTTCTTCATGGAGTCGTTC 86698 Query 138463 TACAGATTCAACTTGATCAAGTCGTTTATCAGATATCTGTTTATGACCTGAAATTCACCG 138522 ||| ||| | | ||| || ||| || ||| ||| | | || ||||||||| Sbjct 86697 CACAATCCCAAATCAACCAAATCTCTTAACAAGTATGGGTTGACAATTTGGAATTCACCG 86638 Query 138523 GCCAATACTCGACGAACGTAAATGTTGTTGGTGAAAGGCTCAAACGATTCGTTGTTTCCC 138582 ||||| |||| | | ||||||||| ||| | ||||| || ||||||||| ||| Sbjct 86637 GCCAACACTCTTCTAGAGTAAATGTTAGAAGTGTACGGCTCGAAACATTCGTTGTAACCC 86578 Query 138583 AGAATCTGAGCCGTGGTCGCGGTCGGCATGTACGCCACCAAAAGAGAATTCCGTAAACCG 138642 | || |||| || | || || ||||| || ||||| | ||| || | | |||| Sbjct 86577 AAGATTTGAGAAGTAGAAGCAGTTGGCATTGGAGCAACCAACAAAGAGTTTCTCATACCG 86518 Query 138643 TG--AAGCTTGATTCGTTCCTTGAGCGACGACCAGTCCCACAAATCGCTAGGTTTTTTGT 138700 || |||| | || ||||| | | |||||||||||| ||| | || ||| ||| Sbjct 86517 TGCTTAGCT--AATCTCTCCTTCAACAGATCCCAGTCCCACAAGTCGGTTGGCTTTCTGT 86460 Query 138701 TCCACATATCGTACTGTAA 138719 ||||| |||| | ||||| Sbjct 86459 CCCACAAATCGAATTGTAA 86441 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449897538139080