Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nakazawaea_20peltata_20[genbank_20GCA_5F001599355.1_202016-03-01] 11 sequences; 11,653,826 total letters Query= NC_023611.1 Length=198533 Score E Sequences producing significant alignments: (Bits) Value seq9 120 4e-22 seq7 93.3 5e-14 seq1 89.7 7e-13 seq10 82.4 1e-10 >seq9 Length=588574 Score = 120 bits (132), Expect = 4e-22 Identities = 181/255 (71%), Gaps = 2/255 (1%) Strand=Plus/Plus Query 193794 ATTTTTATAGGGCCAACTTATTATCATCGTCTTAAACATATGGTTAAGGATAAAATGCAT 193853 ||||| | || |||| |||||| || | || ||||||||| ||||||||||||| Sbjct 218707 ATTTTCTTCGGACCAATTTATTACCAAAAGTTGAAGCATATGGTTTTGGATAAAATGCAT 218766 Query 193854 GCTAGAAGTCATGGAC-AAGTGACTACTTTACATCGACAACCAAATTGTGGTCGTTCTCA 193912 || ||| || ||| | ||| | ||| || ||||||| | | |||||||| Sbjct 218767 GCCAGAGCTCGTGGTCCAAGAGCTGTCTTGACCA-GACAACCTACTGAAGGTCGTTCGAG 218825 Query 193913 AGGTGGAGGTTTAAGATTTGGAGAAATGGAGAAAGACTGTATTTTAGTTCATGGTGCTAC 193972 || ||| ||||| ||||| ||||||||||||| ||| ||| | | | | |||| || | Sbjct 218826 AGATGGTGGTTTGAGATTGGGAGAAATGGAGAGAGATTGTGTCATTGCTTATGGAGCCTC 218885 Query 193973 TCAATTCTTGAATGAAAGAATGTTTTTGTATTCTGATCCTTTTCAAGTCGATGTTTGCAC 194032 |||||| ||| || ||| | | ||| |||||||| || | || |||||||| | Sbjct 218886 TCAATTGTTGTTGGAGAGATTAATGTTGAGTTCTGATCTGTTCGACGTTGATGTTTGTAA 218945 Query 194033 AGAATGTGGTATGAT 194047 ||||||||| |||| Sbjct 218946 CGAATGTGGTTTGAT 218960 >seq7 Length=809317 Score = 93.3 bits (102), Expect = 5e-14 Identities = 140/194 (72%), Gaps = 4/194 (2%) Strand=Plus/Plus Query 193803 GGGCCAACTTATTATCATCGTCTTAAACATATGGTTAAGGATAAAATGCATGCTAGAAGT 193862 || ||||||||||| || ||||||| |||||||||| | ||||| || ||||| || || Sbjct 676553 GGACCAACTTATTACCAACGTCTTAGACATATGGTTGACGATAAGATCCATGCCAG-AGC 676611 Query 193863 CA-TGGACAAGTGACTACTTTACATC-GACAACCAAATTGTGGTCGTTCTCAAGGTGGAG 193920 || |||| ||| | | | | | | |||||||| ||| | || || ||| | Sbjct 676612 CAGAGGACCAGT-TCAAATGTTGACCAGACAACCAGTGGAAGGTAGATCCAGAGATGGTG 676670 Query 193921 GTTTAAGATTTGGAGAAATGGAGAAAGACTGTATTTTAGTTCATGGTGCTACTCAATTCT 193980 |||||||||| ||||| ||||||| ||| ||||| | | || ||||| | |||| Sbjct 676671 GTTTAAGATTCGGAGAGATGGAGAGAGATTGTATGATTGCGCACGGTGCGGCCGGGTTCT 676730 Query 193981 TGAATGAAAGAATG 193994 |||| |||||| || Sbjct 676731 TGAAAGAAAGATTG 676744 >seq1 Length=2934271 Score = 89.7 bits (98), Expect = 7e-13 Identities = 153/222 (69%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 168528 GAACTTTTATGGGTTATAAAAGGTTCAACTGATTCAAAACAATTAAATGATATAGGTGTT 168587 ||| | |||||| | || ||||| |||||| || ||||| || | ||| || Sbjct 113313 GAATTGTTATGGTTCATTGAAGGTAATACTGATGGTAAGAAATTATCCGAGAAAGGAGTC 113254 Query 168588 AAAGTTTGGAACGATAATGGTTCTCGTGAATTTTTAGATTTATGTGGTTTTACCGAAAGA 168647 || ||||| | | || || || ||||||| || ||| | ||||| ||| | ||| Sbjct 113253 AAGATTTGGGAAGGGAACGGGTCACGTGAATACTTGGATAAGTTAGGTTTAACCCATAGA 113194 Query 168648 AAAGAAGGTGATTTAGGTCCAATTTATGGATTTCAATGGAGACATGCAGGAGCTCAATAT 168707 | ||| |||||||| || || ||||||| || |||||||||||| || || |||| Sbjct 113193 AGAGAGGGTGATTTGGGACCGGTTTATGGGTTCCAATGGAGACATTTCGGTGCCGAATAC 113134 Query 168708 ATTGACTGTGATACAGATTACACCGGACAAGGAGTAGACCAA 168749 | || |||||| ||||| | || |||||| |||||| Sbjct 113133 AAAGATTGTGATCTGGATTATTCAGGTCAAGGATATGACCAA 113092 >seq10 Length=492918 Score = 82.4 bits (90), Expect = 1e-10 Identities = 138/200 (69%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 162998 ATTAAGGTTGCTCAATTAAGTGGGTATGTTGCGGAACAAACAGACTATAAACACGGTGAA 163057 || || ||||||||||| || ||||| ||| | |||| ||| | || || ||| Sbjct 338473 ATCAAAGTTGCTCAATTGGCAGGTTATGTCAGTGAAAAGACAGGATATCACCATGGAGAA 338414 Query 163058 CAAAATTTATGTGAAACTATAATTAAGTTTGCCCAAGATTTTGTTGGTACAAATAATATA 163117 || |||| | |||| || ||| || |||||||||||||| ||| | |||||| | Sbjct 338413 CAGTCTTTAGTTCAAACAATCATTGGTTTGGCCCAAGATTTTGTCGGTTCCAATAATCTT 338354 Query 163118 GCATTACTTGAACCTGATGGTCAATTTGGTACCAGATTAGAAGGAGGTAAAGATTCTGCG 163177 || ||| | ||| |||| || ||||||||| | || || |||||| | | Sbjct 338353 TACTTGCTTAATCCTAATGGATGTTTCGGTACCAGAACAACTGGTGGAAAAGATGCCTCT 338294 Query 163178 GCATCAAGATATATTTATAC 163197 || |||||||||||| ||| Sbjct 338293 GCTGCAAGATATATTTTTAC 338274 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 635177512663080