Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Nakazawaea_20peltata_20[genbank_20GCA_5F001599355.1_202016-03-01]
11 sequences; 11,653,826 total letters
Query= NC_027778.1
Length=124244
Score E
Sequences producing significant alignments: (Bits) Value
seq4 147 2e-30
seq7 84.2 2e-11
>seq4
Length=1221263
Score = 147 bits (162), Expect = 2e-30
Identities = 400/601 (67%), Gaps = 16/601 (3%)
Strand=Plus/Minus
Query 43697 AGGTTTGTCGTGTTTCCAATTCAATATCATGACATATGGCAAATGTACAAAAAAGCACAG 43756
|| || ||| |||| ||||| | || || || || |||||||||||||| || || ||
Sbjct 1137783 AGATTCGTCTTGTTCCCAATCAAGTACCACGAAATCTGGCAAATGTACAAGAAGGCCGAG 1137724
Query 43757 GCGTCATTTTGGACAGCAGAAGAAGTTGATTTGACTAAAGACTTAGCA--CATTGGATTG 43814
|| || || ||||| || || || |||| || | ||| || || || | ||||
Sbjct 1137723 GCTTCTTTCTGGACCGCCGAGGAGATTGACTTAAGTAAGGA--TATCATTGACTGGAAGA 1137666
Query 43815 C--ATTAAAACCACAA-GAAAAACATTTTATATCTTTGGTTTTGGCGTTTTTTGCTGCGA 43871
| | | ||| |||| || | | |||| || || |||||||| || || || ||
Sbjct 1137665 CCAAGTTGAACGACAACGAGAGATATTTCATCTCCAGAGTTTTGGCCTTCTTCGCCGCCT 1137606
Query 43872 GCGACGGGATAGTCAATGAAAATTTGGTT-AGTCGGTTTGCGCAAGAAGTTCAATTACCA 43930
||||| || ||||| || || |||||| || | | || || |||||| | ||
Sbjct 1137605 CTGACGGTATTGTCAACGAGAACTTGGTTGAGAACTTCTCTGC-CGAGGTTCAACTTCCT 1137547
Query 43931 GAAGCACGATGTTTTTATGGGTTTCAAATTGCCATAGAAAATATTCATTCGGAAATGTAC 43990
||| ||||| || || || |||||| || || || || || || || | |||
Sbjct 1137546 GAACTGAAGTGTTTCTACGGTTTCCAAATTATGATGGAGAACATCCACTCTGAGACTTAC 1137487
Query 43991 AGTCTTCTGATAGATACGTACATCAAAGATGGGCACGAGAAGC--ATCGATTGTTTAATG 44048
| | |||| || || |||||||| ||| || ||||| | ||||| ||||
Sbjct 1137486 TCTTTGTTGATTGACACCTACATCAAGGAT--CCAAAGGAAGCTGACTTCTTGTTCAATG 1137429
Query 44049 CGATAGAAACAGTACCTGCGATTAAACATAAAGCAGACTGGGCCCTTAAATGGATAAAT- 44107
| || || || | || || || | || || |||||||| | | |||||| |||
Sbjct 1137428 CCATCGAGACTATTCCATGTATCAAGGAGAAGGCCGACTGGGCTTTGAGATGGATCAATG 1137369
Query 44108 TCAA--ATGATTCTTTTGGAGAACGACTTGTCGCGTTTGCAGTTGTGGAAGGCATTTTCT 44165
||| | | || || || || || | || || ||||| | || ||||| || ||||
Sbjct 1137368 ACAAGGACGCTTTGTTCGGTGAGAGATTGGTTGCCTTTGCTGCCGTTGAAGGTATCTTCT 1137309
Query 44166 TTTCAGGATCGTTTGCGGCCATATTTTGGTTAAAGAAACGAGGTTTGATGCCTGGGTTGA 44225
| || || ||||| | || || ||||| ||||| ||||||| ||||| || ||||
Sbjct 1137308 TCAGTGGTTCCTTTGCTTCTATCTTCTGGTTGAAGAAGAGAGGTTTAATGCCAGGTTTGA 1137249
Query 44226 CGTTTTCAAATGAGTTAATAAGTCGTGATGAAGGCTTACATTGCGATTTTGCTTGCTTGT 44285
| || || || ||||| || ||| | |||||||| | || ||| ||||| || ||||
Sbjct 1137248 CCTTCTCTAACGAGTTGATCAGTAGAGATGAAGGTATGCACACCGACTTTGCCTGTTTGT 1137189
Query 44286 T 44286
|
Sbjct 1137188 T 1137188
Score = 114 bits (126), Expect = 1e-20
Identities = 368/569 (65%), Gaps = 18/569 (3%)
Strand=Plus/Minus
Query 19232 AAGACATGCAAATTGGAGGATTGAGTAAAGAGTTTTCTGAAATCTTTCGTAGAGCATTTG 19291
|||| ||| ||||||||| || || ||||| || | || || | ||||| ||||
Sbjct 1014559 AAGATATGGGAATTGGAGGTTTAGATACTGAGTTCACTCAGATTTTCAGAAGAGCCTTTG 1014500
Query 19292 TGTCGCGTGTTTTTTCTGCAGATGTCATTAAACAATTGGGATGTAAACATGTTCGTGGAC 19351
||| | | || | |||| | ||| || |||| || || |||||| ||
Sbjct 1014499 CCTCGAGAATCTTCCCCCCAGAATTGATTGAAAAATTAGGTATTAGTCATGTTAAAGG-- 1014442
Query 19352 TTTTGCTTT---ATGGGCCACCGGGTTGTGGAAAAACATTAATTGCGAGAGAACTTAGTA 19408
| |||||| |||| || || ||| ||| || || || ||||| | || || | |
Sbjct 1014441 -TATGCTTTTATATGGACCTCCAGGTACTGGTAAGACGTTGATTGCACGTCAAATTGGAA 1014383
Query 19409 AATTACTTA---CAAAACAACCTCCCAAAATTGTAAATGGTCCTGAAATCTTAAATAAAT 19465
| | | | | || |||| || ||||| ||||| |||||||| || | |||||
Sbjct 1014382 AGATGTTGAATGCTAATGAACCA---AAGATTGTTAATGGACCTGAAATTTTGAGTAAAT 1014326
Query 19466 ATGTAGGTCAATCGGAAGAAAATGTACGACGTTTGTTTGCTGACGCTGAAGAAGAACAAA 19525
| || ||| ||||| || ||| | || | || || || || || | ||| | |
Sbjct 1014325 ACGTTGGTTCTTCGGAGGAGAATATCAGAAAGCTTTTCGCCGATGCCGAGGCCGAATATA 1014266
Query 19526 AACGTTTAGGGCGCAAAAGTTCTTTGCACATTATAATACTAGATGAATTGGACGCAATCT 19585
| ||| || ||||||||| || || || | ||||| |||||| | | |
Sbjct 1014265 AGAAAAAAGGTGATGAATCTTCTTTGCATATCATTATTTTCGATGAGTTGGACTCGGTTT 1014206
Query 19586 GTAAGCAAAGAGGTTCTGG------TGTAAATGGAGTACATGACACTGTTGTCAATCAAC 19639
|| |||||||||||| | || | |||||| ||| | |||||| |||||||
Sbjct 1014205 TCAAACAAAGAGGTTCTAGAGGTGATGGTACTGGAGTGGCTGATAATGTTGTTAATCAAC 1014146
Query 19640 TCCTGTCAAAATTAGACGGTGTTAACCAACTGAATAATATTTTAGTTATTGGCATGACTA 19699
| | ||| | || ||||| | ||||| ||||| |||||||| ||||| |||||||
Sbjct 1014145 TTTTACTGAAAATGGATGGTGTGGATCAACTTAATAACATTTTAGTCATTGGAATGACTA 1014086
Query 19700 ATAGACTGGAATTAATAGACAGCGCCTTATTACGACCCGGTCGGTTGGAAATAAAGATCG 19759
||||| || || || || || | || || || || || || ||| | | | |
Sbjct 1014085 ATAGAAGAGATTTGATCGATGAGGCTCTTTTGCGTCCTGGACGTTTCGAAGTCCAAGTTG 1014026
Query 19760 AAATTAACTTACCCGATGAATGTGGACGT 19788
| ||| | ||||| |||||| ||| |||
Sbjct 1014025 AGATTCATTTACCTGATGAAGCTGGTCGT 1013997
>seq7
Length=809317
Score = 84.2 bits (92), Expect = 2e-11
Identities = 106/146 (73%), Gaps = 0/146 (0%)
Strand=Plus/Minus
Query 115035 GTCATACGTGAAGGAAAAGCATGCGGATTAATAATCAAGTCTGGCACTAACCCGTCGGCT 115094
|||||||| || |||| ||| ||||| || |||||||| ||||| || | || |||||
Sbjct 676356 GTCATACGAGATGGAATAGCGTGCGGGTTGATAATCAAATCTGGAACCATACCTTCGGCG 676297
Query 115095 GTGAACGGCATGTCGTGCTGATCGTACATCATTCCACAAGTTCCTTTTTGAGCGGTAAAC 115154
||||| |||| || | | ||| | || ||| ||| ||||||||| || |
Sbjct 676296 GTGAAAAGCATATCTTCATTTCTGTAAGTAATACCAATAGTACCTTTTTGACCGTGACGA 676237
Query 115155 GATGCAAATTTATCACCAATCTCAGG 115180
|| ||||| ||||||||||| | |||
Sbjct 676236 GAAGCAAACTTATCACCAATTTGAGG 676211
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 397455946716055
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |