Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nakazawaea_20peltata_20[genbank_20GCA_5F001599355.1_202016-03-01] 11 sequences; 11,653,826 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq4 147 2e-30 seq7 84.2 2e-11 >seq4 Length=1221263 Score = 147 bits (162), Expect = 2e-30 Identities = 400/601 (67%), Gaps = 16/601 (3%) Strand=Plus/Minus Query 43697 AGGTTTGTCGTGTTTCCAATTCAATATCATGACATATGGCAAATGTACAAAAAAGCACAG 43756 || || ||| |||| ||||| | || || || || |||||||||||||| || || || Sbjct 1137783 AGATTCGTCTTGTTCCCAATCAAGTACCACGAAATCTGGCAAATGTACAAGAAGGCCGAG 1137724 Query 43757 GCGTCATTTTGGACAGCAGAAGAAGTTGATTTGACTAAAGACTTAGCA--CATTGGATTG 43814 || || || ||||| || || || |||| || | ||| || || || | |||| Sbjct 1137723 GCTTCTTTCTGGACCGCCGAGGAGATTGACTTAAGTAAGGA--TATCATTGACTGGAAGA 1137666 Query 43815 C--ATTAAAACCACAA-GAAAAACATTTTATATCTTTGGTTTTGGCGTTTTTTGCTGCGA 43871 | | | ||| |||| || | | |||| || || |||||||| || || || || Sbjct 1137665 CCAAGTTGAACGACAACGAGAGATATTTCATCTCCAGAGTTTTGGCCTTCTTCGCCGCCT 1137606 Query 43872 GCGACGGGATAGTCAATGAAAATTTGGTT-AGTCGGTTTGCGCAAGAAGTTCAATTACCA 43930 ||||| || ||||| || || |||||| || | | || || |||||| | || Sbjct 1137605 CTGACGGTATTGTCAACGAGAACTTGGTTGAGAACTTCTCTGC-CGAGGTTCAACTTCCT 1137547 Query 43931 GAAGCACGATGTTTTTATGGGTTTCAAATTGCCATAGAAAATATTCATTCGGAAATGTAC 43990 ||| ||||| || || || |||||| || || || || || || || | ||| Sbjct 1137546 GAACTGAAGTGTTTCTACGGTTTCCAAATTATGATGGAGAACATCCACTCTGAGACTTAC 1137487 Query 43991 AGTCTTCTGATAGATACGTACATCAAAGATGGGCACGAGAAGC--ATCGATTGTTTAATG 44048 | | |||| || || |||||||| ||| || ||||| | ||||| |||| Sbjct 1137486 TCTTTGTTGATTGACACCTACATCAAGGAT--CCAAAGGAAGCTGACTTCTTGTTCAATG 1137429 Query 44049 CGATAGAAACAGTACCTGCGATTAAACATAAAGCAGACTGGGCCCTTAAATGGATAAAT- 44107 | || || || | || || || | || || |||||||| | | |||||| ||| Sbjct 1137428 CCATCGAGACTATTCCATGTATCAAGGAGAAGGCCGACTGGGCTTTGAGATGGATCAATG 1137369 Query 44108 TCAA--ATGATTCTTTTGGAGAACGACTTGTCGCGTTTGCAGTTGTGGAAGGCATTTTCT 44165 ||| | | || || || || || | || || ||||| | || ||||| || |||| Sbjct 1137368 ACAAGGACGCTTTGTTCGGTGAGAGATTGGTTGCCTTTGCTGCCGTTGAAGGTATCTTCT 1137309 Query 44166 TTTCAGGATCGTTTGCGGCCATATTTTGGTTAAAGAAACGAGGTTTGATGCCTGGGTTGA 44225 | || || ||||| | || || ||||| ||||| ||||||| ||||| || |||| Sbjct 1137308 TCAGTGGTTCCTTTGCTTCTATCTTCTGGTTGAAGAAGAGAGGTTTAATGCCAGGTTTGA 1137249 Query 44226 CGTTTTCAAATGAGTTAATAAGTCGTGATGAAGGCTTACATTGCGATTTTGCTTGCTTGT 44285 | || || || ||||| || ||| | |||||||| | || ||| ||||| || |||| Sbjct 1137248 CCTTCTCTAACGAGTTGATCAGTAGAGATGAAGGTATGCACACCGACTTTGCCTGTTTGT 1137189 Query 44286 T 44286 | Sbjct 1137188 T 1137188 Score = 114 bits (126), Expect = 1e-20 Identities = 368/569 (65%), Gaps = 18/569 (3%) Strand=Plus/Minus Query 19232 AAGACATGCAAATTGGAGGATTGAGTAAAGAGTTTTCTGAAATCTTTCGTAGAGCATTTG 19291 |||| ||| ||||||||| || || ||||| || | || || | ||||| |||| Sbjct 1014559 AAGATATGGGAATTGGAGGTTTAGATACTGAGTTCACTCAGATTTTCAGAAGAGCCTTTG 1014500 Query 19292 TGTCGCGTGTTTTTTCTGCAGATGTCATTAAACAATTGGGATGTAAACATGTTCGTGGAC 19351 ||| | | || | |||| | ||| || |||| || || |||||| || Sbjct 1014499 CCTCGAGAATCTTCCCCCCAGAATTGATTGAAAAATTAGGTATTAGTCATGTTAAAGG-- 1014442 Query 19352 TTTTGCTTT---ATGGGCCACCGGGTTGTGGAAAAACATTAATTGCGAGAGAACTTAGTA 19408 | |||||| |||| || || ||| ||| || || || ||||| | || || | | Sbjct 1014441 -TATGCTTTTATATGGACCTCCAGGTACTGGTAAGACGTTGATTGCACGTCAAATTGGAA 1014383 Query 19409 AATTACTTA---CAAAACAACCTCCCAAAATTGTAAATGGTCCTGAAATCTTAAATAAAT 19465 | | | | | || |||| || ||||| ||||| |||||||| || | ||||| Sbjct 1014382 AGATGTTGAATGCTAATGAACCA---AAGATTGTTAATGGACCTGAAATTTTGAGTAAAT 1014326 Query 19466 ATGTAGGTCAATCGGAAGAAAATGTACGACGTTTGTTTGCTGACGCTGAAGAAGAACAAA 19525 | || ||| ||||| || ||| | || | || || || || || | ||| | | Sbjct 1014325 ACGTTGGTTCTTCGGAGGAGAATATCAGAAAGCTTTTCGCCGATGCCGAGGCCGAATATA 1014266 Query 19526 AACGTTTAGGGCGCAAAAGTTCTTTGCACATTATAATACTAGATGAATTGGACGCAATCT 19585 | ||| || ||||||||| || || || | ||||| |||||| | | | Sbjct 1014265 AGAAAAAAGGTGATGAATCTTCTTTGCATATCATTATTTTCGATGAGTTGGACTCGGTTT 1014206 Query 19586 GTAAGCAAAGAGGTTCTGG------TGTAAATGGAGTACATGACACTGTTGTCAATCAAC 19639 || |||||||||||| | || | |||||| ||| | |||||| ||||||| Sbjct 1014205 TCAAACAAAGAGGTTCTAGAGGTGATGGTACTGGAGTGGCTGATAATGTTGTTAATCAAC 1014146 Query 19640 TCCTGTCAAAATTAGACGGTGTTAACCAACTGAATAATATTTTAGTTATTGGCATGACTA 19699 | | ||| | || ||||| | ||||| ||||| |||||||| ||||| ||||||| Sbjct 1014145 TTTTACTGAAAATGGATGGTGTGGATCAACTTAATAACATTTTAGTCATTGGAATGACTA 1014086 Query 19700 ATAGACTGGAATTAATAGACAGCGCCTTATTACGACCCGGTCGGTTGGAAATAAAGATCG 19759 ||||| || || || || || | || || || || || || ||| | | | | Sbjct 1014085 ATAGAAGAGATTTGATCGATGAGGCTCTTTTGCGTCCTGGACGTTTCGAAGTCCAAGTTG 1014026 Query 19760 AAATTAACTTACCCGATGAATGTGGACGT 19788 | ||| | ||||| |||||| ||| ||| Sbjct 1014025 AGATTCATTTACCTGATGAAGCTGGTCGT 1013997 >seq7 Length=809317 Score = 84.2 bits (92), Expect = 2e-11 Identities = 106/146 (73%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 115035 GTCATACGTGAAGGAAAAGCATGCGGATTAATAATCAAGTCTGGCACTAACCCGTCGGCT 115094 |||||||| || |||| ||| ||||| || |||||||| ||||| || | || ||||| Sbjct 676356 GTCATACGAGATGGAATAGCGTGCGGGTTGATAATCAAATCTGGAACCATACCTTCGGCG 676297 Query 115095 GTGAACGGCATGTCGTGCTGATCGTACATCATTCCACAAGTTCCTTTTTGAGCGGTAAAC 115154 ||||| |||| || | | ||| | || ||| ||| ||||||||| || | Sbjct 676296 GTGAAAAGCATATCTTCATTTCTGTAAGTAATACCAATAGTACCTTTTTGACCGTGACGA 676237 Query 115155 GATGCAAATTTATCACCAATCTCAGG 115180 || ||||| ||||||||||| | ||| Sbjct 676236 GAAGCAAACTTATCACCAATTTGAGG 676211 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397455946716055