Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Nakazawaea_20peltata_20[genbank_20GCA_5F001599355.1_202016-03-01]
11 sequences; 11,653,826 total letters
Query= NC_027923.1
Length=132831
Score E
Sequences producing significant alignments: (Bits) Value
seq8 96.9 3e-15
seq5 86.0 5e-12
>seq8
Length=648860
Score = 96.9 bits (106), Expect = 3e-15
Identities = 216/318 (68%), Gaps = 11/318 (3%)
Strand=Plus/Plus
Query 131648 ACTCGCTTCATAAACAAATCCGGCACCCATAACGCGTACAACAGATCTCTAGCTTTTTTC 131707
|||| |||||||| ||||| |||||||| ||| |||| ||| |||||| | |
Sbjct 32387 ACTCTTTTCATAAATAAATCAGGCACCCACAACAGAGGGAACAAATCCCTAGCTCTAATT 32446
Query 131708 TCTTCTGTACCCATAAtttttttCAAATTTAAA--AAGTCCAAAATGTCCGCATGCCAGG 131765
|| ||| | ||||| |||||| | || || || || ||||| || |||||| |
Sbjct 32447 TCCTCTTT-CCCATGATTTTTA-CGGATCCCAATGAAATCAAAAATATCATTATGCCATG 32504
Query 131766 GTTCCAAATACACTGCCATTGCGCCTTTGCGCTTA---CCGCCTTGATTAACATGAC--G 131820
||||||||||||| || || || || | |||| || ||||||| |||| | |
Sbjct 32505 GTTCCAAATACACGGCGATAGCACCAGGTCTCTTATTACCTCCTTGATCTACATATCTGG 32564
Query 131821 AACCATGTTGTTGTATACGCGCAACATGGGCTCCAAACCGTTGGCGTTTCCATTGGTGCT 131880
| ||| ||||| | || | |||||| || | || || | | | ||||| || |
Sbjct 32565 CAGCAT--TGTTGAACACTCTCAACATCGGGATAATCCCATTAGAGGTCCCATTAGTACC 32622
Query 131881 CTTAATGTAGCTGCCATTGGCTCTGATTTTGTGAACGTTGAGTCCAATACCTCCGCCGTA 131940
||| | || ||| | | |||||| ||||||| | | |||||||||||| | |
Sbjct 32623 AGAGATGAAACTCCCAGTCGATCTGATATTGTGAATATGCATTCCAATACCTCCTGCATT 32682
Query 131941 TTTAGAGATTAGTGCGCA 131958
||||||||| | |||||
Sbjct 32683 TTTAGAGATCATCGCGCA 32700
>seq5
Length=1057341
Score = 86.0 bits (94), Expect = 5e-12
Identities = 158/229 (69%), Gaps = 2/229 (1%)
Strand=Plus/Plus
Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTC-GCT 27079
|| || | ||| | ||| || || ||||| || || || ||||| || |||||||| | |
Sbjct 899031 CCACCTCTCAATCTCAAAACTAAGTGTAAAGTGGATTCCTTTTGGATGTTGTAGTCAGAT 899090
Query 27080 CATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGG 27139
| ||| | | ||||| | || ||||| || | || | | ||||| || || ||
Sbjct 899091 AAAGTTCTAC-CATCTTCCAATTGCTTACCAGCAAAGATTAATCTTTGTTGGTCAGGTGG 899149
Query 27140 CACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAAC 27199
| ||||||||| || || ||| || | | || | |||||| | | ||||||
Sbjct 899150 AATACCCTCTTTGTCTTGAATTTTGGACTTAACATTGTCAATAGTGTCAGAAGATTCAAC 899209
Query 27200 TTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATA 27248
||| | ||| |||| || || |||| ||| || |||||||||||||||
Sbjct 899210 TTCCAAAGTGATAGTCTTACCAGTCAAAGTCTTAACAAAGATTTGCATA 899258
Score = 86.0 bits (94), Expect = 5e-12
Identities = 155/227 (68%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTC 27080
|| || | ||| | ||| ||||| || || || || || ||||| || ||||||||| |
Sbjct 899487 CCACCTCTCAATCTCAAAACCAAGTGCAAGGTGGATTCCTTTTGGATGTTGTAGTCGGAC 899546
Query 27081 ATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGC 27140
| | | | ||||| | || ||||| || | || | | ||||| || || ||
Sbjct 899547 AAAGTTCTACCATCTTCCAATTGCTTACCAGCAAAGATTAATCTTTGTTGGTCAGGTGGA 899606
Query 27141 ACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACT 27200
| ||| || ||||| ||||||| || | | | || | ||||| | || ||||||
Sbjct 899607 ATACCTTCCTTATCTTGGATCTTGGACTTGACGTTGTCAATGGTGTCAGAGGATTCAACC 899666
Query 27201 TCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247
|| || || |||| || || || ||||| || || |||||||||||
Sbjct 899667 TCAAGGGTAATAGTCTTACCAGTAAGAGTCTTAACGAAGATTTGCAT 899713
Score = 82.4 bits (90), Expect = 6e-11
Identities = 161/237 (68%), Gaps = 1/237 (0%)
Strand=Plus/Plus
Query 27013 AATTATTG-CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTG 27071
|||||||| ||||| | || | ||| || || || | ||||| || |||||||| |||
Sbjct 898794 AATTATTGACCTCCTCTTAATCTCAAGACTAAGTGAAGAGTAGATTCCTTTTGAATGTTG 898853
Query 27072 TAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGA 27131
|| || || | | | ||||| | || ||||| ||| |||| | | |||||
Sbjct 898854 TAATCAGACAAAGTTCTACCATCTTCCAATTGCTTACCAGCGAAAATCAATCTTTGTTGG 898913
Query 27132 TCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTG 27191
|| || || | ||||||||| || || || || | | || | ||||| | |
Sbjct 898914 TCAGGTGGAATACCCTCTTTGTCTTGAATTTTAGACTTGACATTGTCAATGGTGTCGGAG 898973
Query 27192 GCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATA 27248
| ||||||||| | ||| |||| || || || | ||||| || ||||||||||||
Sbjct 898974 GATTCAACTTCCAAAGTGATAGTCTTACCAGTTAAGGTTTTGACGAAGATTTGCATA 899030
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 424934343032232
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |