Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nakazawaea_20peltata_20[genbank_20GCA_5F001599355.1_202016-03-01] 11 sequences; 11,653,826 total letters Query= NC_027923.1 Length=132831 Score E Sequences producing significant alignments: (Bits) Value seq8 96.9 3e-15 seq5 86.0 5e-12 >seq8 Length=648860 Score = 96.9 bits (106), Expect = 3e-15 Identities = 216/318 (68%), Gaps = 11/318 (3%) Strand=Plus/Plus Query 131648 ACTCGCTTCATAAACAAATCCGGCACCCATAACGCGTACAACAGATCTCTAGCTTTTTTC 131707 |||| |||||||| ||||| |||||||| ||| |||| ||| |||||| | | Sbjct 32387 ACTCTTTTCATAAATAAATCAGGCACCCACAACAGAGGGAACAAATCCCTAGCTCTAATT 32446 Query 131708 TCTTCTGTACCCATAAtttttttCAAATTTAAA--AAGTCCAAAATGTCCGCATGCCAGG 131765 || ||| | ||||| |||||| | || || || || ||||| || |||||| | Sbjct 32447 TCCTCTTT-CCCATGATTTTTA-CGGATCCCAATGAAATCAAAAATATCATTATGCCATG 32504 Query 131766 GTTCCAAATACACTGCCATTGCGCCTTTGCGCTTA---CCGCCTTGATTAACATGAC--G 131820 ||||||||||||| || || || || | |||| || ||||||| |||| | | Sbjct 32505 GTTCCAAATACACGGCGATAGCACCAGGTCTCTTATTACCTCCTTGATCTACATATCTGG 32564 Query 131821 AACCATGTTGTTGTATACGCGCAACATGGGCTCCAAACCGTTGGCGTTTCCATTGGTGCT 131880 | ||| ||||| | || | |||||| || | || || | | | ||||| || | Sbjct 32565 CAGCAT--TGTTGAACACTCTCAACATCGGGATAATCCCATTAGAGGTCCCATTAGTACC 32622 Query 131881 CTTAATGTAGCTGCCATTGGCTCTGATTTTGTGAACGTTGAGTCCAATACCTCCGCCGTA 131940 ||| | || ||| | | |||||| ||||||| | | |||||||||||| | | Sbjct 32623 AGAGATGAAACTCCCAGTCGATCTGATATTGTGAATATGCATTCCAATACCTCCTGCATT 32682 Query 131941 TTTAGAGATTAGTGCGCA 131958 ||||||||| | ||||| Sbjct 32683 TTTAGAGATCATCGCGCA 32700 >seq5 Length=1057341 Score = 86.0 bits (94), Expect = 5e-12 Identities = 158/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTC-GCT 27079 || || | ||| | ||| || || ||||| || || || ||||| || |||||||| | | Sbjct 899031 CCACCTCTCAATCTCAAAACTAAGTGTAAAGTGGATTCCTTTTGGATGTTGTAGTCAGAT 899090 Query 27080 CATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGG 27139 | ||| | | ||||| | || ||||| || | || | | ||||| || || || Sbjct 899091 AAAGTTCTAC-CATCTTCCAATTGCTTACCAGCAAAGATTAATCTTTGTTGGTCAGGTGG 899149 Query 27140 CACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAAC 27199 | ||||||||| || || ||| || | | || | |||||| | | |||||| Sbjct 899150 AATACCCTCTTTGTCTTGAATTTTGGACTTAACATTGTCAATAGTGTCAGAAGATTCAAC 899209 Query 27200 TTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATA 27248 ||| | ||| |||| || || |||| ||| || ||||||||||||||| Sbjct 899210 TTCCAAAGTGATAGTCTTACCAGTCAAAGTCTTAACAAAGATTTGCATA 899258 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTC 27080 || || | ||| | ||| ||||| || || || || || ||||| || ||||||||| | Sbjct 899487 CCACCTCTCAATCTCAAAACCAAGTGCAAGGTGGATTCCTTTTGGATGTTGTAGTCGGAC 899546 Query 27081 ATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGC 27140 | | | | ||||| | || ||||| || | || | | ||||| || || || Sbjct 899547 AAAGTTCTACCATCTTCCAATTGCTTACCAGCAAAGATTAATCTTTGTTGGTCAGGTGGA 899606 Query 27141 ACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACT 27200 | ||| || ||||| ||||||| || | | | || | ||||| | || |||||| Sbjct 899607 ATACCTTCCTTATCTTGGATCTTGGACTTGACGTTGTCAATGGTGTCAGAGGATTCAACC 899666 Query 27201 TCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 || || || |||| || || || ||||| || || ||||||||||| Sbjct 899667 TCAAGGGTAATAGTCTTACCAGTAAGAGTCTTAACGAAGATTTGCAT 899713 Score = 82.4 bits (90), Expect = 6e-11 Identities = 161/237 (68%), Gaps = 1/237 (0%) Strand=Plus/Plus Query 27013 AATTATTG-CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTG 27071 |||||||| ||||| | || | ||| || || || | ||||| || |||||||| ||| Sbjct 898794 AATTATTGACCTCCTCTTAATCTCAAGACTAAGTGAAGAGTAGATTCCTTTTGAATGTTG 898853 Query 27072 TAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGA 27131 || || || | | | ||||| | || ||||| ||| |||| | | ||||| Sbjct 898854 TAATCAGACAAAGTTCTACCATCTTCCAATTGCTTACCAGCGAAAATCAATCTTTGTTGG 898913 Query 27132 TCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTG 27191 || || || | ||||||||| || || || || | | || | ||||| | | Sbjct 898914 TCAGGTGGAATACCCTCTTTGTCTTGAATTTTAGACTTGACATTGTCAATGGTGTCGGAG 898973 Query 27192 GCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATA 27248 | ||||||||| | ||| |||| || || || | ||||| || |||||||||||| Sbjct 898974 GATTCAACTTCCAAAGTGATAGTCTTACCAGTTAAGGTTTTGACGAAGATTTGCATA 899030 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424934343032232