Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nakazawaea_20peltata_20[genbank_20GCA_5F001599355.1_202016-03-01] 11 sequences; 11,653,826 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq1 152 6e-32 seq8 82.4 8e-11 >seq1 Length=2934271 Score = 152 bits (168), Expect = 6e-32 Identities = 491/760 (65%), Gaps = 4/760 (1%) Strand=Plus/Minus Query 79057 GATGCCAGGTTGCACACGGCCGTCTCGTCCGGGCTAGAAACCTCGATGATTTCTGTGCAC 79116 || |||| ||| || ||||| || || || ||| |||| |||| || || ||| Sbjct 86079 GAGGCCAAGTTACAAACGGCTGTTTCTTCAGGGTCAGAATATTCGACAATCTCACAACAC 86020 Query 79117 AAATTAGACGACTTGATGGTGCCGATGTTCTTCTGGTTGCTCTTCTCGTTACAGGCGTCC 79176 || ||||| |||||||| | || | |||||| |||||| |||||| |||||| || || Sbjct 86019 AAGTTAGAAGACTTGATAATACCCAAGTTCTTTTGGTTGGTCTTCTTGTTACAAGCATCT 85960 Query 79177 TTGTAGCACATGTACGGCGTCCCGGTCTCAACCTGACTCTTGAGAACGCCGTCCCAGATG 79236 ||||| ||||| | || || ||||||||| ||| || | || | || ||| | Sbjct 85959 TTGTACAACATGAATGGAGTACCGGTCTCAGTTTGAGCCTCCAAAATGGAGTACCACAAT 85900 Query 79237 TCCCGGGCCCGGACAACCTTCTTGTACC--GACCCTGTGCGACGTACGTCCGGTACAACT 79294 | | ||||| |||| || | |||| | || | | |||| || |||||| Sbjct 85899 TTCTGGGCCTTGACAG--TTTGTCTACCACGGCCTTCTTTCTCGTATTTCTCGTACAAAG 85842 Query 79295 CGTTGAAAGCCTCCCCATAGACATCGGGCAGGCCCGGGCACTCGTGCGGGCACATCAGGT 79354 | |||| | || || || || |||| | || || || | || | | || | Sbjct 85841 CAATGAACTCATCACCGTAAACCTCGGCTAAACCTGGAGCTTCATTTGGAGAGAACAAGG 85782 Query 79355 GCCAGTCCTCGTCCTTCTCAACCTTCTCCATGAAGAGGTCCGGGATCCACAGGGCCGTGA 79414 ||| || | || ||| || || | | |||||| | || |||||||| | || | || Sbjct 85781 TCCAATCTTGGTTCTTTTCGACTCTTTGCATGAACAAATCTGGGATCCATAAAGCTGGGA 85722 Query 79415 AGAGGTCGCGGCAACGCATCTCCTCGTCGCCCTGGTTCAGACGCAGCTCGAGAAAGTCCA 79474 | | || | | | || || || | || || ||| | | || | ||||| | Sbjct 85721 ACAAATCTCTGGCTCTAATTTCTTCCTTACCGTGATTCTTTCTGATGTCAATGAAGTCGA 85662 Query 79475 TGATGTCGGCGTGCCACGGCTCCAGATAGATGGCGAACGAACCCTTGCGCTTGCCGCCGC 79534 ||||||||| ||||| ||||| | || | ||| || | ||| | |||| || | Sbjct 85661 AGATGTCGGCATGCCATGGCTCAATGTACAAGGCAAAGGCACCTGGTCTCTTGTTACCAC 85602 Query 79535 CCTGGTTGACGTACCGGGCCGTGTTGTTGAAAACTCGGAGCATGGGCACGATGCCGTCGG 79594 | |||| |||||| || || ||||||||||| |||| | ||| || | || |||| || Sbjct 85601 CTTGGTCGACGTAACGAGCAGTGTTGTTGAAGACTCTAACCATTGGAATAATACCGTTGG 85542 Query 79595 CGACGCCGTTCGTCCCGTTGATTCGTGTACCGCTCGCCCGAATGTTCGAGCAGTGGATTC 79654 ||||| || ||| || | ||| | || | |||||| | || | | Sbjct 85541 AAGTACCGTTAGTACCGGCAATGTAAGAACCAGTGGCTCTAATGTTGTGGATATGCAAAC 85482 Query 79655 CGATGCCCCCGGACCACTTGGAGATGTGCGCGCACTCCTTGAGCGTCTCGTAGATGCCCT 79714 | || || |||| |||||| || || ||||| || | || || || || || | Sbjct 85481 CAATACCACCGGCAGTCTTGGAAATCAAGGCACACTCTTTCAAAGTGTCATAAATACCTT 85422 Query 79715 CGATCGAGTCGTCCTTCATAGCGACCAGGAAGCAGCTCGACATCTGTGGGTTGTTCGTAC 79774 |||| || || |||||||| || || ||||| || ||||| ||||||| |||| Sbjct 85421 CGATAGAATCCTCCTTCATGGCAACAAGGAAACAAGAAGACATTTGTGGGTGTGGAGTAC 85362 Query 79775 CGGCGTTGAAGAGGGTCGGCGTCGCGTGCGTGAAGAACTT 79814 | |||||||| | || || | || || ||||| |||| Sbjct 85361 CAGCGTTGAACAAAGTTGGAGAAGCATGGGTGAAATACTT 85322 Score = 114 bits (126), Expect = 1e-20 Identities = 152/211 (72%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 78190 GTTCGCAAATAGTACATGCCCGTCTTGAGACCCTTCTTCCATCCGTACAGGTGCATACTC 78249 |||| ||| |||||||| || ||||| | |||||||||||| ||||| | ||||||||| Sbjct 86967 GTTCTCAAGTAGTACATACCGGTCTTCAAACCCTTCTTCCAACCGTAGAAGTGCATACTG 86908 Query 78250 GACAGCTTGGCCAGACTCGGGTTCTCCATGAAGATGTTGAGCGACTGGGACTGGTCGATG 78309 | || ||| ||| | | ||| || || || || | || || || || || ||| Sbjct 86907 GTCAACTTACCCATAGTTGGGGCCTTGATATGAATATTCAAAGATTGAGATTGATCAATG 86848 Query 78310 TACGCACCGCGGTCGGCCGCCATGTCGATGACCGACTTTTGCGGAATCTCCCAGATGGTC 78369 || ||||| |||||||| |||||||| |||| | |||||| | | ||||| | |||| Sbjct 86847 TAGGCACCACGGTCGGCAGCCATGTCAATGATGGTCTTTTGAGACAATTCCCAAACGGTC 86788 Query 78370 CGGTAAATGGCCTTCAGCTCTTCCTGGATGT 78400 ||| || ||||| || || |||||| Sbjct 86787 TTGTAGATTTTCTTCAATTCATCTGGGATGT 86757 >seq8 Length=648860 Score = 82.4 bits (90), Expect = 8e-11 Identities = 84/110 (76%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 78199 TAGTACATGCCCGTCTTGAGACCCTTCTTCCATCCGTACAGGTGCATACTCGACAGCTTG 78258 || ||||| || ||||| | |||||||||||||| || | |||||||||| || |||| Sbjct 31190 TAATACATTCCTGTCTTCAATCCCTTCTTCCATCCATAAAAATGCATACTCGTCAACTTG 31249 Query 78259 GCCAGACTCGGGTTCTCCATGAAGATGTTGAGCGACTGGGACTGGTCGAT 78308 | || | || | | ||| |||||||||| ||||| || |||||||| Sbjct 31250 GACAATGTAGGATCTTTCATATAGATGTTGAGAGACTGTGATTGGTCGAT 31299 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548524724577840