Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nakazawaea_20peltata_20[genbank_20GCA_5F001599355.1_202016-03-01] 11 sequences; 11,653,826 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq1 134 2e-26 seq8 111 2e-19 seq4 98.7 1e-15 >seq1 Length=2934271 Score = 134 bits (148), Expect = 2e-26 Identities = 311/465 (67%), Gaps = 3/465 (1%) Strand=Plus/Plus Query 53267 AAGTACTTTACGCACGCCACGCCAACCCTGTTCAACGCTGGTACGAATCACCCTCAGATG 53326 ||||| || || || || | ||||| |||||||||||||||| ||||| || ||| Sbjct 85322 AAGTATTTCACCCATGCTTCTCCAACTTTGTTCAACGCTGGTACTCCACACCCACAAATG 85381 Query 53327 TCGAGCTGCTTCCTGGTGGCGATGAAGGATGACTCGATCGACGGCATCTACGAGACGCTC 53386 || || ||||| || || |||||||| || || ||||| || || || || || | Sbjct 85382 TCTTCTTGTTTCCTTGTTGCCATGAAGGAGGATTCTATCGAAGGTATTTATGACACTTTG 85441 Query 53387 AAGGAGTGTGCCCACATCTCCAAGTGGTCGGGTGGTATCGGTATCCACTGCTCGAACGTC 53446 || ||||||||| || |||||| | |||||||| ||| | || | ||| | Sbjct 85442 AAAGAGTGTGCCTTGATTTCCAAGACTGCCGGTGGTATTGGTTTGCATATCCACAACATT 85501 Query 53447 CGTGCGAACGGCACACCAATCAAGGGGACGAACGGCGTCGCCGATGGAATCGTGCCTATG 53506 | || | || | || || || ||||| || | || || | || ||| Sbjct 85502 AGAGCCACTGGTTCTTACATTGCCGGTACTAACGGTACTTCCAACGGTATTATTCCAATG 85561 Query 53507 CTCCGCGTCTTCAACAACACGGCCCGGTACGTCAACCAGGGTGGTGGGAAGCG-CAAGGG 53565 | | |||||||||||||| || || |||||| |||| |||||| ||| | | ||| Sbjct 85562 GTTAGAGTCTTCAACAACACTGCTCGTTACGTCGACCAAGGTGGTAACAAGAGACCAGGT 85621 Query 53566 GTCGTTCGCCATCTACCTCGAGCCGTGGCACGCCGACATTATGGAGTTTCTCGAGCTGCG 53625 | | || ||| | ||| | ||||| ||||| |||||||| | || || | || | | Sbjct 85622 G-CCTTTGCCTTGTACATTGAGCCATGGCATGCCGACATCTTCGACTTCATTGACATCAG 85680 Query 53626 TCTGAATCAGGGTGACGAAGAGATGCGCTGCCGTGACCTGTTTACAGCTCTGTGGATTCC 53685 |||||| ||| | ||||| || | | | || |||| ||||| | ||||| || Sbjct 85681 AAAGAATCACGGTAAGGAAGAAATTAGAGCCAGAGATTTGTTCCCAGCTTTATGGATCCC 85740 Query 53686 GGACCTCTTCATGCAAAAGGTGGAGAAGGACGAGGAGTGGTACCT 53730 || | |||||||||| || || ||| || | || ||| |||| Sbjct 85741 AGATTTGTTCATGCAAAGAGTCGAAAAGAACCAAGATTGG-ACCT 85784 Score = 91.5 bits (100), Expect = 2e-13 Identities = 131/185 (71%), Gaps = 0/185 (0%) Strand=Plus/Plus Query 55730 AAGGAGATTTACCGGACGGTGTGGGAGATTCCACAGAAGAGTCTGATTGACATGAGTGCT 55789 ||| | || ||| ||| || ||||| | | || |||| | ||||||||| ||| Sbjct 86774 AAGAAAATCTACAAGACCGTTTGGGAATTGTCTCAAAAGACCATCATTGACATGGCTGCC 86833 Query 55790 GATCGTGGTGCGTACATCGACCAGTCCCAGTCTCTGAACATCTTCATGGAGAATCCTTCA 55849 || |||||||| ||||| || || || || ||| |||| || || || || | Sbjct 86834 GACCGTGGTGCCTACATTGATCAATCTCAATCTTTGAATATTCATATCAAGGCCCCAACT 86893 Query 55850 CTGGCCAAGTTGAGCTCGATGCACTTTTACGGGTGGAAGAAGGGACTCAAGACGGGTATG 55909 ||| ||||||| | |||||||| ||||| ||||||||||| | ||||| |||||| Sbjct 86894 ATGGGTAAGTTGACCAGTATGCACTTCTACGGTTGGAAGAAGGGTTTGAAGACCGGTATG 86953 Query 55910 TACTA 55914 ||||| Sbjct 86954 TACTA 86958 >seq8 Length=648860 Score = 111 bits (122), Expect = 2e-19 Identities = 143/195 (73%), Gaps = 2/195 (1%) Strand=Plus/Minus Query 55730 AAGGAGATTTACCGGACGGTGTGGGAGATTCCACAGAAGAGTC-TGATTGACATGAGTGC 55788 |||||| |||| || || ||||| ||||| ||||| ||| || | || ||| ||| Sbjct 31374 AAGGAGCTTTATAAAACAGTTTGGGAAATTCCTCAGAA-AGTAGTGGTAGATATGGCTGC 31316 Query 55789 TGATCGTGGTGCGTACATCGACCAGTCCCAGTCTCTGAACATCTTCATGGAGAATCCTTC 55848 |||| | | | |||||||| || |||||||| ||||||| ||| | ||||| | Sbjct 31315 TGATAGATCCCCATTTATCGACCAATCACAGTCTCTCAACATCTATATGAAAGATCCTAC 31256 Query 55849 ACTGGCCAAGTTGAGCTCGATGCACTTTTACGGGTGGAAGAAGGGACTCAAGACGGGTAT 55908 | || ||||||||| ||||| ||||| || |||||||||||| | ||||| || || Sbjct 31255 ATTGTCCAAGTTGACGAGTATGCATTTTTATGGATGGAAGAAGGGATTGAAGACAGGAAT 31196 Query 55909 GTACTATCTGCGGAC 55923 ||| || || ||||| Sbjct 31195 GTATTACCTTCGGAC 31181 >seq4 Length=1221263 Score = 98.7 bits (108), Expect = 1e-15 Identities = 360/559 (64%), Gaps = 10/559 (2%) Strand=Plus/Plus Query 74769 CCTTCATCTCTGCTTATCAATTCATTCGAAAACGAAAGGCCAGGCATAAGTCCACGCTTC 74828 ||||||||||| || ||||| || || || || | | || ||||| | || | |||| Sbjct 1137215 CCTTCATCTCTACTGATCAACTCGTTAGAGAAGGTCAAACCTGGCATTAAACCTCTCTTC 1137274 Query 74829 TTCAACCAAAAGATGGCACAGAAGGAACCACTGAAGAAGATGCCTTCGACACACGCAAAG 74888 |||||||| ||||| | | |||||||||||||||||||| ||||| || |||||| Sbjct 1137275 TTCAACCAGAAGATAGAAGCAAAGGAACCACTGAAGAAGATACCTTCAACGGCAGCAAAG 1137334 Query 74889 GCGACAAGGCGTTGCGCGAACGGTGCATC---GGAAGTCATCCAAGTCTGAGCCCATTCA 74945 || || | | | ||||| || || | | | ||||| || |||||| || Sbjct 1137335 GCAACCAATCTCTCACCGAACAAAGCGTCCTTGTCATTGATCCATCTCAAAGCCCAGTCG 1137394 Query 74946 GCTTTTCGTTTGACCGCAGGGACAGTATCGATCGCTTGGAAGAGG--CTTGCCTTCTCTT 75003 || || |||| || | ||| ||||| || | ||| | | | |||| ||| Sbjct 1137395 GCCTTCTCCTTGATACATGGAATAGTCTCGATGGCATTGAACAAGAAGTCAGCTTC-CTT 1137453 Query 75004 CGGGATCCTTGACGAGCTTGTCAATCATAAGTGAGTACGTCTCCGAATGAATCGACTCGT 75063 |||||||||| | ||||||||| | ||||| ||||| || || || ||| Sbjct 1137454 -TGGATCCTTGATGTAGGTGTCAATCAACAAAGAGTAAGTCTCAGAGTGGATGTTCTCCA 1137512 Query 75064 TGAACGACTGGTACGCGTAGAAAGACCGCGCCTCTGCAATCTGTACATCCTTTGAAAAAT 75123 | | ||| | |||||||| || | || | || || || || || || | Sbjct 1137513 TCATAATTTGGAAACCGTAGAAACACTTCAGTTCAGGAAGTTGAACCTCGGCAGAGAAGT 1137572 Query 75124 TCATGTCGATATTCTCCATGACGATGCCGTCCGAGGCGGCGAAAAAAGCCAGTACCATTT 75183 || | | ||||| |||| || ||||| ||||||||||| || |||| || | Sbjct 1137573 TCTCAACCAAGTTCTCGTTGACAATACCGTCAGAGGCGGCGAAGAAGGCCAAAACTCTGG 1137632 Query 75184 TGATAAAGTGGCGCTCATCGTCAGTGAGTTTG---TCCCAATCCTTCAGGTCCCCCGCCA 75240 ||| || | | ||| | ||| | | ||| | ||| || | | ||| | Sbjct 1137633 AGATGAAATATCTCTCGTTGTCGTTCAACTTGGTCTTCCAGTCAATGATATCCTTACTTA 1137692 Query 75241 AATCAATCTCCTCGACCGTCCAGAAACTCCCAATCGCCTTTTTGTACAAAGACCACAAGT 75300 | |||||||||||| | ||||||||| | ||||| ||||||| ||| | | Sbjct 1137693 AGTCAATCTCCTCGGCGGTCCAGAAAGAAGCCTCGGCCTTCTTGTACATTTGCCAGATTT 1137752 Query 75301 CAGGGTAATTGATTGGAAA 75319 | |||| |||||||| || Sbjct 1137753 CGTGGTACTTGATTGGGAA 1137771 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547215924757800