Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Nakazawaea_20peltata_20[genbank_20GCA_5F001599355.1_202016-03-01]
11 sequences; 11,653,826 total letters
Query= NC_028110.1
Length=171045
Score E
Sequences producing significant alignments: (Bits) Value
seq1 134 2e-26
seq8 111 2e-19
seq4 98.7 1e-15
>seq1
Length=2934271
Score = 134 bits (148), Expect = 2e-26
Identities = 311/465 (67%), Gaps = 3/465 (1%)
Strand=Plus/Plus
Query 53267 AAGTACTTTACGCACGCCACGCCAACCCTGTTCAACGCTGGTACGAATCACCCTCAGATG 53326
||||| || || || || | ||||| |||||||||||||||| ||||| || |||
Sbjct 85322 AAGTATTTCACCCATGCTTCTCCAACTTTGTTCAACGCTGGTACTCCACACCCACAAATG 85381
Query 53327 TCGAGCTGCTTCCTGGTGGCGATGAAGGATGACTCGATCGACGGCATCTACGAGACGCTC 53386
|| || ||||| || || |||||||| || || ||||| || || || || || |
Sbjct 85382 TCTTCTTGTTTCCTTGTTGCCATGAAGGAGGATTCTATCGAAGGTATTTATGACACTTTG 85441
Query 53387 AAGGAGTGTGCCCACATCTCCAAGTGGTCGGGTGGTATCGGTATCCACTGCTCGAACGTC 53446
|| ||||||||| || |||||| | |||||||| ||| | || | ||| |
Sbjct 85442 AAAGAGTGTGCCTTGATTTCCAAGACTGCCGGTGGTATTGGTTTGCATATCCACAACATT 85501
Query 53447 CGTGCGAACGGCACACCAATCAAGGGGACGAACGGCGTCGCCGATGGAATCGTGCCTATG 53506
| || | || | || || || ||||| || | || || | || |||
Sbjct 85502 AGAGCCACTGGTTCTTACATTGCCGGTACTAACGGTACTTCCAACGGTATTATTCCAATG 85561
Query 53507 CTCCGCGTCTTCAACAACACGGCCCGGTACGTCAACCAGGGTGGTGGGAAGCG-CAAGGG 53565
| | |||||||||||||| || || |||||| |||| |||||| ||| | | |||
Sbjct 85562 GTTAGAGTCTTCAACAACACTGCTCGTTACGTCGACCAAGGTGGTAACAAGAGACCAGGT 85621
Query 53566 GTCGTTCGCCATCTACCTCGAGCCGTGGCACGCCGACATTATGGAGTTTCTCGAGCTGCG 53625
| | || ||| | ||| | ||||| ||||| |||||||| | || || | || | |
Sbjct 85622 G-CCTTTGCCTTGTACATTGAGCCATGGCATGCCGACATCTTCGACTTCATTGACATCAG 85680
Query 53626 TCTGAATCAGGGTGACGAAGAGATGCGCTGCCGTGACCTGTTTACAGCTCTGTGGATTCC 53685
|||||| ||| | ||||| || | | | || |||| ||||| | ||||| ||
Sbjct 85681 AAAGAATCACGGTAAGGAAGAAATTAGAGCCAGAGATTTGTTCCCAGCTTTATGGATCCC 85740
Query 53686 GGACCTCTTCATGCAAAAGGTGGAGAAGGACGAGGAGTGGTACCT 53730
|| | |||||||||| || || ||| || | || ||| ||||
Sbjct 85741 AGATTTGTTCATGCAAAGAGTCGAAAAGAACCAAGATTGG-ACCT 85784
Score = 91.5 bits (100), Expect = 2e-13
Identities = 131/185 (71%), Gaps = 0/185 (0%)
Strand=Plus/Plus
Query 55730 AAGGAGATTTACCGGACGGTGTGGGAGATTCCACAGAAGAGTCTGATTGACATGAGTGCT 55789
||| | || ||| ||| || ||||| | | || |||| | ||||||||| |||
Sbjct 86774 AAGAAAATCTACAAGACCGTTTGGGAATTGTCTCAAAAGACCATCATTGACATGGCTGCC 86833
Query 55790 GATCGTGGTGCGTACATCGACCAGTCCCAGTCTCTGAACATCTTCATGGAGAATCCTTCA 55849
|| |||||||| ||||| || || || || ||| |||| || || || || |
Sbjct 86834 GACCGTGGTGCCTACATTGATCAATCTCAATCTTTGAATATTCATATCAAGGCCCCAACT 86893
Query 55850 CTGGCCAAGTTGAGCTCGATGCACTTTTACGGGTGGAAGAAGGGACTCAAGACGGGTATG 55909
||| ||||||| | |||||||| ||||| ||||||||||| | ||||| ||||||
Sbjct 86894 ATGGGTAAGTTGACCAGTATGCACTTCTACGGTTGGAAGAAGGGTTTGAAGACCGGTATG 86953
Query 55910 TACTA 55914
|||||
Sbjct 86954 TACTA 86958
>seq8
Length=648860
Score = 111 bits (122), Expect = 2e-19
Identities = 143/195 (73%), Gaps = 2/195 (1%)
Strand=Plus/Minus
Query 55730 AAGGAGATTTACCGGACGGTGTGGGAGATTCCACAGAAGAGTC-TGATTGACATGAGTGC 55788
|||||| |||| || || ||||| ||||| ||||| ||| || | || ||| |||
Sbjct 31374 AAGGAGCTTTATAAAACAGTTTGGGAAATTCCTCAGAA-AGTAGTGGTAGATATGGCTGC 31316
Query 55789 TGATCGTGGTGCGTACATCGACCAGTCCCAGTCTCTGAACATCTTCATGGAGAATCCTTC 55848
|||| | | | |||||||| || |||||||| ||||||| ||| | ||||| |
Sbjct 31315 TGATAGATCCCCATTTATCGACCAATCACAGTCTCTCAACATCTATATGAAAGATCCTAC 31256
Query 55849 ACTGGCCAAGTTGAGCTCGATGCACTTTTACGGGTGGAAGAAGGGACTCAAGACGGGTAT 55908
| || ||||||||| ||||| ||||| || |||||||||||| | ||||| || ||
Sbjct 31255 ATTGTCCAAGTTGACGAGTATGCATTTTTATGGATGGAAGAAGGGATTGAAGACAGGAAT 31196
Query 55909 GTACTATCTGCGGAC 55923
||| || || |||||
Sbjct 31195 GTATTACCTTCGGAC 31181
>seq4
Length=1221263
Score = 98.7 bits (108), Expect = 1e-15
Identities = 360/559 (64%), Gaps = 10/559 (2%)
Strand=Plus/Plus
Query 74769 CCTTCATCTCTGCTTATCAATTCATTCGAAAACGAAAGGCCAGGCATAAGTCCACGCTTC 74828
||||||||||| || ||||| || || || || | | || ||||| | || | ||||
Sbjct 1137215 CCTTCATCTCTACTGATCAACTCGTTAGAGAAGGTCAAACCTGGCATTAAACCTCTCTTC 1137274
Query 74829 TTCAACCAAAAGATGGCACAGAAGGAACCACTGAAGAAGATGCCTTCGACACACGCAAAG 74888
|||||||| ||||| | | |||||||||||||||||||| ||||| || ||||||
Sbjct 1137275 TTCAACCAGAAGATAGAAGCAAAGGAACCACTGAAGAAGATACCTTCAACGGCAGCAAAG 1137334
Query 74889 GCGACAAGGCGTTGCGCGAACGGTGCATC---GGAAGTCATCCAAGTCTGAGCCCATTCA 74945
|| || | | | ||||| || || | | | ||||| || |||||| ||
Sbjct 1137335 GCAACCAATCTCTCACCGAACAAAGCGTCCTTGTCATTGATCCATCTCAAAGCCCAGTCG 1137394
Query 74946 GCTTTTCGTTTGACCGCAGGGACAGTATCGATCGCTTGGAAGAGG--CTTGCCTTCTCTT 75003
|| || |||| || | ||| ||||| || | ||| | | | |||| |||
Sbjct 1137395 GCCTTCTCCTTGATACATGGAATAGTCTCGATGGCATTGAACAAGAAGTCAGCTTC-CTT 1137453
Query 75004 CGGGATCCTTGACGAGCTTGTCAATCATAAGTGAGTACGTCTCCGAATGAATCGACTCGT 75063
|||||||||| | ||||||||| | ||||| ||||| || || || |||
Sbjct 1137454 -TGGATCCTTGATGTAGGTGTCAATCAACAAAGAGTAAGTCTCAGAGTGGATGTTCTCCA 1137512
Query 75064 TGAACGACTGGTACGCGTAGAAAGACCGCGCCTCTGCAATCTGTACATCCTTTGAAAAAT 75123
| | ||| | |||||||| || | || | || || || || || || |
Sbjct 1137513 TCATAATTTGGAAACCGTAGAAACACTTCAGTTCAGGAAGTTGAACCTCGGCAGAGAAGT 1137572
Query 75124 TCATGTCGATATTCTCCATGACGATGCCGTCCGAGGCGGCGAAAAAAGCCAGTACCATTT 75183
|| | | ||||| |||| || ||||| ||||||||||| || |||| || |
Sbjct 1137573 TCTCAACCAAGTTCTCGTTGACAATACCGTCAGAGGCGGCGAAGAAGGCCAAAACTCTGG 1137632
Query 75184 TGATAAAGTGGCGCTCATCGTCAGTGAGTTTG---TCCCAATCCTTCAGGTCCCCCGCCA 75240
||| || | | ||| | ||| | | ||| | ||| || | | ||| |
Sbjct 1137633 AGATGAAATATCTCTCGTTGTCGTTCAACTTGGTCTTCCAGTCAATGATATCCTTACTTA 1137692
Query 75241 AATCAATCTCCTCGACCGTCCAGAAACTCCCAATCGCCTTTTTGTACAAAGACCACAAGT 75300
| |||||||||||| | ||||||||| | ||||| ||||||| ||| | |
Sbjct 1137693 AGTCAATCTCCTCGGCGGTCCAGAAAGAAGCCTCGGCCTTCTTGTACATTTGCCAGATTT 1137752
Query 75301 CAGGGTAATTGATTGGAAA 75319
| |||| |||||||| ||
Sbjct 1137753 CGTGGTACTTGATTGGGAA 1137771
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 547215924757800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |