Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nakazawaea_20peltata_20[genbank_20GCA_5F001599355.1_202016-03-01] 11 sequences; 11,653,826 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq5 158 1e-33 seq8 114 1e-20 seq1 102 9e-17 >seq5 Length=1057341 Score = 158 bits (174), Expect = 1e-33 Identities = 162/212 (76%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 |||||||| || |||||||| | ||||| ||||| ||||| |||||||||||||| Sbjct 899485 ATGCAAATTTTCGTCAAGACTTTGACCGGTAAGACCATTACCCTTGAGGTTGAGTCTTCC 899426 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||||| ||| | ||| |||| ||||| |||||||| || ||||||||||| || Sbjct 899425 GACACCATTGACAATGTTAAGTCTAAGATTCAAGACAAGGAAGGTATTCCTCCAGATCAA 899366 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 || | | |||||||||||||||||| | ||||| | | ||| | | ||||| || Sbjct 899365 CAAAGATTGATTTTTGCTGGTAAGCAATTAGAGGACGGCAGAACCTTGTCTGACTACAAC 899306 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTT 27617 | ||||||||||| || ||||| | ||||| Sbjct 899305 ATTCAAAAGGAATCTACCCTTCACTTGGTCTT 899274 Score = 150 bits (166), Expect = 2e-31 Identities = 161/213 (76%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 |||||||||||||| ||||| | || || |||||||| ||| | || ||||| || | Sbjct 899257 ATGCAAATCTTTGTTAAGACTTTGACTGGTAAGACTATCACTTTGGAAGTTGAATCTTCT 899198 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | |||| ||| | ||| | |||||||| ||||| ||||| ||||| || ||||| Sbjct 899197 GACACTATTGACAATGTTAAGTCCAAAATTCAAGACAAAGAGGGTATTCCACCTGACCAA 899138 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 || | |||| ||||||||||||||| | || |||| | | || || | ||||| || Sbjct 899137 CAAAGATTAATCTTTGCTGGTAAGCAATTGGAAGATGGTAGAACTTTATCTGACTACAAC 899078 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTG 27618 ||||||||||||||||| | || |||| ||| Sbjct 899077 ATCCAAAAGGAATCCACTTTACACTTAGTTTTG 899045 Score = 147 bits (162), Expect = 2e-30 Identities = 155/204 (76%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 27399 TACTATAATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGA 27458 || || |||||||||||| || ||||| ||||| || ||||||||||| ||||||||||| Sbjct 899720 TAATACAATGCAAATCTTCGTTAAGACTCTTACTGGTAAGACTATTACCCTTGAGGTTGA 899661 Query 27459 GTCAGGTGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCC 27518 || ||| | ||||| || | ||| | || || || || ||||| || ||||| || Sbjct 899660 ATCCTCTGACACCATTGACAACGTCAAGTCCAAGATCCAAGATAAGGAAGGTATTCCACC 899601 Query 27519 AGACCAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGA 27578 ||||| || | |||| ||||||||||||||| | || |||| | | || | | || Sbjct 899600 TGACCAACAAAGATTAATCTTTGCTGGTAAGCAATTGGAAGATGGTAGAACTTTGTCCGA 899541 Query 27579 CTATAATGTCCAAAAGGAATCCAC 27602 ||| || |||||||||||||||| Sbjct 899540 CTACAACATCCAAAAGGAATCCAC 899517 Score = 141 bits (156), Expect = 1e-28 Identities = 159/213 (75%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||||||||| ||||| || | || || |||||||| ||| | || ||||| || Sbjct 899029 ATGCAAATCTTCGTCAAAACCTTAACTGGTAAGACTATCACTTTGGAAGTTGAATCCTCC 898970 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||||| ||| | ||| |||||||||| ||||| ||||| ||||| || ||||| Sbjct 898969 GACACCATTGACAATGTCAAGTCTAAAATTCAAGACAAAGAGGGTATTCCACCTGACCAA 898910 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 || | | ||||| |||||||||||| | || |||| | | || | | || || || Sbjct 898909 CAAAGATTGATTTTCGCTGGTAAGCAATTGGAAGATGGTAGAACTTTGTCTGATTACAAC 898850 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTG 27618 | ||||||||||| |||||||| |||||||| Sbjct 898849 ATTCAAAAGGAATCTACTCTTCACTTAGTCTTG 898817 Score = 114 bits (126), Expect = 1e-20 Identities = 144/198 (73%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 |||||||| || || ||||| ||||| || ||||| ||||| | || ||||| || | Sbjct 274226 ATGCAAATTTTCGTTAAGACCCTTACAGGTAAGACCATTACCTTGGAAGTTGAATCTTCT 274285 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | |||| || | ||| | || || || |||||||| || || || || ||||| Sbjct 274286 GACACTATTGACAACGTCAAGTCCAAGATCCAAGACAAGGAAGGTATCCCACCTGACCAA 274345 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 || | | || ||||||||||||||| | ||||| | | ||| | | ||||| || Sbjct 274346 CAAAGATTGATCTTTGCTGGTAAGCAATTAGAGGACGGCAGAACCTTGTCCGACTACAAC 274405 Query 27586 GTCCAAAAGGAATCCACT 27603 ||||||||||||||||| Sbjct 274406 ATCCAAAAGGAATCCACT 274423 >seq8 Length=648860 Score = 114 bits (126), Expect = 1e-20 Identities = 153/213 (72%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 |||||||| || || ||||| | || || ||||| ||||| | || ||||| || | Sbjct 616808 ATGCAAATTTTCGTTAAGACTTTGACAGGTAAGACCATTACCTTGGAAGTTGAATCTTCT 616749 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||||| || | ||| | || || || ||||||||||| || || || ||||| Sbjct 616748 GACACCATTGACAACGTCAAGTCCAAGATCCAAGACAAGGAGGGTATCCCACCTGACCAA 616689 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 || | | || ||||||||||||||| | ||||||| | | || | | ||||| || Sbjct 616688 CAAAGATTGATCTTTGCTGGTAAGCAATTGGAGGATGGTAGAACTTTGTCTGACTACAAC 616629 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTG 27618 |||||||||| ||||| | || | |||||| Sbjct 616628 ATCCAAAAGGAGTCCACCTTGCACTTGGTCTTG 616596 >seq1 Length=2934271 Score = 102 bits (112), Expect = 9e-17 Identities = 506/790 (64%), Gaps = 22/790 (3%) Strand=Plus/Minus Query 80883 CTTC-ACAAATGCCGG-AAGGCTCAGGGACGCCAGATTGCACACGGCCACCTCTTCAGCA 80940 |||| ||||| || || ||||| | || |||| || || ||||| ||||||| Sbjct 86105 CTTCTACAAAGGCAGGTAAGGCA-ATAGAGGCCAAGTTACAAACGGCTGTTTCTTCAGGG 86047 Query 80941 TCTGTAAACTCGACGATTTCCGTGCACAAATTAGAAGACTTAATTGTACCCAGGTTTTTC 81000 || | | | ||||| || || ||||| ||||||||||| || |||||| ||| || Sbjct 86046 TCAGAATATTCGACAATCTCACAACACAAGTTAGAAGACTTGATAATACCCAAGTTCTTT 85987 Query 81001 TGGTTTGACTTGGCGTTGCAAGCGTCCTTGTAGCACATGTACGGGGTACCGGTCTCGACC 81060 ||||| | ||| ||| ||||| || ||||| ||||| | || ||||||||||| Sbjct 85986 TGGTTGGTCTTCTTGTTACAAGCATCTTTGTACAACATGAATGGAGTACCGGTCTCAGTT 85927 Query 81061 TGTGACTTGAGGATGGCGTCCCA-AATCTCGCGCGCCTTGACCACCTTGCGGAATTTG-C 81118 || | || | |||| || ||| ||| || | |||||||| | ||| | | | Sbjct 85926 TGAGCCTCCAAAATGGAGTACCACAATTTCTGG-GCCTTGAC-AGTTTGTCTACCACGGC 85869 Query 81119 CTTCGGCCACATACTTGGCGTAAGCTTCGTCGAACTTGGCACCGTGAAGTTCAGTGAGGT 81178 |||| | | || || |||| | ||||| |||||| || || | | Sbjct 85868 CTTCTTTCTCGTATTTCTCGTACAAAGCAATGAACTCATCACCGTAAACCTCGGCTAAAC 85809 Query 81179 CTGGGCACTCGTTAGGGCACATCAGGTGCCAGTCGGTGTCGTTCTCTACAGCCTTCATGA 81238 |||| || || || | | || | ||| || || || || || | ||||| Sbjct 85808 CTGGAGCTTCATTTGGAGAGAACAAGGTCCAATCTTGGTTCTTTTCGACTCTTTGCATGA 85749 Query 81239 AAGCGTCAGGGATCCAGAGGGCGGTGAACAGGTCGCGGCAGCGCGCCTCCTCATCACCCT 81298 | || |||||||| | || | ||||| || | | | || || | ||| | Sbjct 85748 ACAAATCTGGGATCCATAAAGCTGGGAACAAATCTCTGGCTCTAATTTCTTCCTTACCGT 85689 Query 81299 GGTTGAGGCGCAACTCGAGAAAGTCCATGATGTCCGCATGCCATGGCTCCAGATACACGG 81358 | || | | || | ||||| | |||||| |||||||||||||| | |||| || Sbjct 85688 GATTCTTTCTGATGTCAATGAAGTCGAAGATGTCGGCATGCCATGGCTCAATGTACAAGG 85629 Query 81359 CGATCG-AC-----CCCTTGCGACGGCCACCCTGGTTGACGTAACGGGCAGTCGCGTTAA 81412 | | | || | |||| | ||||| |||| ||||||||| ||||| ||| | Sbjct 85628 CAAAGGCACCTGGTCTCTTGTTA---CCACCTTGGTCGACGTAACGAGCAGTGTTGTTGA 85572 Query 81413 ATACACGCAACATAGGGATGATACCATCTGACTGACCGTTCGTACCCACGATACGCGACC 81472 | || | | ||| || || ||||| | || |||||| ||||| | || || | Sbjct 85571 AGACTCTAACCATTGGAATAATACCGTTGGAAGTACCGTTAGTACCGGCAATGTAAGAAC 85512 Query 81473 CCTTGGCGCGCACCTTGCTGAT-TGAAAGACCGATGCCACCTGACCACTTTGAAATCTGA 81531 | |||| | | ||| ||| || || ||| || ||||| | ||| |||||| Sbjct 85511 CAGTGGCTCTAATGTTGTGGATATGCAA-ACCAATACCACCGGCAGTCTTGGAAATCAAG 85453 Query 81532 GCACACCGGTTCATGGTCTCATAAATTCCCTCGATGCTATCTTTTTTCATGTCAAGCAAG 81591 |||||| |||| || |||||||| || ||||| ||| | |||||| ||| | | Sbjct 85452 GCACACTCTTTCAAAGTGTCATAAATACCTTCGATAGAATCCTCCTTCATGGCAACAAGG 85393 Query 81592 AAACAGCTTGACATCTGAGGGCTTTTTGAG--CCGGCATTGAACAGTGTTGGGGTCGCGT 81649 ||||| ||||| || ||| | | ||| || || ||||||| ||||| | || | Sbjct 85392 AAACAAGAAGACATTTGTGGG--TGTGGAGTACCAGCGTTGAACAAAGTTGGAGAAGCAT 85335 Query 81650 GAATGAAATA 81659 | ||||||| Sbjct 85334 GGGTGAAATA 85325 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570310321582320