Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nakazawaea_20peltata_20[genbank_20GCA_5F001599355.1_202016-03-01] 11 sequences; 11,653,826 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq5 152 1e-31 seq8 129 1e-24 seq3 102 2e-16 >seq5 Length=1057341 Score = 152 bits (168), Expect = 1e-31 Identities = 155/202 (77%), Gaps = 0/202 (0%) Strand=Plus/Plus Query 210918 GTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCCT 210977 ||||| || ||||||||||| || || | | || || |||||||||| ||||| || Sbjct 899517 GTGGATTCCTTTTGGATGTTGTAGTCGGACAAAGTTCTACCATCTTCCAATTGCTTACCA 899576 Query 210978 GCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTC 211037 || ||||| | | |||||||||||| |||| |||||||| || |||||||| || Sbjct 899577 GCAAAGATTAATCTTTGTTGGTCAGGTGGAATACCTTCCTTATCTTGGATCTTGGACTTG 899636 Query 211038 ACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGTC 211097 ||||| || |||||||||||| ||||||||| || || || ||||| || || |||||| Sbjct 899637 ACGTTGTCAATGGTGTCAGAGGATTCAACCTCAAGGGTAATAGTCTTACCAGTAAGAGTC 899696 Query 211098 TTTACAAACACCTGCATTTTAT 211119 || || || | |||||| ||| Sbjct 899697 TTAACGAAGATTTGCATTGTAT 899718 Score = 125 bits (138), Expect = 2e-23 Identities = 150/204 (74%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 210911 GTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTG 210970 ||| | |||||| || ||||||||||| || || | | || || |||||||||| || Sbjct 899054 GTGTAAAGTGGATTCCTTTTGGATGTTGTAGTCAGATAAAGTTCTACCATCTTCCAATTG 899113 Query 210971 CTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTT 211030 ||| || || ||||| | | |||||||||||| |||| || || ||||| || || || Sbjct 899114 CTTACCAGCAAAGATTAATCTTTGTTGGTCAGGTGGAATACCCTCTTTGTCTTGAATTTT 899173 Query 211031 TTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGT 211090 || || || || || |||||||| |||||| || | |||||| ||||| || || Sbjct 899174 GGACTTAACATTGTCAATAGTGTCAGAAGATTCAACTTCCAAAGTGATAGTCTTACCAGT 899233 Query 211091 GAGAGTCTTTACAAACACCTGCAT 211114 | |||||| ||||| | ||||| Sbjct 899234 CAAAGTCTTAACAAAGATTTGCAT 899257 Score = 123 bits (136), Expect = 6e-23 Identities = 157/216 (73%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 210899 TCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCC 210958 ||| | ||| | ||||||||| || || ||||| ||||| ||||| | | || || || Sbjct 898814 TCTCAAGACTAAGTGAAGAGTAGATTCCTTTTGAATGTTGTAATCAGACAAAGTTCTACC 898873 Query 210959 ATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTT 211018 |||||||| ||||| || ||||| || | | |||||||||||| |||| || || || Sbjct 898874 ATCTTCCAATTGCTTACCAGCGAAAATCAATCTTTGTTGGTCAGGTGGAATACCCTCTTT 898933 Query 211019 GTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGAT 211078 ||| || || || || || || || |||||||| ||| |||||| || | |||||| Sbjct 898934 GTCTTGAATTTTAGACTTGACATTGTCAATGGTGTCGGAGGATTCAACTTCCAAAGTGAT 898993 Query 211079 CGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 ||||| || || | || || || || | ||||| Sbjct 898994 AGTCTTACCAGTTAAGGTTTTGACGAAGATTTGCAT 899029 Score = 122 bits (134), Expect = 2e-22 Identities = 151/207 (73%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 210911 GTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTG 210970 ||| | |||||| || ||||||||||| || || | | ||| || || || || | || Sbjct 274429 GTGCAAAGTGGATTCCTTTTGGATGTTGTAGTCGGACAAGGTTCTGCCGTCCTCTAATTG 274370 Query 210971 CTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTT 211030 ||| || || ||||| | | |||||||||||| || | ||||||||||| |||||||| Sbjct 274369 CTTACCAGCAAAGATCAATCTTTGTTGGTCAGGTGGGATACCTTCCTTGTCTTGGATCTT 274310 Query 211031 TTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGT 211090 || ||||| || || |||||||| |||||| || | || || ||||| || || Sbjct 274309 GGACTTGACGTTGTCAATAGTGTCAGAAGATTCAACTTCCAAGGTAATGGTCTTACCTGT 274250 Query 211091 GAGAGTCTTTACAAACACCTGCATTTT 211117 || ||||| || || | ||||| || Sbjct 274249 AAGGGTCTTAACGAAAATTTGCATCTT 274223 Score = 114 bits (126), Expect = 3e-20 Identities = 155/216 (72%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 210899 TCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCC 210958 ||||| ||| | |||||| || || || ||||| ||||| || || | | ||| || || Sbjct 899270 TCTTAAGACCAAGTGAAGGGTAGATTCCTTTTGAATGTTGTAGTCAGACAAGGTTCTGCC 899329 Query 210959 ATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTT 211018 || || | ||||| || || || || | | |||||| || ||||||| |||||||| Sbjct 899330 GTCCTCTAATTGCTTACCAGCAAAAATCAATCTTTGTTGATCTGGAGGAATACCTTCCTT 899389 Query 211019 GTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGAT 211078 ||| || ||||| || || || || |||||||| || |||||||| || || || Sbjct 899390 GTCTTGAATCTTAGACTTAACATTGTCAATGGTGTCGGAAGACTCAACCTCAAGGGTAAT 899449 Query 211079 CGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 ||||| || || | |||||| || || | ||||| Sbjct 899450 GGTCTTACCGGTCAAAGTCTTGACGAAAATTTGCAT 899485 >seq8 Length=648860 Score = 129 bits (142), Expect = 1e-24 Identities = 160/219 (73%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 210899 TCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCC 210958 ||| | ||| | ||| | |||||||| ||||||||||| || || | | || || || Sbjct 616593 TCTCAAGACCAAGTGCAAGGTGGACTCCTTTTGGATGTTGTAGTCAGACAAAGTTCTACC 616652 Query 210959 ATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTT 211018 ||| |||| ||||| || || ||||| | | |||||||||||| || | || ||||| Sbjct 616653 ATCCTCCAATTGCTTACCAGCAAAGATCAATCTTTGTTGGTCAGGTGGGATACCCTCCTT 616712 Query 211019 GTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGAT 211078 ||| |||||||| || ||||| || ||||||||||| |||||| || | || || Sbjct 616713 GTCTTGGATCTTGGACTTGACGTTGTCAATGGTGTCAGAAGATTCAACTTCCAAGGTAAT 616772 Query 211079 CGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCATTTT 211117 ||||| || || | |||||| || || | ||||| || Sbjct 616773 GGTCTTACCTGTCAAAGTCTTAACGAAAATTTGCATCTT 616811 >seq3 Length=1357868 Score = 102 bits (112), Expect = 2e-16 Identities = 132/181 (73%), Gaps = 1/181 (1%) Strand=Plus/Minus Query 139803 TTGCCTT-CCAAAGAAGCACGGAAGAGGAGGACAATCTGCTCTGCGTTTTGAAAGACTTC 139861 ||| ||| |||||||||||||| ||||| || |||||||| | ||||| ||| | Sbjct 471422 TTGACTTACCAAAGAAGCACGGTAGAGGTGGTCAATCTGCCTTACGTTTCTCTAGATTGA 471363 Query 139862 GAAAGGAAAAGAGGCACAACTACTTGAGAAAAGTTGCAGAGAACGCAATACAGTGTTTTA 139921 || | || ||||| || ||||| | ||||| || ||||||| || | || ||||||| Sbjct 471362 GAGACGAGAAGAGACATAACTATGTCAGAAAGGTAGCAGAGACTGCTGTGCAATGTTTTA 471303 Query 139922 TCAAAGACAACAAGTGTTTTGTTTCTGGTATTGTTTTGGCAGGTTCCGCAGAGTTCAAGA 139981 ||| || ||||| ||| ||||| | ||||||| ||||| || || ||||||| Sbjct 471302 TCACTAACGACAAGATCAATGTCACTGGTTTGATTTTGGCTGGTTCTGCCGATTTCAAGA 471243 Query 139982 C 139982 | Sbjct 471242 C 471242 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1159151836632015