Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Nakazawaea_20peltata_20[genbank_20GCA_5F001599355.1_202016-03-01]
11 sequences; 11,653,826 total letters
Query= NC_030230.1
Length=372707
Score E
Sequences producing significant alignments: (Bits) Value
seq5 165 2e-35
seq8 156 1e-32
seq1 91.5 4e-13
>seq5
Length=1057341
Score = 165 bits (182), Expect = 2e-35
Identities = 169/221 (76%), Gaps = 0/221 (0%)
Strand=Plus/Plus
Query 225498 TCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCC 225557
||||| || | ||| | |||||||| ||||||| ||||| |||| ||||||||| ||
Sbjct 899498 TCTCAAAACCAAGTGCAAGGTGGATTCCTTTTGGATGTTGTAGTCGGACAAAGTTCTACC 899557
Query 225558 ATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTT 225617
|||||| | ||||| ||||| ||||| | || ||||||||| || ||||||||||||||
Sbjct 899558 ATCTTCCAATTGCTTACCAGCAAAGATTAATCTTTGTTGGTCAGGTGGAATACCTTCCTT 899617
Query 225618 GTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGAT 225677
||||||||||| ||| || || |||||||| |||| ||| || || | || ||
Sbjct 899618 ATCTTGGATCTTGGACTTGACGTTGTCAATGGTGTCAGAGGATTCAACCTCAAGGGTAAT 899677
Query 225678 CGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCATTTTAT 225718
||||| || || | ||| || | ||| | ||||||| |||
Sbjct 899678 AGTCTTACCAGTAAGAGTCTTAACGAAGATTTGCATTGTAT 899718
Score = 147 bits (162), Expect = 5e-30
Identities = 164/219 (75%), Gaps = 0/219 (0%)
Strand=Plus/Minus
Query 225498 TCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCC 225557
||||| || | ||| | ||||||||| ||||||| ||||| |||| ||| ||||| ||
Sbjct 274441 TCTCAAAACCAAGTGCAAAGTGGATTCCTTTTGGATGTTGTAGTCGGACAAGGTTCTGCC 274382
Query 225558 ATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTT 225617
|| |||| ||||| ||||| ||||| | || ||||||||| || || |||||||||||
Sbjct 274381 GTCCTCTAATTGCTTACCAGCAAAGATCAATCTTTGTTGGTCAGGTGGGATACCTTCCTT 274322
Query 225618 GTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGAT 225677
|||||||||||| ||| || || || ||||| || | ||| || || || || ||
Sbjct 274321 GTCTTGGATCTTGGACTTGACGTTGTCAATAGTGTCAGAAGATTCAACTTCCAAGGTAAT 274262
Query 225678 CGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCATTTT 225716
||||| || || | || || | ||| | |||||| ||
Sbjct 274261 GGTCTTACCTGTAAGGGTCTTAACGAAAATTTGCATCTT 274223
Score = 138 bits (152), Expect = 3e-27
Identities = 160/216 (74%), Gaps = 0/216 (0%)
Strand=Plus/Plus
Query 225498 TCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCC 225557
||| | ||| | ||| || || ||||| ||||| | ||||| || | ||| ||||| ||
Sbjct 899270 TCTTAAGACCAAGTGAAGGGTAGATTCCTTTTGAATGTTGTAGTCAGACAAGGTTCTGCC 899329
Query 225558 ATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTT 225617
|| |||| ||||| ||||| || || | || |||||| || || ||||||||||||||
Sbjct 899330 GTCCTCTAATTGCTTACCAGCAAAAATCAATCTTTGTTGATCTGGAGGAATACCTTCCTT 899389
Query 225618 GTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGAT 225677
|||||| ||||| ||| ||| || |||||||| || | || || || | || ||
Sbjct 899390 GTCTTGAATCTTAGACTTAACATTGTCAATGGTGTCGGAAGACTCAACCTCAAGGGTAAT 899449
Query 225678 CGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713
||||| || |||||||| || | ||| | ||||||
Sbjct 899450 GGTCTTACCGGTCAAAGTCTTGACGAAAATTTGCAT 899485
>seq8
Length=648860
Score = 156 bits (172), Expect = 1e-32
Identities = 166/219 (76%), Gaps = 0/219 (0%)
Strand=Plus/Plus
Query 225498 TCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCC 225557
||||| ||| | ||| | ||||| || ||||||| ||||| || | ||||||||| ||
Sbjct 616593 TCTCAAGACCAAGTGCAAGGTGGACTCCTTTTGGATGTTGTAGTCAGACAAAGTTCTACC 616652
Query 225558 ATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTT 225617
||| || | ||||| ||||| ||||| | || ||||||||| || || ||||| |||||
Sbjct 616653 ATCCTCCAATTGCTTACCAGCAAAGATCAATCTTTGTTGGTCAGGTGGGATACCCTCCTT 616712
Query 225618 GTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGAT 225677
|||||||||||| ||| || || |||||||| || | ||| || || || || ||
Sbjct 616713 GTCTTGGATCTTGGACTTGACGTTGTCAATGGTGTCAGAAGATTCAACTTCCAAGGTAAT 616772
Query 225678 CGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCATTTT 225716
||||| || |||||||| || | ||| | |||||| ||
Sbjct 616773 GGTCTTACCTGTCAAAGTCTTAACGAAAATTTGCATCTT 616811
>seq1
Length=2934271
Score = 91.5 bits (100), Expect = 4e-13
Identities = 85/108 (79%), Gaps = 0/108 (0%)
Strand=Plus/Plus
Query 4470 GAATATTTGACCATCAGTAATAGAGATAACATTTGTAGGGATATAAGCAGAAACATCACC 4529
||| ||||||||||| ||||| || ||||| || || || |||||||| |||||||||||
Sbjct 314634 GAAGATTTGACCATCGGTAATGGAAATAACGTTAGTTGGAATATAAGCGGAAACATCACC 314693
Query 4530 TGCTTGTGTTTCGACAACAGGTAAGGCTGTTAGTGATCCACCACCAAA 4577
|||| || || | ||| || || || || | ||||||||||| ||
Sbjct 314694 ACCTTGGGTCTCAATAACTGGCAAAGCAGTCAAAGATCCACCACCGAA 314741
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1192531031927634
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |