Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nakazawaea_20peltata_20[genbank_20GCA_5F001599355.1_202016-03-01] 11 sequences; 11,653,826 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq1 185 1e-41 seq4 161 1e-34 seq8 140 5e-28 >seq1 Length=2934271 Score = 185 bits (204), Expect = 1e-41 Identities = 334/485 (69%), Gaps = 9/485 (2%) Strand=Plus/Minus Query 76782 GTAAACTGAATTGGAGAAGATGCGGGTTTTGTACGTAGATAGTACATACCAGTTTTTAGA 76841 || || ||||| | || ||| |||| || || | | ||||||||||| || || | | Sbjct 86997 GTGAATTGAATGGCAGCAGAGGCGGCTTGAGTTCTCAAGTAGTACATACCGGTCTTCAAA 86938 Query 76842 CCCAGACTCCATCCGTAGAAATGCATGCTTGTCAGTTTGGA-ATAACTAGGATCGGCT-- 76898 ||| |||| |||||||| ||||| || |||| || ||| | || | || Sbjct 86937 CCCTTCTTCCAACCGTAGAAGTGCATACTGGTCAACTTACCCATAGTTGGG---GCCTTG 86881 Query 76899 ATATGAATATTCATCGACTGACTTTGATCGATGAAAGCTCCTCTATCAGCCGCCATTTTT 76958 ||||||||||||| || ||| |||||| ||| | || || | || || ||||| | Sbjct 86880 ATATGAATATTCAAAGATTGAGATTGATCAATGTAGGCACCACGGTCGGCAGCCATGTCA 86821 Query 76959 ATAATGGTCTTTTGAGGAATTTCCCAAATAGTTTTGAAAACTTGTTTGATATCATCTGGA 77018 || ||||||||||||| | |||||||| || ||| | | || || | |||||||| Sbjct 86820 ATGATGGTCTTTTGAGACAATTCCCAAACGGTCTTGTAGATTTTCTTCAATTCATCTGGG 86761 Query 77019 AGGTTTGTA---TTTTGAATGGAACCACCATCTGATATAATTGTATTCTTTATATCATCA 77075 | ||||| |||||||| || || ||| || || || ||||| || || Sbjct 86760 ATGTTTGGCAAGTTTTGAATAGATCCGTTATCGGAAATGATATGGTTCTTCATGGAGTCG 86701 Query 77076 TTCCACAATTTCCTCTCTGTTAAAACTCTAAGGAGATGAGGATTAACTATTTGAAATTCT 77135 ||||||||| | || ||| |||| | | | || || || ||||| ||||| Sbjct 86700 TTCCACAATCCCAAATCAACCAAATCTCTTAACAAGTATGGGTTGACAATTTGGAATTCA 86641 Query 77136 CCAGACAATACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACAGATTCATTGTTT 77195 || | ||| ||||| | || |||||| ||| || || || || | | |||| |||| Sbjct 86640 CCGGCCAACACTCTTCTAGAGTAAATGTTAGAAGTGTACGGCTCGAAACATTCGTTGTAA 86581 Query 77196 CCCAAAATTTGAGCAGTAGAAGCAGTTGGCATAGGTGCCACCAATAAACTATTTCTGAGA 77255 ||||| ||||||| |||||||||||||||||| || || ||||| ||| ||||| | | Sbjct 86580 CCCAAGATTTGAGAAGTAGAAGCAGTTGGCATTGGAGCAACCAACAAAGAGTTTCTCATA 86521 Query 77256 CCATG 77260 || || Sbjct 86520 CCGTG 86516 Score = 170 bits (188), Expect = 3e-37 Identities = 786/1230 (64%), Gaps = 38/1230 (3%) Strand=Plus/Minus Query 77676 AAAGCTATAGATGCTAGATTACAAACTGCTACCTCATTAGCGTTGGCATATTGTATTATC 77735 || || ||||| || | |||||||| ||| || | || || | ||||| | ||| Sbjct 86088 AAGGCAATAGAGGCCAAGTTACAAACGGCTGTTTCTTCAGGGTCAGAATATTCGACAATC 86029 Query 77736 TCGGTACATAGATTACTACATTTGATAGTGCCCAGATTTTGTTGGTTGCTCTTTTTATTG 77795 || ||| | ||| | | |||||| | |||| || | ||||||| |||| || || Sbjct 86028 TCACAACACAAGTTAGAAGACTTGATAATACCCAAGTTCTTTTGGTTGGTCTTCTTGTTA 85969 Query 77796 CATGAGTCCTTATAAAGAATAAACGGAGTCCCGGTTTCAATCTGTGATTCGATAATAGAT 77855 || | || || || | || || ||||| ||||| ||| | || | || | ||| || Sbjct 85968 CAAGCATCTTTGTACAACATGAATGGAGTACCGGTCTCAGTTTGAGCCTCCAAAATGGAG 85909 Query 77856 TTCCAGACGACTCTAGCTTTTATCATAGATTTGTAT----CGCCTCTCTCTTTCATATTG 77911 | ||| | ||| | || || ||||| | || | ||| | || |||| Sbjct 85908 TACCACAATT-TCTGGGCCTTGACAG---TTTGTCTACCACGGCCTTCTTTCTCGTATTT 85853 Query 77912 A--GTATATAGCCGTTCAAATTCATCTCCCCAAACATCATCCAATCCAGGGCATTCATTT 77969 ||| | ||| | || ||||| || |||| || | || || || ||||||| Sbjct 85852 CTCGTACAAAGCAATG--AACTCATCACCGTAAACCTCGGCTAAACCTGGAGCTTCATTT 85795 Query 77970 GGGCACATCAATGACCAGTCACCATCTTCCTTAACTCGTTTCATAAAGAGATCAGGTATC 78029 || | | ||| | ||| || | | | |||| || ||| || | ||| || ||| Sbjct 85794 GGAGAGAACAAGGTCCAATCTTGGTTCTTTTCGACTCTTTGCATGAACAAATCTGGGATC 85735 Query 78030 CATAGAGCAATAAATAGATCTCGGGTTCTATGTTCTTCATTTCCTGTATTCTTTTTAAGA 78089 |||| ||| || | ||||| || |||| |||||| || || ||||||| | | Sbjct 85734 CATAAAGCTGGGAACAAATCTCTGGCTCTAATTTCTTCCTTACCGTGATTCTTTCTGATG 85675 Query 78090 TCGAGAAACTCCATAATATCAGAATGCCATGGTTCTAGATATATTGCCATAACTCCAGGT 78149 || | || || | || || | ||||||||| || | || | || | | || ||| Sbjct 85674 TCAATGAAGTCGAAGATGTCGGCATGCCATGGCTCAATGTACAAGGCAAAGGCACCTGGT 85615 Query 78150 CGTTTATTACCTCCCTGATCTATATATCTGGCGGTGTTATTATAAACTCTCAACATTGGA 78209 | || ||||| || || || | || | || ||||| || | ||||| | ||||||| Sbjct 85614 CTCTTGTTACCACCTTGGTCGACGTAACGAGCAGTGTTGTTGAAGACTCTAACCATTGGA 85555 Query 78210 ATAATACCGTTAGATGTTCCATTTGTTCCAGAAATATAACTTCCACTTGCGCGAATATTA 78269 ||||||||||| || || || || || || | ||| ||| ||| | || | ||| || Sbjct 85554 ATAATACCGTTGGAAGTACCGTTAGTACCGGCAATGTAAGAACCAGTGGCTCTAATGTT- 85496 Query 78270 CTAATGGATAT----CCCTATTCCTCCTGCCATCTTAGATATTAGAGCGCAACGTTTCAA 78325 ||||||| || || || || || |||| || || | || || |||||| Sbjct 85495 ---GTGGATATGCAAACCAATACCACCGGCAGTCTTGGAAATCAAGGCACACTCTTTCAA 85439 Query 78326 TGTATCGTAGATACCCTCTATACTGTCATCCATCATGTTAAGAAGAAAACAGCTAGACAT 78385 || || || ||||| || ||| || ||| ||||| || ||| ||||| |||||| Sbjct 85438 AGTGTCATAAATACCTTCGATAGAATCCTCCTTCATGGCAACAAGGAAACAAGAAGACAT 85379 Query 78386 TTGATGATGAACAGTTCCTGCATTAAATAATGTCGGAGATGCATGCGTAAACCATTTTTC 78445 ||| | || ||| || || || || || || ||||| ||||| || || | || Sbjct 85378 TTGTGGGTGTGGAGTACCAGCGTTGAACAAAGTTGGAGAAGCATGGGTGAAATACTTCAA 85319 Query 78446 AGAAAGTAGATTGTATGTTTCAATAGCTGATTCTATG-TCCCATTGATGAATTCCTACCG 78504 ||| | | || || || || || | || ||| | || | || | || | | Sbjct 85318 AGACAACATGTTATAAGTCTCGATGACCTTCTCGATGTTATCACCG-TGGACACCAATGG 85260 Query 78505 CTACACGCATCAACATATGCTGAGGTCTTTCAACCGTCTTATTATTTATTTTCAACAAGT 78564 | || | ||| || ||| || |||||||| | ||| | || ||||||| | Sbjct 85259 CGACTCTCATATTCAAATGTTGTGGTCTTTCGGCAACTTTACCGTCGATCCTCAACAAAT 85200 Query 78565 ATGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTA--TGAAAAGTCTCTCTCGTAAAT 78622 | ||| | |||| || || |||||||| ||||| || ||||| || | || |||| Sbjct 85199 AAGATCTCTCCATGGTCTTGAAACCAAAGTAGTTATAGTTGAAA--TCACGGTCATAAAC 85142 Query 78623 AATAACAGAATTTAGTTTATCTTTGTATTTG--GTAACAATATCCATGACAGTAGTT-GA 78679 || |||| |||| | ||| | || | | ||||||| ||| | || || Sbjct 85141 GATGGCAGAGTTTAACTCATC--GGCATGAGCCATGACAATAT-CATAGGTTTCCTTGGA 85085 Query 78680 AATAATAGGAGATCGTACACCATTTTTAGGATTAACATAGTTAAATAAATCTTCCATTAC 78739 | |||||||| ||| |||||| || || || |||||||| ||||| | | || Sbjct 85084 GACCATAGGAGAATGTAAACCATTCTTTGGGTTGACATAGTTGTATAAAGAGGCAACGAC 85025 Query 78740 ATCACTAAATAGtttttttGTTTCCTTGTGTAGATTAGATACAGCTATTCTTGCAGCTAG 78799 |||||| || ||| | |||| || || | ||||| | || ||||| || |||| Sbjct 85024 ATCACTGAAACATTTGGTGGTTTGTTTATGCAAGTTAGAGATGGCGATTCTGGCGGCTAA 84965 Query 78800 AATAGCATAATCAGGATG--TTGT-GTAGTACAAGTGGCTGCTATTTCTGCCGCTAAAAT 78856 || || || || || || ||| || || ||| ||| | | || || || || | Sbjct 84964 GATGGCGTAGTCTGGGTGGACTGTGGTCATATAAGCGGCGG---TCTCGGCGGCCAAGTT 84908 Query 78857 ATCTAACTCTATAGTTGTGACCCCATTATA 78886 ||||||||| || || ||||| || | ||| Sbjct 84907 ATCTAACTCGATGGTGGTGACACCTTCATA 84878 >seq4 Length=1221263 Score = 161 bits (178), Expect = 1e-34 Identities = 400/603 (66%), Gaps = 8/603 (1%) Strand=Plus/Plus Query 48132 AACATTAAACATGCAAAATCACAATGAAGACCTTCATCTCTACTAATTAATTCGTTAGAA 48191 |||| ||||| ||||| || || | ||||||||||||||| || || |||||||| Sbjct 1137185 AACAACAAACAGGCAAAGTCGGTGTGCATACCTTCATCTCTACTGATCAACTCGTTAGAG 1137244 Query 48192 AATGTGAGACCGGGCATTAGTCCACGTTTTTTGAGCCAAAATATTGCCGCGAAAGATCCA 48251 || || | ||| ||||||| || | || || | ||| || || | || || || ||| Sbjct 1137245 AAGGTCAAACCTGGCATTAAACCTCTCTTCTTCAACCAGAAGATAGAAGCAAAGGAACCA 1137304 Query 48252 GAAAAGAATATGCCTTCTACGGCCGCAAATGCGGTAAGTCTCTCTCCGTAACTGGCTTCG 48311 ||||| || ||||| ||||| ||||| || | |||||| ||| | || || Sbjct 1137305 CTGAAGAAGATACCTTCAACGGCAGCAAAGGCAACCAATCTCTCACCGAACAAAGCGTCC 1137364 Query 48312 TTG---TGTATCCACCGTTGTGCCCAATCAGCCTTCTTCTTTACACAAGGCATTGTTTCT 48368 ||| | ||||| | ||||| || ||||||| ||| | ||| || || || || Sbjct 1137365 TTGTCATTGATCCATCTCAAAGCCCAGTCGGCCTTCTCCTTGATACATGGAATAGTCTCG 1137424 Query 48369 ATAGCATTAAAGAGAAAGtttttttCATTGCTATCTTTAACGTAAGTATCTATTAAAAGA 48428 || ||||| || | |||| ||| || ||| || | ||| || || || || | | Sbjct 1137425 ATGGCATTGAACAAGAAGTCAGCTTCCTTTGGATCCTTGATGTAGGTGTCAATCAACAAA 1137484 Query 48429 CTATACATTTCGGAGTGAATATTTTCAATTGCCATCTGAAATCCGTAAAAACATCTCGCT 48488 || | || ||||| || || || || || || || ||||| ||||| || | Sbjct 1137485 GAGTAAGTCTCAGAGTGGATGTTCTCCATCATAATTTGGAAACCGTAGAAACACTTCAGT 1137544 Query 48489 TCTGTGATCTGTACCTCCGTACAAAATCGTTCAGCCAAATTCTCATTTACTATTCCATCA 48548 || | | || ||||| | | | || ||| |||| ||||| || || || || ||| Sbjct 1137545 TCAGGAAGTTGAACCTCGGCAGAGAAGTTCTCAACCAAGTTCTCGTTGACAATACCGTCA 1137604 Query 48549 CTAGCAGCAAAAAATGCTAATACATGTTTA-ATAAAATATTTTTCGTTGGAAGTCAGTT- 48606 || || || || || || || | | | || |||||| | |||||| ||| | Sbjct 1137605 GAGGCGGCGAAGAAGGCCAAAAC-TCTGGAGATGAAATATCTCTCGTTGTCGTTCAACTT 1137663 Query 48607 --TATTCCAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAATGATGC 48664 | ||||||||| ||||||| || || || | || || || ||||| || || || Sbjct 1137664 GGTCTTCCAGTCAATGATATCCTTACTTAAGTCAATCTCCTCGGCGGTCCAGAAAGAAGC 1137723 Query 48665 CTCTGCTTTTTTATACATATTCCATATATCACTGTATTGGATTGGGAAAATAACAAATCT 48724 ||| || || || ||||| | ||| || || ||| | ||||||||| | || ||||| Sbjct 1137724 CTCGGCCTTCTTGTACATTTGCCAGATTTCGTGGTACTTGATTGGGAACAAGACGAATCT 1137783 Query 48725 ATT 48727 || Sbjct 1137784 CTT 1137786 >seq8 Length=648860 Score = 140 bits (154), Expect = 5e-28 Identities = 250/362 (69%), Gaps = 6/362 (2%) Strand=Plus/Plus Query 78003 ACTCGTTTCATAAAGAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTATGT 78062 |||| ||||||||| | |||||| | ||| | | || | ||| | | |||| | Sbjct 32387 ACTCTTTTCATAAATAAATCAGGCACCCACAACAGAGGGAACAAATCCCTAGCTCTAATT 32446 Query 78063 TCTTCATTTCCTGTATTCTTTTTAAG-ATCGAGA--AACTCCATAATATCAGAATGCCAT 78119 || || || || || |||||| | ||| | || || | ||||||| ||||||| Sbjct 32447 TCCTCTTTCCC---ATGATTTTTACGGATCCCAATGAAATCAAAAATATCATTATGCCAT 32503 Query 78120 GGTTCTAGATATATTGCCATAACTCCAGGTCGTTTATTACCTCCCTGATCTATATATCTG 78179 ||||| | ||| | || ||| | ||||||| ||||||||||| ||||||| ||||||| Sbjct 32504 GGTTCCAAATACACGGCGATAGCACCAGGTCTCTTATTACCTCCTTGATCTACATATCTG 32563 Query 78180 GCGGTGTTATTATAAACTCTCAACATTGGAATAATACCGTTAGATGTTCCATTTGTTCCA 78239 || | || || | ||||||||||| || ||||| || ||||| || ||||| || ||| Sbjct 32564 GCAGCATTGTTGAACACTCTCAACATCGGGATAATCCCATTAGAGGTCCCATTAGTACCA 32623 Query 78240 GAAATATAACTTCCACTTGCGCGAATATTACTAATGGATATCCCTATTCCTCCTGCCATC 78299 || || |||| ||| | | | ||||| ||| || || || |||||||| | Sbjct 32624 GAGATGAAACTCCCAGTCGATCTGATATTGTGAATATGCATTCCAATACCTCCTGCATTT 32683 Query 78300 TTAGATATTAGAGCGCAACGTTTCAATGTATCGTAGATACCCTCTATACTGTCATCCATC 78359 ||||| || | ||||| || | ||||| | || ||||| || |||||| || Sbjct 32684 TTAGAGATCATCGCGCACTCCTTGAGCGTATCAAAAATCCCCTCGATGGAATCATCCTTC 32743 Query 78360 AT 78361 || Sbjct 32744 AT 32745 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694668704483040