Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nakazawaea_20peltata_20[genbank_20GCA_5F001599355.1_202016-03-01] 11 sequences; 11,653,826 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq1 179 5e-40 seq8 154 2e-32 seq4 149 9e-31 >seq1 Length=2934271 Score = 179 bits (198), Expect = 5e-40 Identities = 333/485 (69%), Gaps = 9/485 (2%) Strand=Plus/Minus Query 75377 GTGAACTGAATGGGAGAGGATGCTGGTTTTGTACGTAGATAGTACATACCAGTTTTTAGA 75436 ||||| ||||||| || || || | || || | | ||||||||||| || || | | Sbjct 86997 GTGAATTGAATGGCAGCAGAGGCGGCTTGAGTTCTCAAGTAGTACATACCGGTCTTCAAA 86938 Query 75437 CCCAGACTCCATCCGTAGAAATGCATGCTTGTTAGTTTGGA-ATAACTCGGATCGGCT-- 75493 ||| |||| |||||||| ||||| || || | || ||| | || | || Sbjct 86937 CCCTTCTTCCAACCGTAGAAGTGCATACTGGTCAACTTACCCATAGTTGGG---GCCTTG 86881 Query 75494 ATATGAATATTCATCGACTGACTTTGATCGATGAAAGCTCCTCTATCAGCCGCCATTTTT 75553 ||||||||||||| || ||| |||||| ||| | || || | || || ||||| | Sbjct 86880 ATATGAATATTCAAAGATTGAGATTGATCAATGTAGGCACCACGGTCGGCAGCCATGTCA 86821 Query 75554 ATAATGGTCTTTTGAGGAATTTCCCAAATAGTTTTGAAAACTTGTTTGATATCATCTGGA 75613 || ||||||||||||| | |||||||| || ||| | | || || | |||||||| Sbjct 86820 ATGATGGTCTTTTGAGACAATTCCCAAACGGTCTTGTAGATTTTCTTCAATTCATCTGGG 86761 Query 75614 AGATTTG---TATTTTGAATGGATCCGCCATCAGATATAATTGTATTCTTGATCTCATCA 75670 | |||| |||||||| |||||| ||| || || || ||||| || || Sbjct 86760 ATGTTTGGCAAGTTTTGAATAGATCCGTTATCGGAAATGATATGGTTCTTCATGGAGTCG 86701 Query 75671 TTCCACAATTTTCTCTCGGTTAAAACTCTAAGGAGATGAGGATTAACAATTTGAAATTCT 75730 ||||||||| || ||| |||| | | | || || |||||||| ||||| Sbjct 86700 TTCCACAATCCCAAATCAACCAAATCTCTTAACAAGTATGGGTTGACAATTTGGAATTCA 86641 Query 75731 CCAGACAATACTCTTCGAGTGTAAATATTACTGGTATATGGTTCCACAGATTCATTGTTT 75790 || | ||| ||||||| || |||||| ||| || || || || | | |||| |||| Sbjct 86640 CCGGCCAACACTCTTCTAGAGTAAATGTTAGAAGTGTACGGCTCGAAACATTCGTTGTAA 86581 Query 75791 CCCAAAATTTGAGCAGTTGAAGCAGTCGGCATAGGTGCCACCAATAAACTATTTCTGAGA 75850 ||||| ||||||| ||| |||||||| ||||| || || ||||| ||| ||||| | | Sbjct 86580 CCCAAGATTTGAGAAGTAGAAGCAGTTGGCATTGGAGCAACCAACAAAGAGTTTCTCATA 86521 Query 75851 CCATG 75855 || || Sbjct 86520 CCGTG 86516 Score = 168 bits (186), Expect = 1e-36 Identities = 449/683 (66%), Gaps = 6/683 (1%) Strand=Plus/Minus Query 76523 AATTCATCTCCCCAAACATCATCCAAACCAGGACATTCATTCGGACACATCAATGACCAC 76582 || ||||| || |||| || | ||||| ||| |||||| ||| | | ||| | ||| Sbjct 85836 AACTCATCACCGTAAACCTCGGCTAAACCTGGAGCTTCATTTGGAGAGAACAAGGTCCAA 85777 Query 76583 TCACCATCTTCCTTAACCCGTTTCATAAAGAGATCAGGTATCCATAGAGCAATAAATAGA 76642 || | | | || | || ||| || | ||| || ||||||| ||| || | | Sbjct 85776 TCTTGGTTCTTTTCGACTCTTTGCATGAACAAATCTGGGATCCATAAAGCTGGGAACAAA 85717 Query 76643 TCTCGGGTTCTACGTTCTTCATTTCCTGTATTCTTTTTAAGATCTAGGAACTCCATAATA 76702 |||| || |||| |||||| || || ||||||| | | || | ||| || | || Sbjct 85716 TCTCTGGCTCTAATTTCTTCCTTACCGTGATTCTTTCTGATGTCAATGAAGTCGAAGATG 85657 Query 76703 TCAGAATGCCATGGTTCTAGATATATCGCCATAACACCCGGTCGTTTATTACCTCCCTGA 76762 || | ||||||||| || | || | || | |||| |||| || ||||| || || Sbjct 85656 TCGGCATGCCATGGCTCAATGTACAAGGCAAAGGCACCTGGTCTCTTGTTACCACCTTGG 85597 Query 76763 TCTATATATCTGGCAGTGTTATTATAAACTCTCAACATTGGAATAATGCCGTTAGATGTA 76822 || | || | |||||||| || | ||||| | |||||||||||| ||||| || ||| Sbjct 85596 TCGACGTAACGAGCAGTGTTGTTGAAGACTCTAACCATTGGAATAATACCGTTGGAAGTA 85537 Query 76823 CCATTTGTTCCAGAAATATAACTTCCACATGCACGAATATTACTAATAGATAGGCCTATT 76882 || || || || | ||| ||| ||| || | ||| || ||| | || || Sbjct 85536 CCGTTAGTACCGGCAATGTAAGAACCAGTGGCTCTAATGTTGTGGATATGCAAACCAATA 85477 Query 76883 CCTCCTGCCATTTTAGAGATTAGAGCACAGCGTTTCAATGTGTCATAGATGCCCTCTATA 76942 || || || | || || || | ||||| |||||| |||||||| || || || ||| Sbjct 85476 CCACCGGCAGTCTTGGAAATCAAGGCACACTCTTTCAAAGTGTCATAAATACCTTCGATA 85417 Query 76943 CTATCATCCATCATGTTAAGAAGAAAACAGCTAGACATTTGATGATGAACAGTTCCTGCA 77002 ||| ||| ||||| || ||| ||||| ||||||||| | || ||| || || Sbjct 85416 GAATCCTCCTTCATGGCAACAAGGAAACAAGAAGACATTTGTGGGTGTGGAGTACCAGCG 85357 Query 77003 TTAAACAATGTAGGAGATGCATGAGTGAACCATTTTTCAGAAAGTAGATTGTATGTTTCA 77062 || ||||| || ||||| ||||| ||||| | || ||| | | || || || || Sbjct 85356 TTGAACAAAGTTGGAGAAGCATGGGTGAAATACTTCAAAGACAACATGTTATAAGTCTCG 85297 Query 77063 ATAACTGCTTCTATATCCCAT--TGATGAATTCCTACAGCGACACGCATCAACATATGCT 77120 || || ||||| || || || | || | ||||| | ||| || ||| | Sbjct 85296 ATGAC--CTTCTCGATGTTATCACCGTGGACACCAATGGCGACTCTCATATTCAAATGTT 85239 Query 77121 GAGGTCGTTCTACAGTCTTATTATTTATTTTCAACAAGTATGATTTTTCCAAAGTTTTAA 77180 | |||| ||| || ||| | || ||||||| || ||| | |||| || || | Sbjct 85238 GTGGTCTTTCGGCAACTTTACCGTCGATCCTCAACAAATAAGATCTCTCCATGGTCTTGA 85179 Query 77181 AACCAAAATAGTTGTA--TGAAA 77201 ||||||| ||||| || ||||| Sbjct 85178 AACCAAAGTAGTTATAGTTGAAA 85156 >seq8 Length=648860 Score = 154 bits (170), Expect = 2e-32 Identities = 400/601 (67%), Gaps = 23/601 (4%) Strand=Plus/Plus Query 76603 TTTCATAAAGAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTACGTTCTTC 76662 ||||||||| | |||||| | ||| | | || | ||| | | |||| ||| || Sbjct 32392 TTTCATAAATAAATCAGGCACCCACAACAGAGGGAACAAATCCCTAGCTCTAATTTCCTC 32451 Query 76663 ATTTCCTGTATTCTTTTTAAG-ATCT--AGGAACTCCATAATATCAGAATGCCATGGTTC 76719 || || || |||||| | ||| | ||| || | ||||||| |||||||||||| Sbjct 32452 TTTCCC---ATGATTTTTACGGATCCCAATGAAATCAAAAATATCATTATGCCATGGTTC 32508 Query 76720 TAGATATATCGCCATAACACCCGGTCGTTTATTACCTCCCTGATCTATATATCTGGCAGT 76779 | ||| | || ||| |||| |||| ||||||||||| ||||||| ||||||||||| Sbjct 32509 CAAATACACGGCGATAGCACCAGGTCTCTTATTACCTCCTTGATCTACATATCTGGCAGC 32568 Query 76780 GTTATTATAAACTCTCAACATTGGAATAATGCCGTTAGATGTACCATTTGTTCCAGAAAT 76839 || || | ||||||||||| || ||||| || ||||| || ||||| || ||||| || Sbjct 32569 ATTGTTGAACACTCTCAACATCGGGATAATCCCATTAGAGGTCCCATTAGTACCAGAGAT 32628 Query 76840 ATAACTTCCACATGCACGAATATTACTAATAGATAGGCCTATTCCTCCTGCCATTTTAGA 76899 |||| ||| | | ||||| |||| | || || |||||||| ||||||| Sbjct 32629 GAAACTCCCAGTCGATCTGATATTGTGAATATGCATTCCAATACCTCCTGCATTTTTAGA 32688 Query 76900 GATTAGAGCACAGCGTTTCAATGTGTCATAGATGCCCTCTATACTATCATCCATCATGTT 76959 ||| | || || || | || ||| | || ||||| || ||||||| |||| Sbjct 32689 GATCATCGCGCACTCCTTGAGCGTATCAAAAATCCCCTCGATGGAATCATCCTTCATTGC 32748 Query 76960 AAGAAGAAAACAGCTAGACATT---TGATGATGAACAGTTCCTGCATTAAACAATGTAGG 77016 | ||| | ||| |||| | || | | ||| || | ||| || | |||||| Sbjct 32749 CACAAGGA---AGCATGACAGTAACTGGGGTCTCAGAGTACCAGAATTGAAAAGTGTAGG 32805 Query 77017 AGATGCATGAGTGAACCATTTTTCAGAAAGTAGATTGTATGTTTC-AATAACTGCTTCTA 77075 | | |||| ||| | || || | | | ||| ||||| |||| | | || | Sbjct 32806 ACTTCCATGTACGAAGAAACGTTTGGACATCAATTCGTAAGTTTCTAATATCAG-GTCAA 32864 Query 77076 TATCCCATTG---ATGAATTCCTACAGCGACACGCATCAACATATGCTGAGGTCGTTCT- 77131 | || | | ||| ||||||||| || | ||| | | ||||||||||| ||| Sbjct 32865 TGTCTTCTGGGCCATGGATTCCTACACTAACTCTCATTAGTAAATGCTGAGGTCTCTCTG 32924 Query 77132 --ACAGTCTTATTATTTATTTTCAACAAGTATGATTTTTCCAAAGTTTTAAAACCAAAAT 77189 || | | || ||| | ||||| || || |||||||||||||| ||||| |||| Sbjct 32925 CGACGGCC---CCATCTATCCTTAACAAATACGACTTTTCCAAAGTTTTGAAACCGAAAT 32981 Query 77190 A 77190 | Sbjct 32982 A 32982 >seq4 Length=1221263 Score = 149 bits (164), Expect = 9e-31 Identities = 397/603 (66%), Gaps = 8/603 (1%) Strand=Plus/Plus Query 46621 AACATTAAACATGCAAAATCACAATGAAGGCCTTCATCTCTACTAATTAATTCGTTAGAA 46680 |||| ||||| ||||| || || | |||||||||||||| || || |||||||| Sbjct 1137185 AACAACAAACAGGCAAAGTCGGTGTGCATACCTTCATCTCTACTGATCAACTCGTTAGAG 1137244 Query 46681 AATGTGAGCCCAGGCATTAGTCCACGCTTTTTGAGCCAAAATATAGCCGCGAAAGATCCA 46740 || || | || ||||||| || | ||| || | ||| || |||| || || || ||| Sbjct 1137245 AAGGTCAAACCTGGCATTAAACCTCTCTTCTTCAACCAGAAGATAGAAGCAAAGGAACCA 1137304 Query 46741 GAAAAGAATATGCCTTCTACAGCCGCGAATGCGACAAGTCTCTCTCCGTAACTGGCATCA 46800 ||||| || ||||| || || || || || || | |||||| ||| | || || Sbjct 1137305 CTGAAGAAGATACCTTCAACGGCAGCAAAGGCAACCAATCTCTCACCGAACAAAGCGTCC 1137364 Query 46801 TT---ATGAATCCACCTTTGAGCCCAATCAGCCTTTTTCTTTACACAAGGCATTGTTTCT 46857 || || ||||| || |||||| || ||||| | ||| | ||| || || || || Sbjct 1137365 TTGTCATTGATCCATCTCAAAGCCCAGTCGGCCTTCTCCTTGATACATGGAATAGTCTCG 1137424 Query 46858 ATAGCATTAAAGAGAAAGtttttttCATCACTATCTTTAACATATGTATCTATTAAAAGA 46917 || ||||| || | |||| ||| | ||| || | || || || || || | | Sbjct 1137425 ATGGCATTGAACAAGAAGTCAGCTTCCTTTGGATCCTTGATGTAGGTGTCAATCAACAAA 1137484 Query 46918 CTATACATTTCTGAATGAATGTTTTCAATAGCCATCTGAAATCCGTAAAAACATCTTGCT 46977 || | || || || ||||| || || || || || ||||| ||||| | | Sbjct 1137485 GAGTAAGTCTCAGAGTGGATGTTCTCCATCATAATTTGGAAACCGTAGAAACACTTCAGT 1137544 Query 46978 TCAGTAATCTGTACCTCTGTACAAAATCGTTCAGACAAATTCTCATTCACTATTCCATCA 47037 |||| || || ||||| | | | || ||| ||| ||||| || || || || ||| Sbjct 1137545 TCAGGAAGTTGAACCTCGGCAGAGAAGTTCTCAACCAAGTTCTCGTTGACAATACCGTCA 1137604 Query 47038 CTAGCAGCAAAAAATGCCAATACATGTTTA-ATAAAATATTTTTCATCGGTAGTCAGTT- 47095 || || || || ||||| || | | | || |||||| | || | | ||| | Sbjct 1137605 GAGGCGGCGAAGAAGGCCAAAAC-TCTGGAGATGAAATATCTCTCGTTGTCGTTCAACTT 1137663 Query 47096 --TATTCCAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAGAATGACGC 47153 | ||||||||| ||||||| || || || | || || || |||||||| || || Sbjct 1137664 GGTCTTCCAGTCAATGATATCCTTACTTAAGTCAATCTCCTCGGCGGTCCAGAAAGAAGC 1137723 Query 47154 CTCTGCTTTTTTATACATATTCCATATATCACGATATTGGATCGGAAAAATAACAAATCT 47213 ||| || || || ||||| | ||| || || | || | ||| || || | || ||||| Sbjct 1137724 CTCGGCCTTCTTGTACATTTGCCAGATTTCGTGGTACTTGATTGGGAACAAGACGAATCT 1137783 Query 47214 ATT 47216 || Sbjct 1137784 CTT 1137786 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712934301971520