Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nakazawaea_20peltata_20[genbank_20GCA_5F001599355.1_202016-03-01] 11 sequences; 11,653,826 total letters Query= NC_031465.1 Length=360610 Score E Sequences producing significant alignments: (Bits) Value seq5 111 4e-19 seq8 91.5 3e-13 >seq5 Length=1057341 Score = 111 bits (122), Expect = 4e-19 Identities = 145/201 (72%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 151908 GTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAGGCTTTTCCCG 151967 || || || |||||||||||||| |||| |||||||| |||||||| | || || Sbjct 899517 GTGGATTCCTTTTGGATGTTGTAGTCGGACAAAGTTCTACCATCTTCCAATTGCTTACCA 899576 Query 151968 GCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTTTGTTTG 152027 || ||||| | || || ||||| | | || |||||||| ||||| || || ||| Sbjct 899577 GCAAAGATTAATCTTTGTTGGTCAGGTGGAATACCTTCCTTATCTTGGATCTTGGACTTG 899636 Query 152028 ACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTGAGAGTC 152087 || | || | | |||| || || || ||||| |||||||| || || || |||||| Sbjct 899637 ACGTTGTCAATGGTGTCAGAGGATTCAACCTCAAGGGTAATAGTCTTACCAGTAAGAGTC 899696 Query 152088 TTCACGAAGACCTGCATTTTA 152108 || ||||||| |||||| || Sbjct 899697 TTAACGAAGATTTGCATTGTA 899717 Score = 105 bits (116), Expect = 2e-17 Identities = 153/216 (71%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 151889 TCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCC 151948 ||| | ||| | ||||||||||| || ||||| ||||||||||| | |||||||| || Sbjct 898814 TCTCAAGACTAAGTGAAGAGTAGATTCCTTTTGAATGTTGTAATCAGACAAAGTTCTACC 898873 Query 151949 ATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTT 152008 |||||| | || || ||||| || | || || ||||| | | || || || || Sbjct 898874 ATCTTCCAATTGCTTACCAGCGAAAATCAATCTTTGTTGGTCAGGTGGAATACCCTCTTT 898933 Query 152009 TTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAAT 152068 ||||||||||| |||||| | || | | |||| || || ||||| | ||| || Sbjct 898934 GTCTTGAATTTTAGACTTGACATTGTCAATGGTGTCGGAGGATTCAACTTCCAAAGTGAT 898993 Query 152069 AGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 ||| || || || | || || ||||||| ||||| Sbjct 898994 AGTCTTACCAGTTAAGGTTTTGACGAAGATTTGCAT 899029 Score = 96.9 bits (106), Expect = 8e-15 Identities = 140/198 (71%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 151907 AGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAGGCTTTTCCC 151966 ||| || || |||||||||||||| || | ||||||||| |||||||| | || || Sbjct 899060 AGTGGATTCCTTTTGGATGTTGTAGTCAGATAAAGTTCTACCATCTTCCAATTGCTTACC 899119 Query 151967 GGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTTTGTTT 152026 || ||||| | || || ||||| | | || || || || ||||||||||| || Sbjct 899120 AGCAAAGATTAATCTTTGTTGGTCAGGTGGAATACCCTCTTTGTCTTGAATTTTGGACTT 899179 Query 152027 GACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTGAGAGT 152086 ||| | || | |||| ||| || ||||| | ||| ||||| || || || | ||| Sbjct 899180 AACATTGTCAATAGTGTCAGAAGATTCAACTTCCAAAGTGATAGTCTTACCAGTCAAAGT 899239 Query 152087 CTTCACGAAGACCTGCAT 152104 ||| || |||| ||||| Sbjct 899240 CTTAACAAAGATTTGCAT 899257 Score = 89.7 bits (98), Expect = 1e-12 Identities = 147/211 (70%), Gaps = 1/211 (0%) Strand=Plus/Minus Query 151897 CAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTA 151956 |||| || | ||| || || |||||||||||||| |||| || ||||| || || |||| Sbjct 274432 CAAG-TGCAAAGTGGATTCCTTTTGGATGTTGTAGTCGGACAAGGTTCTGCCGTCCTCTA 274374 Query 151957 GGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAA 152016 || || || ||||| | || || ||||| | | ||| |||||||| ||||| | Sbjct 274373 ATTGCTTACCAGCAAAGATCAATCTTTGTTGGTCAGGTGGGATACCTTCCTTGTCTTGGA 274314 Query 152017 TTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGC 152076 | || ||||| | || | |||| ||| || ||||| | ||||| || || | Sbjct 274313 TCTTGGACTTGACGTTGTCAATAGTGTCAGAAGATTCAACTTCCAAGGTAATGGTCTTAC 274254 Query 152077 CCGTGAGAGTCTTCACGAAGACCTGCATTTT 152107 | || || ||||| ||||| | ||||| || Sbjct 274253 CTGTAAGGGTCTTAACGAAAATTTGCATCTT 274223 >seq8 Length=648860 Score = 91.5 bits (100), Expect = 3e-13 Identities = 140/200 (70%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 151908 GTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAGGCTTTTCCCG 151967 || ||||| |||||||||||||| || | |||||||| ||||| || | || || Sbjct 616612 GTGGACTCCTTTTGGATGTTGTAGTCAGACAAAGTTCTACCATCCTCCAATTGCTTACCA 616671 Query 151968 GCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTTTGTTTG 152027 || ||||| | || || ||||| | | ||| || ||||| ||||| || || ||| Sbjct 616672 GCAAAGATCAATCTTTGTTGGTCAGGTGGGATACCCTCCTTGTCTTGGATCTTGGACTTG 616731 Query 152028 ACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTGAGAGTC 152087 || | || | | |||| ||| || ||||| | ||||| || || || || | |||| Sbjct 616732 ACGTTGTCAATGGTGTCAGAAGATTCAACTTCCAAGGTAATGGTCTTACCTGTCAAAGTC 616791 Query 152088 TTCACGAAGACCTGCATTTT 152107 || ||||| | ||||| || Sbjct 616792 TTAACGAAAATTTGCATCTT 616811 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1153820637383381