Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nakazawaea_20peltata_20[genbank_20GCA_5F001599355.1_202016-03-01] 11 sequences; 11,653,826 total letters Query= NC_032001.1 Length=327147 Score E Sequences producing significant alignments: (Bits) Value seq8 178 3e-39 seq5 170 4e-37 seq4 102 2e-16 >seq8 Length=648860 Score = 178 bits (196), Expect = 3e-39 Identities = 170/218 (78%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 282891 ACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCT 282950 |||| || || ||| || ||||||||||||||||||| | || | |||||||| Sbjct 616600 ACCAAGTGCAAGGTGGACTCCTTTTGGATGTTGTAGTCAGACAAAGTTCTACCATCCTCC 616659 Query 282951 AGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGG 283010 | ||| || || ||||||||||| | |||||||||| || |||||||||||||||||| Sbjct 616660 AATTGCTTACCAGCAAAGATCAATCTTTGTTGGTCAGGTGGGATACCCTCCTTGTCTTGG 616719 Query 283011 ATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTA 283070 ||||| | || ||| | || || ||||| |||| ||| ||||| | || || |||||| Sbjct 616720 ATCTTGGACTTGACGTTGTCAATGGTGTCAGAAGATTCAACTTCCAAGGTAATGGTCTTA 616779 Query 283071 CCCGTCAAAGTCTTAACGAATATCTGCATTTTCATATA 283108 || ||||||||||||||||| || ||||| || |||| Sbjct 616780 CCTGTCAAAGTCTTAACGAAAATTTGCATCTTTGTATA 616817 >seq5 Length=1057341 Score = 170 bits (188), Expect = 4e-37 Identities = 167/213 (78%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 282891 ACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAG-CAAGCGTGCGGCCATCCTC 282949 |||| || || ||| ||| ||||||||||||||||| | |||| || | ||| ||||| Sbjct 274434 ACCAAGTGCAAAGTGGATTCCTTTTGGATGTTGTAGTCGGACAAG-GTTCTGCCGTCCTC 274376 Query 282950 TAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTG 283009 || ||| || || ||||||||||| | |||||||||| || ||||| ||||||||||| Sbjct 274375 TAATTGCTTACCAGCAAAGATCAATCTTTGTTGGTCAGGTGGGATACCTTCCTTGTCTTG 274316 Query 283010 GATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTT 283069 |||||| | || ||| | || |||||||| |||| ||| ||||| | || || ||||| Sbjct 274315 GATCTTGGACTTGACGTTGTCAATAGTGTCAGAAGATTCAACTTCCAAGGTAATGGTCTT 274256 Query 283070 ACCCGTCAAAGTCTTAACGAATATCTGCATTTT 283102 ||| || | ||||||||||| || ||||| || Sbjct 274255 ACCTGTAAGGGTCTTAACGAAAATTTGCATCTT 274223 Score = 168 bits (186), Expect = 1e-36 Identities = 159/203 (78%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 282897 TGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGT 282956 ||||| ||| ||| ||||||||||||||||||| | || | ||||| || | ||| Sbjct 899055 TGTAAAGTGGATTCCTTTTGGATGTTGTAGTCAGATAAAGTTCTACCATCTTCCAATTGC 899114 Query 282957 TTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTT 283016 || || |||||||| || | |||||||||| ||||||||||| |||||||| || || Sbjct 899115 TTACCAGCAAAGATTAATCTTTGTTGGTCAGGTGGAATACCCTCTTTGTCTTGAATTTTG 899174 Query 283017 GCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTC 283076 | || || | || |||||||| |||| ||| ||||| | |||||| |||||||| ||| Sbjct 899175 GACTTAACATTGTCAATAGTGTCAGAAGATTCAACTTCCAAAGTGATAGTCTTACCAGTC 899234 Query 283077 AAAGTCTTAACGAATATCTGCAT 283099 ||||||||||| || || ||||| Sbjct 899235 AAAGTCTTAACAAAGATTTGCAT 899257 Score = 149 bits (164), Expect = 1e-30 Identities = 159/210 (76%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 282891 ACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCT 282950 |||| || || ||| ||| ||||||||||||||||| | | || | ||||| || Sbjct 899505 ACCAAGTGCAAGGTGGATTCCTTTTGGATGTTGTAGTCGGACAAAGTTCTACCATCTTCC 899564 Query 282951 AGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGG 283010 | ||| || || |||||||| || | |||||||||| |||||||| ||||| |||||| Sbjct 899565 AATTGCTTACCAGCAAAGATTAATCTTTGTTGGTCAGGTGGAATACCTTCCTTATCTTGG 899624 Query 283011 ATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTA 283070 ||||| | || ||| | || || ||||| || | ||| || || || || || |||||| Sbjct 899625 ATCTTGGACTTGACGTTGTCAATGGTGTCAGAGGATTCAACCTCAAGGGTAATAGTCTTA 899684 Query 283071 CCCGTCAAAGTCTTAACGAATATCTGCATT 283100 || || | |||||||||||| || |||||| Sbjct 899685 CCAGTAAGAGTCTTAACGAAGATTTGCATT 899714 Score = 147 bits (162), Expect = 5e-30 Identities = 150/193 (78%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 282908 TTCTTTTTGGATGTTGTAGTCAG-CAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAA 282966 ||| ||||| ||||||||||||| |||| || | ||| ||||||| ||| || || |||| Sbjct 899294 TTCCTTTTGAATGTTGTAGTCAGACAAG-GTTCTGCCGTCCTCTAATTGCTTACCAGCAA 899352 Query 282967 AGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGG 283026 | ||||| | |||||| || |||||||| ||||||||||| ||||| | || || Sbjct 899353 AAATCAATCTTTGTTGATCTGGAGGAATACCTTCCTTGTCTTGAATCTTAGACTTAACAT 899412 Query 283027 TATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAA 283086 | || || ||||| |||| || || || || || || |||||||| ||||||||||| | Sbjct 899413 TGTCAATGGTGTCGGAAGACTCAACCTCAAGGGTAATGGTCTTACCGGTCAAAGTCTTGA 899472 Query 283087 CGAATATCTGCAT 283099 |||| || ||||| Sbjct 899473 CGAAAATTTGCAT 899485 Score = 125 bits (138), Expect = 1e-23 Identities = 143/192 (74%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 282908 TTCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAA 282967 ||| ||||| |||||||| |||| | || | ||||| || | ||| || || || || Sbjct 898838 TTCCTTTTGAATGTTGTAATCAGACAAAGTTCTACCATCTTCCAATTGCTTACCAGCGAA 898897 Query 282968 GATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGT 283027 ||||| | |||||||||| ||||||||||| |||||||| || || | || || | Sbjct 898898 AATCAATCTTTGTTGGTCAGGTGGAATACCCTCTTTGTCTTGAATTTTAGACTTGACATT 898957 Query 283028 ATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAAC 283087 || || ||||| || | ||| ||||| | |||||| |||||||| || || || || || Sbjct 898958 GTCAATGGTGTCGGAGGATTCAACTTCCAAAGTGATAGTCTTACCAGTTAAGGTTTTGAC 899017 Query 283088 GAATATCTGCAT 283099 ||| || ||||| Sbjct 899018 GAAGATTTGCAT 899029 >seq4 Length=1221263 Score = 102 bits (112), Expect = 2e-16 Identities = 128/176 (73%), Gaps = 0/176 (0%) Strand=Plus/Plus Query 317026 GTCGGGAACCCTTCCAACTGACCGTTCACAATCGCCCTCATCAGTGTCGACTTGCCAGCA 317085 || ||||| || || | |||||||| |||| ||| |||||| || ||||| |||||| Sbjct 58421 GTTGGGAAACCGTCAACTTGACCGTTAGCAATGGCCTTCATCAAGGTGGACTTACCAGCA 58480 Query 317086 CCATTGGGGCCGCAAAGACCATACCGATTTCCCTTCTTCAGATTAAAACGGGTGTTGTTC 317145 || || || || || | ||| || | | || |||||| | || |||| |||||| Sbjct 58481 CCGTTTGGACCACACAAACCGTATCTTCTACCTCTCTTCAATCTCAATTGGGTCTTGTTC 58540 Query 317146 AGAAGAATCTTACCACCATATGCCAGAGAGAACTCACAATCACACAGGTCCTCGCC 317201 | | |||||| |||| || |||| |||||||||||| | ||||| ||| || || Sbjct 58541 AACAAGATCTTAGCACCGTAAGCCAAAGAGAACTCACAGTTACACAAGTCTTCACC 58596 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1046739052475194