Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Nakazawaea_20peltata_20[genbank_20GCA_5F001599355.1_202016-03-01]
11 sequences; 11,653,826 total letters
Query= NC_032001.1
Length=327147
Score E
Sequences producing significant alignments: (Bits) Value
seq8 178 3e-39
seq5 170 4e-37
seq4 102 2e-16
>seq8
Length=648860
Score = 178 bits (196), Expect = 3e-39
Identities = 170/218 (78%), Gaps = 0/218 (0%)
Strand=Plus/Plus
Query 282891 ACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCT 282950
|||| || || ||| || ||||||||||||||||||| | || | ||||||||
Sbjct 616600 ACCAAGTGCAAGGTGGACTCCTTTTGGATGTTGTAGTCAGACAAAGTTCTACCATCCTCC 616659
Query 282951 AGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGG 283010
| ||| || || ||||||||||| | |||||||||| || ||||||||||||||||||
Sbjct 616660 AATTGCTTACCAGCAAAGATCAATCTTTGTTGGTCAGGTGGGATACCCTCCTTGTCTTGG 616719
Query 283011 ATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTA 283070
||||| | || ||| | || || ||||| |||| ||| ||||| | || || ||||||
Sbjct 616720 ATCTTGGACTTGACGTTGTCAATGGTGTCAGAAGATTCAACTTCCAAGGTAATGGTCTTA 616779
Query 283071 CCCGTCAAAGTCTTAACGAATATCTGCATTTTCATATA 283108
|| ||||||||||||||||| || ||||| || ||||
Sbjct 616780 CCTGTCAAAGTCTTAACGAAAATTTGCATCTTTGTATA 616817
>seq5
Length=1057341
Score = 170 bits (188), Expect = 4e-37
Identities = 167/213 (78%), Gaps = 2/213 (1%)
Strand=Plus/Minus
Query 282891 ACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAG-CAAGCGTGCGGCCATCCTC 282949
|||| || || ||| ||| ||||||||||||||||| | |||| || | ||| |||||
Sbjct 274434 ACCAAGTGCAAAGTGGATTCCTTTTGGATGTTGTAGTCGGACAAG-GTTCTGCCGTCCTC 274376
Query 282950 TAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTG 283009
|| ||| || || ||||||||||| | |||||||||| || ||||| |||||||||||
Sbjct 274375 TAATTGCTTACCAGCAAAGATCAATCTTTGTTGGTCAGGTGGGATACCTTCCTTGTCTTG 274316
Query 283010 GATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTT 283069
|||||| | || ||| | || |||||||| |||| ||| ||||| | || || |||||
Sbjct 274315 GATCTTGGACTTGACGTTGTCAATAGTGTCAGAAGATTCAACTTCCAAGGTAATGGTCTT 274256
Query 283070 ACCCGTCAAAGTCTTAACGAATATCTGCATTTT 283102
||| || | ||||||||||| || ||||| ||
Sbjct 274255 ACCTGTAAGGGTCTTAACGAAAATTTGCATCTT 274223
Score = 168 bits (186), Expect = 1e-36
Identities = 159/203 (78%), Gaps = 0/203 (0%)
Strand=Plus/Plus
Query 282897 TGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGT 282956
||||| ||| ||| ||||||||||||||||||| | || | ||||| || | |||
Sbjct 899055 TGTAAAGTGGATTCCTTTTGGATGTTGTAGTCAGATAAAGTTCTACCATCTTCCAATTGC 899114
Query 282957 TTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTT 283016
|| || |||||||| || | |||||||||| ||||||||||| |||||||| || ||
Sbjct 899115 TTACCAGCAAAGATTAATCTTTGTTGGTCAGGTGGAATACCCTCTTTGTCTTGAATTTTG 899174
Query 283017 GCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTC 283076
| || || | || |||||||| |||| ||| ||||| | |||||| |||||||| |||
Sbjct 899175 GACTTAACATTGTCAATAGTGTCAGAAGATTCAACTTCCAAAGTGATAGTCTTACCAGTC 899234
Query 283077 AAAGTCTTAACGAATATCTGCAT 283099
||||||||||| || || |||||
Sbjct 899235 AAAGTCTTAACAAAGATTTGCAT 899257
Score = 149 bits (164), Expect = 1e-30
Identities = 159/210 (76%), Gaps = 0/210 (0%)
Strand=Plus/Plus
Query 282891 ACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCT 282950
|||| || || ||| ||| ||||||||||||||||| | | || | ||||| ||
Sbjct 899505 ACCAAGTGCAAGGTGGATTCCTTTTGGATGTTGTAGTCGGACAAAGTTCTACCATCTTCC 899564
Query 282951 AGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGG 283010
| ||| || || |||||||| || | |||||||||| |||||||| ||||| ||||||
Sbjct 899565 AATTGCTTACCAGCAAAGATTAATCTTTGTTGGTCAGGTGGAATACCTTCCTTATCTTGG 899624
Query 283011 ATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTA 283070
||||| | || ||| | || || ||||| || | ||| || || || || || ||||||
Sbjct 899625 ATCTTGGACTTGACGTTGTCAATGGTGTCAGAGGATTCAACCTCAAGGGTAATAGTCTTA 899684
Query 283071 CCCGTCAAAGTCTTAACGAATATCTGCATT 283100
|| || | |||||||||||| || ||||||
Sbjct 899685 CCAGTAAGAGTCTTAACGAAGATTTGCATT 899714
Score = 147 bits (162), Expect = 5e-30
Identities = 150/193 (78%), Gaps = 2/193 (1%)
Strand=Plus/Plus
Query 282908 TTCTTTTTGGATGTTGTAGTCAG-CAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAA 282966
||| ||||| ||||||||||||| |||| || | ||| ||||||| ||| || || ||||
Sbjct 899294 TTCCTTTTGAATGTTGTAGTCAGACAAG-GTTCTGCCGTCCTCTAATTGCTTACCAGCAA 899352
Query 282967 AGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGG 283026
| ||||| | |||||| || |||||||| ||||||||||| ||||| | || ||
Sbjct 899353 AAATCAATCTTTGTTGATCTGGAGGAATACCTTCCTTGTCTTGAATCTTAGACTTAACAT 899412
Query 283027 TATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAA 283086
| || || ||||| |||| || || || || || || |||||||| ||||||||||| |
Sbjct 899413 TGTCAATGGTGTCGGAAGACTCAACCTCAAGGGTAATGGTCTTACCGGTCAAAGTCTTGA 899472
Query 283087 CGAATATCTGCAT 283099
|||| || |||||
Sbjct 899473 CGAAAATTTGCAT 899485
Score = 125 bits (138), Expect = 1e-23
Identities = 143/192 (74%), Gaps = 0/192 (0%)
Strand=Plus/Plus
Query 282908 TTCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAA 282967
||| ||||| |||||||| |||| | || | ||||| || | ||| || || || ||
Sbjct 898838 TTCCTTTTGAATGTTGTAATCAGACAAAGTTCTACCATCTTCCAATTGCTTACCAGCGAA 898897
Query 282968 GATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGT 283027
||||| | |||||||||| ||||||||||| |||||||| || || | || || |
Sbjct 898898 AATCAATCTTTGTTGGTCAGGTGGAATACCCTCTTTGTCTTGAATTTTAGACTTGACATT 898957
Query 283028 ATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAAC 283087
|| || ||||| || | ||| ||||| | |||||| |||||||| || || || || ||
Sbjct 898958 GTCAATGGTGTCGGAGGATTCAACTTCCAAAGTGATAGTCTTACCAGTTAAGGTTTTGAC 899017
Query 283088 GAATATCTGCAT 283099
||| || |||||
Sbjct 899018 GAAGATTTGCAT 899029
>seq4
Length=1221263
Score = 102 bits (112), Expect = 2e-16
Identities = 128/176 (73%), Gaps = 0/176 (0%)
Strand=Plus/Plus
Query 317026 GTCGGGAACCCTTCCAACTGACCGTTCACAATCGCCCTCATCAGTGTCGACTTGCCAGCA 317085
|| ||||| || || | |||||||| |||| ||| |||||| || ||||| ||||||
Sbjct 58421 GTTGGGAAACCGTCAACTTGACCGTTAGCAATGGCCTTCATCAAGGTGGACTTACCAGCA 58480
Query 317086 CCATTGGGGCCGCAAAGACCATACCGATTTCCCTTCTTCAGATTAAAACGGGTGTTGTTC 317145
|| || || || || | ||| || | | || |||||| | || |||| ||||||
Sbjct 58481 CCGTTTGGACCACACAAACCGTATCTTCTACCTCTCTTCAATCTCAATTGGGTCTTGTTC 58540
Query 317146 AGAAGAATCTTACCACCATATGCCAGAGAGAACTCACAATCACACAGGTCCTCGCC 317201
| | |||||| |||| || |||| |||||||||||| | ||||| ||| || ||
Sbjct 58541 AACAAGATCTTAGCACCGTAAGCCAAAGAGAACTCACAGTTACACAAGTCTTCACC 58596
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1046739052475194
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |