Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nakazawaea_20peltata_20[genbank_20GCA_5F001599355.1_202016-03-01] 11 sequences; 11,653,826 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq5 129 1e-24 seq8 120 7e-22 >seq5 Length=1057341 Score = 129 bits (142), Expect = 1e-24 Identities = 171/234 (73%), Gaps = 5/234 (2%) Strand=Plus/Plus Query 177910 AGGTTAAAATGCTCCAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGG 177969 |||| || |||| |||||||||| || || || ||||| || || || ||| | || | Sbjct 274218 AGGTCAAGATGC---AAATTTTCGTTAAGACCCTTACAGGTAAGACCATTACCTTGGAAG 274274 Query 177970 TGGAAAGCTCAGACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCC 178029 | ||| || ||||| || || |||||||| ||||| || ||||| ||||| |||| Sbjct 274275 TTGAATCTTCTGACACTATTGACAACGTCAAGTCCAAGATCCAAGACAAGGAAGGTATCC 274334 Query 178030 CTCCGGACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTG 178089 | || ||||| ||| || | ||||| || || || || | || || || || || |||| Sbjct 274335 CACCTGACCAACAAAGATTGATCTTTGCTGGTAAGCAATTAGAGGACGGCAGAAC-CTTG 274393 Query 178090 -CCGATTATAACGTCCAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142 |||| || ||| ||||||| ||||| || |||| | ||||||||| | ||| Sbjct 274394 TCCGACTACAACATCCAAAAGGAATCCACTTTGCACTTGGTTTTGAGATTGAGA 274447 Score = 102 bits (112), Expect = 2e-16 Identities = 156/220 (71%), Gaps = 2/220 (1%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||||||||| || ||| | || || || || || ||||| ||||| || || ||| Sbjct 899482 CAAATTTTCGTCAAGACTTTGACCGGTAAGACCATTACCCTTGAGGTTGAGTCTTCCGAC 899423 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| || || || || |||||||| ||||| ||||| || ||||| || || ||| Sbjct 899422 ACCATTGACAATGTTAAGTCTAAGATTCAAGACAAGGAAGGTATTCCTCCAGATCAACAA 899363 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTG-CCGATTATAACGT 178102 || | || || || || || || | || || || || || |||| | || || ||| | Sbjct 899362 AGATTGATTTTTGCTGGTAAGCAATTAGAGGACGGCAGAAC-CTTGTCTGACTACAACAT 899304 Query 178103 CCAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142 ||||| ||||| || || || | || || ||| | ||| Sbjct 899303 TCAAAAGGAATCTACCCTTCACTTGGTCTTAAGATTGAGA 899264 >seq8 Length=648860 Score = 120 bits (132), Expect = 7e-22 Identities = 158/219 (72%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||||||||| || ||| | ||||| || || || ||| | || || ||| || ||| Sbjct 616805 CAAATTTTCGTTAAGACTTTGACAGGTAAGACCATTACCTTGGAAGTTGAATCTTCTGAC 616746 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| || |||||||| ||||| || ||||| || || ||||| || ||||| ||| Sbjct 616745 ACCATTGACAACGTCAAGTCCAAGATCCAAGACAAGGAGGGTATCCCACCTGACCAACAA 616686 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | ||||| || || || || | || ||||| || ||| | | || || ||| || Sbjct 616685 AGATTGATCTTTGCTGGTAAGCAATTGGAGGATGGTAGAACTTTGTCTGACTACAACATC 616626 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142 ||||| || || || |||| | || |||||| | ||| Sbjct 616625 CAAAAGGAGTCCACCTTGCACTTGGTCTTGAGATTGAGA 616587 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203731030349134