Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Nakazawaea_20peltata_20[genbank_20GCA_5F001599355.1_202016-03-01]
11 sequences; 11,653,826 total letters
Query= NC_033775.1
Length=376207
Score E
Sequences producing significant alignments: (Bits) Value
seq5 129 1e-24
seq8 120 7e-22
>seq5
Length=1057341
Score = 129 bits (142), Expect = 1e-24
Identities = 171/234 (73%), Gaps = 5/234 (2%)
Strand=Plus/Plus
Query 177910 AGGTTAAAATGCTCCAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGG 177969
|||| || |||| |||||||||| || || || ||||| || || || ||| | || |
Sbjct 274218 AGGTCAAGATGC---AAATTTTCGTTAAGACCCTTACAGGTAAGACCATTACCTTGGAAG 274274
Query 177970 TGGAAAGCTCAGACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCC 178029
| ||| || ||||| || || |||||||| ||||| || ||||| ||||| ||||
Sbjct 274275 TTGAATCTTCTGACACTATTGACAACGTCAAGTCCAAGATCCAAGACAAGGAAGGTATCC 274334
Query 178030 CTCCGGACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTG 178089
| || ||||| ||| || | ||||| || || || || | || || || || || ||||
Sbjct 274335 CACCTGACCAACAAAGATTGATCTTTGCTGGTAAGCAATTAGAGGACGGCAGAAC-CTTG 274393
Query 178090 -CCGATTATAACGTCCAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142
|||| || ||| ||||||| ||||| || |||| | ||||||||| | |||
Sbjct 274394 TCCGACTACAACATCCAAAAGGAATCCACTTTGCACTTGGTTTTGAGATTGAGA 274447
Score = 102 bits (112), Expect = 2e-16
Identities = 156/220 (71%), Gaps = 2/220 (1%)
Strand=Plus/Minus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
||||||||||| || ||| | || || || || || ||||| ||||| || || |||
Sbjct 899482 CAAATTTTCGTCAAGACTTTGACCGGTAAGACCATTACCCTTGAGGTTGAGTCTTCCGAC 899423
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
||||| || || || || |||||||| ||||| ||||| || ||||| || || |||
Sbjct 899422 ACCATTGACAATGTTAAGTCTAAGATTCAAGACAAGGAAGGTATTCCTCCAGATCAACAA 899363
Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTG-CCGATTATAACGT 178102
|| | || || || || || || | || || || || || |||| | || || ||| |
Sbjct 899362 AGATTGATTTTTGCTGGTAAGCAATTAGAGGACGGCAGAAC-CTTGTCTGACTACAACAT 899304
Query 178103 CCAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142
||||| ||||| || || || | || || ||| | |||
Sbjct 899303 TCAAAAGGAATCTACCCTTCACTTGGTCTTAAGATTGAGA 899264
>seq8
Length=648860
Score = 120 bits (132), Expect = 7e-22
Identities = 158/219 (72%), Gaps = 0/219 (0%)
Strand=Plus/Minus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
||||||||||| || ||| | ||||| || || || ||| | || || ||| || |||
Sbjct 616805 CAAATTTTCGTTAAGACTTTGACAGGTAAGACCATTACCTTGGAAGTTGAATCTTCTGAC 616746
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
||||| || |||||||| ||||| || ||||| || || ||||| || ||||| |||
Sbjct 616745 ACCATTGACAACGTCAAGTCCAAGATCCAAGACAAGGAGGGTATCCCACCTGACCAACAA 616686
Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103
|| | ||||| || || || || | || ||||| || ||| | | || || ||| ||
Sbjct 616685 AGATTGATCTTTGCTGGTAAGCAATTGGAGGATGGTAGAACTTTGTCTGACTACAACATC 616626
Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142
||||| || || || |||| | || |||||| | |||
Sbjct 616625 CAAAAGGAGTCCACCTTGCACTTGGTCTTGAGATTGAGA 616587
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1203731030349134
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |