Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ogataea_20methanolica_20[genbank_20GCA_5F001600755.1_202016-03-01] 32 sequences; 15,086,366 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq5 381 7e-101 seq1 100 3e-16 >seq5 Length=1013952 Score = 381 bits (422), Expect = 7e-101 Identities = 1435/2222 (65%), Gaps = 81/2222 (4%) Strand=Plus/Plus Query 52808 GTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGA 52867 ||||||||||| | ||| || || | || || | || |||||||| || || || | | Sbjct 376721 GTGAATTGAATAGCAGCAGAAGCAGCTTGTGTTCTTAAGTAGTACATACCAGTCTTCAAA 376780 Query 52868 CCGAGACTCCATCCGTAAAAATGCATACTTGTTAGTTTGGA-ATAACTCGGATCTGCTAT 52926 || |||| ||||| || ||||| |||| || ||| | || ||| || Sbjct 376781 CCCTTCTTCCAACCGTAGAAGTGCATGGACGTTAACTTACCCATAGTTGGGTTCTT-TAA 376839 Query 52927 ATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTAT 52986 || || ||||| |||||| |||||| ||| | || || || || |||||||| | || Sbjct 376840 GTGAATGTTCATTGATTGAGATTGATCAATGTAAGCACCTCTATCAGCAGCCATATCAAT 376899 Query 52987 GATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAAG 53046 || ||||||||| ||||||||| | || || || | | ||| | || ||||||| Sbjct 376900 AATGCTCTTTTGTGAAATTTCCCAGACTGTCTTGTATAATTTCTTTAATTCGTCTGGAAT 376959 Query 53047 GTTTG-TA--TTCTGAATAGATCCACCATCTACCATAATCCTATTCTTGATCTCATCATT 53103 ||| | || || |||||||| ||| |||| || || |||||| || |||| | Sbjct 376960 GTTCGGTAAGTTTTGAATAGAGCCATTATCTTGAATGATGAAATTCTTCATAGCATCGCT 377019 Query 53104 CCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCC 53163 ||||| | || |||| |||| || | || || || || | ||| ||||| || Sbjct 377020 CCATAGACCTAAATCAACTAAATCTCTTAGCAAATATGGGTTGACAATTTGGAATTCACC 377079 Query 53164 AGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACAGACTCATTATTTCC 53223 | | ||||| | | |||||| ||| || || ||||| | |||| || | || Sbjct 377080 TGCTAGAACTCTTCTTGAGTAAATGTTAGAAGTGTATGGTTCGAAGCACTCGTTGTAACC 377139 Query 53224 CAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTATTTCTAAGACC 53283 ||||||||| | |||||| ||||| ||||| || |||| ||||||| ||||| | ||| Sbjct 377140 CAAAATTTGTGAAGTTGAAGCAGTAGGCATTGGAGCCAGCAATAAAGAGTTTCTCAAACC 377199 Query 53284 GTATGTTCTGATTTTATCTTTTAGAGGTTCCCAATTCCAAAGATCCGACGG--TACAACN 53341 || | ||| | || |||| | ||||||| ||| | ||| | || | || Sbjct 377200 GTGCTTGGAAATTCTTTCCTTTAATAGATCCCAATCCCATAAATCAGTTGGCTTCTTACC 377259 Query 53342 NNNNNNNNNNNNNNTTGTAGAATACCGTTA----CTGGCGTACGATCCTACATATGTATC 53397 ||||| | ||| | | |||| | || | | | || | || Sbjct 377260 CCATAAGTCGAA--TTGTAATAGACCTTGAGAAGCTGGAGAAC---CTTGGAAAT-TCTC 377313 Query 53398 GTATGGTCCTTCCTTCTCAGCTAGTTCACAACTC-------GCCTCTAATGCACCGTAAT 53450 ||||| || || | || | | |||| || || ||||| ||| | | | Sbjct 377314 ATATGGCCCATC----TAAGATTG---ACAATTCAATCGAAGCTTCTAAAGCAGCATGGT 377366 Query 53451 AAATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCAAATGGATAAT 53510 | |||||||| || || | | || | || || || || ||||||||| |||| Sbjct 377367 ACATGGTTTCAAAAATTTGAATGTTCAAGTCCCTGGCCTCTGGGGAATCAAATGG-TAAT 377425 Query 53511 TT-AAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTC 53569 | || | || || |||| || || ||||||||||||| | | || ||||| | | || Sbjct 377426 CTCAATTGCATGAAAACGTCAGCCAAACCTTGAACACCAACAGCAATTGGTCTGTTTTTC 377485 Query 53570 TTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGG 53629 | ||||| || ||| ||| || ||| ||||| || | || || || | || | | Sbjct 377486 ATGTTAGATGTTCTAGCCTCTTCAACAGGGTAATAGTTTCTGTCAATGATCATGTTCAAG 377545 Query 53630 TTTCTGACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAAT---------TGT 53680 || | ||| || || || || | |||||| ||| | | | | | Sbjct 377546 TTCTTAGCAACAACCTTAGTAACTTCATGCAGTTTTTCAAAGTTATACCATGATGACTCT 377605 Query 53681 CCATCT-ATT--ACAAA--CATGTTCAATGCAATAGATGCCAGATTACAAACGGCTACCT 53735 ||| ||| || || || | ||| || | || || || ||||| ||||| || | Sbjct 377606 GAATCCGATTCGACGAATGCAGG--CAAAGCCACGGAAGCTAGGTTACAGACGGCAACTT 377663 Query 53736 CATTAGCATCCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTA 53795 | | | | ||||| | || ||| ||| | ||| |||| || || || | Sbjct 377664 CTTCTGGTGAGGAATATTCAACAATTTCACAGCACAAGTTAGATGACTTAATAGTACCCA 377723 Query 53796 AATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGCGTACCAG 53855 | || | ||| || |||| ||||| |||||||| || | || ||||| || || | Sbjct 377724 AGTTCTTTTGGTTGGATTTTTCATTACAAGCATCCTTGTATAACATAAATGGAGTGCCTG 377783 Query 53856 TTTCAATCTGGGATTCTATAATCGCTTTCCAGACGACACGAGCCTTTATTATAGATT-TG 53914 |||| | || | ||||| ||| || | ||| | ||||||| | || || | Sbjct 377784 TTTCCGTTTGTGCTTCTAAAATAGCATACCATAGCTTTTGAGCCTTGAC---AGTTTGTC 377840 Query 53915 TATCTCTT--TTCTCTTTCGTATAGTGTATACAATCGTTCAAACTCGTCTCCCCAAACAT 53972 || |||| |||| ||| ||| ||||| || |||||| || || || ||| | Sbjct 377841 TACCTCTGCCTTCTTCTTCATATTTGGTATATAAAGCTTCAAATTCATCACCGTAAAGTT 377900 Query 53973 TGTCCAATCCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTC 54032 || || ||||| ||| || | | || | ||| | | | | || |||| Sbjct 377901 CGTGTAAACCAGGGGCTTCGGAAGGGGAGAATAAAGTCCATTGAGCATTCTGCTCAACTC 377960 Query 54033 GTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCT 54092 |||||||| | ||| |||||||| | || ||||||||||| | ||| || | Sbjct 377961 TCTTCATAAACAAATCTGGAATCCATAAGGCCGGGAATAGATCTCTAGCTCTGATCTCTT 378020 Query 54093 CGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCA 54152 | || || ||||||| ||| ||||| ||| | | |||||||||||||| ||||| | Sbjct 378021 CCTTACCGTGATTCTTTCTAATATCGATGAAATCAAAGATATCAGAATGCCATGGTTCAA 378080 Query 54153 AGTATATGGTCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGT 54212 ||||| | | | | || || | |||||| || ||||| || | ||||| || |||| Sbjct 378081 TGTATAAAGCGAAAGCACCTGGTCTTTTGTTACCCCCCTGGTCAACATATCTTGCAGTGT 378140 Query 54213 TATTATAAACTCTCAACATTGGAATAATACCATTGGATGCACCATTGGTCCCGGAGATAT 54272 | || ||||||| | ||||||||| ||||| || || | |||||| || |||| |||| Sbjct 378141 TGTTGAAAACTCTAATCATTGGAATGATACCGTTAGAAGTACCATTAGTACCGGCAATAT 378200 Query 54273 AGCTTCCACTGGCACGAATATTACTAATTGATAGACCTATCCCCCCTGCCATTTTAGAGA 54332 | ||| | | | ||| ||| ||| || ||| || || || || | || || | Sbjct 378201 ATGAACCAGTAGATCTAATGTTATGAATGTGTAAACCAATACCACCAGCAGTCTTGGAAA 378260 Query 54333 TTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAA 54392 | || || ||| | || || |||||||| || || || ||| ||| || |||| || Sbjct 378261 TCAAAGCACATTGCTTCAAAGTATCATAAATACCATCGATAGAATCGTCTTTCATAGCAA 378320 Query 54393 GTAGAAAACAGCTAGACATTTG---GTGACGACTAGTTCCCGCATTAAATAAGGTAGGAG 54449 || ||| || ||||||||| |||| | ||| || ||||||||||| || || | Sbjct 378321 CTAAAAAGCATGAAGACATTTGTGCGTGAGG---AGTACCAGCATTAAATAATGTTGGTG 378377 Query 54450 AAGCGTGCGTAAACCATTTTTCAGA-AAGTAGATTGTACGTCTCGAT-AGCTGAGTCTAT 54507 ||||||| ||||| || |||| || | |||| || || || || || | || || | || Sbjct 378378 AAGCGTGAGTAAAGTATCTTTCTGACATGTAG-TTATAAGTTTCTATGACCTTAG-CAAT 378435 Query 54508 A-TCCCATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGA 54566 | | || | || || || | | || | ||| | | |||||| ||||||||| | | Sbjct 378436 ATTATCACCG-TGGATACCAATAGAAACTCTCATAACTAAGTGCTGTGGTCTTTCAGCAA 378494 Query 54567 TCTTGTTGTTTATTTTCAGCAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGT 54626 ||| ||| ||| || || ||| | |||||||| |||||||| |||||||||| Sbjct 378495 CAGCACCGTTAATTCTCAATAAATATGATCTCTCCAAAGTCTTAAAACCGAAATAGTTGT 378554 Query 54627 ATGAAAAGTCTCGTTCGTAAATAATAACTGAGTTGAGTTTATCCTTATATTTGTTAACTA 54686 | || || || || ||||||| |||| | || || | || ||| ||| || | ||| | Sbjct 378555 AGGAGAAATCACGGTCGTAAACAATAGCAGAATTCAATTCATCACTATGCTTTTGAACGA 378614 Query 54687 CATCCATGGTAA---TACTT-GAAATAATCGGAGAATGTTTCCCATTTTTAGGATTGACA 54742 || |||| | ||| || || || |||| | | ||||| || || |||| | Sbjct 378615 TGTC----GTAAACTTCCTTAGAGATCATTGGAGCCGGCTGACCATTCTTTGGGTTGATA 378670 Query 54743 TAGTTAAATAAATCCTTCATCACTTCACTAAATAGtttttttGTTTCTTTGTGTAGATTT 54802 || || |||| | | || ||| | |||| |||| |||| | ||||||| || Sbjct 378671 TAAGTATATAATTGTTCAATAACTGAAGAAAATTGTTTGGTTGTCTGCTTGTGTAAGTTA 378730 Query 54803 GATACGGCTATTCTAGCGGCTAGAATGGCATAATCCGGATG-TTG--TGTAGTACAAGTG 54859 || | |||||||| || |||| |||||||||| || || || ||| || || Sbjct 378731 GAAATAGCTATTCTGGCAGCTAAGGTGGCATAATCTGGGTGAATGGTTGTCATATAA--- 378787 Query 54860 GCTGCTATTTCGGCTGTCAGAGTGTCCAATTCTACCGTTGTTACTCCATTATATATTCCT 54919 || || |||| || | || | |||||||| | || || || || ||||| | || Sbjct 378788 GCAGCAGTTTCAGCAGCCAAGTTATCCAATTCGATAGTGGTAACACCGTTATAAACACCA 378847 Query 54920 TGGATAACCTTCATAGCTATTTTAATAGGATCTATATGATCAGTGTTTAAGCCATAACAT 54979 ||||| | || ||| || || ||| | ||| | | || ||| || |||||| Sbjct 378848 GAAATAACACGCTGAGTAATTGCAACAGCATCCACATGTTTTGGGTCTAAACCGTAACAT 378907 Query 54980 AA 54981 || Sbjct 378908 AA 378909 Score = 273 bits (302), Expect = 3e-68 Identities = 622/918 (68%), Gaps = 31/918 (3%) Strand=Plus/Minus Query 23823 TCTTGAGACATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTT 23882 ||||| | |||||| || |||||||| || ||| | ||||| || || || || Sbjct 648027 TCTTG-GCCATAACACCAGCCTTTTGGTAGTCGGACACTCTCTTTTCAAAGAAGTTGGTC 647969 Query 23883 TTACCTTCTAATGATATATTTTCCATGAAATCGGATGGATTGGTAACATTATAGATTCTT 23942 ||||| |||| || ||||||||||| || ||| |||| ||| |||| || ||| | ||| Sbjct 647968 TTACCAGCTAAAGAAATATTTTCCATAAAGTCGAATGGGTTGTTAACCTTGTAG-TGCTT 647910 Query 23943 -TTAAATCCCAATTCAGA-AATCA--ATCTATCTGCGACAAACTCCATATATGTTTTCAT 23998 || | || || ||| ||| | ||||||| || |||||||| | ||| ||| Sbjct 647909 CTTGCAACCTAA---AGATAATAATAATCTATCAGCAACAAACTCAACGTATTGGCACAT 647853 Query 23999 CATTTCACAATTCATTCCTATAAGTTTAACTGGAAGAGCCACAGT-AAGAAATTCTTGTT 24057 || ||| ||||| || | | | | ||| | || | || ||| | |||| || Sbjct 647852 CAATTCTGCGTTCATACCCAATAATGCACATGGTAAGGCATCCGTGAAGTATCTCTT-TT 647794 Query 24058 CAATAGAGACCGCGTCTGTTATAATAGATCTT----ACTGTTTCTTCACTCGGTGGATAC 24113 |||| || || || || ||||| ||| || |||||||| | || | | Sbjct 647793 CAATGTCAACTGCTTCAGTAATAAT----CTTGACAACAATTTCTTCATTTGGAGTGTTG 647738 Query 24114 AATAAATGTTTAAACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATT 24173 | || || | ||||| || ||||| ||||| ||| || ||||||| ||| Sbjct 647737 TTCATGTGAGAGAATAATAAACAAGCAAAATCAGTGTGTAAACCTTCATCTCTACAAATC 647678 Query 24174 AATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAC 24233 ||||| || || || || | || ||||||||||| | |||||| | |||||| || || Sbjct 647677 AATTCATTAGAGAAAGTTAAGCCCGGCATTAGGCCTCTCTTTTTCAACCAAAAGATAGAA 647618 Query 24234 GCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTTTCTCC- 24292 |||||||| ||||| ||||| || ||||| || || |||||||||| | |||||| | Sbjct 647617 GCAAATGAACCAGAGAAGAAGATACCTTCGACAGCAGCAAAGGCAACTAATCTTTCGGCG 647558 Query 24293 -ATAACCGGCGCTGTC-ATGT--ATCCA-CTTTTGAGCCCAATCGGCCTTCTTTTTTACA 24347 |||| | | | || ||| ||||| || || ||||| || ||||| | || | Sbjct 647557 AATAA--GCCATTTTCGTTGTTCATCCATCTCATG-GCCCAGTCAGCCTTTTCCTTGATG 647501 Query 24348 CAAGGCATTGTCTCTATAGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAT 24407 ||||| || ||||| |||||||| || | ||| || || ||| |||||||| Sbjct 647500 CAAGGAATAGTCTCAATAGCATTGAATAAGAAGTCAGCCTCCTTTGGATCCTTAACATAG 647441 Query 24408 GTATCAATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCG 24467 || || ||||| | || |||| || || |||||||| || || || || ||| Sbjct 647440 GTGTCGATCAATAATGAGTAAGTTTCAGAGTGGATGTTTTCCATCATGATCTGGAAACCG 647381 Query 24468 TAGAAACATCTAGCCTCGGTAATCTGTACTTCTATACAAAATCGTTCTGCTAAATTTTCA 24527 |||||||| | || || | ||| || ||||| | |||| ||| | || || || Sbjct 647380 TAGAAACACTTGGCTTCTGGAATTTGGACTTCGGCAGAAAAGTTTTCAACCAAGTTCTCG 647321 Query 24528 TTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCG 24587 || || || ||||| ||||||||| || || || || | || ||| || ||||| Sbjct 647320 TTAACAATACCGTCGGAGGCTGCAAAGAAAGCTAAAACTCTTGAAATGAAAAATCTTTCG 647261 Query 24588 TCTGGTGTTAGT---TTATTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACT 24644 | ||| | || ||||| |||| |||| || |||| ||| | |||||| | Sbjct 647260 CTTTCATTTAATCTGTTGTTCCAGTCATGAGTATCCTTTGATAAATCAATTTCTTCTGCA 647201 Query 24645 GTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCATGATATTGAATTGGA 24704 ||||| || || || || ||||| || ||||| | |||||| ||||| |||| |||||| Sbjct 647200 GTCCAGAAAGAAGCTTCAGCCTTCTTGTACATTTGCCAGATTTCATGGTATTTAATTGGG 647141 Query 24705 AAAATAACAAATCTATTT 24722 || | ||||||||| ||| Sbjct 647140 AACAAAACAAATCTTTTT 647123 >seq1 Length=3681944 Score = 100 bits (110), Expect = 3e-16 Identities = 318/486 (65%), Gaps = 9/486 (2%) Strand=Plus/Plus Query 52843 TAGATAGTACATTCCCGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTTGTTAG 52902 || |||||| || || |||||||| || |||| | ||||| ||||||||||| || Sbjct 1059276 TAAATAGTAAATACCAGTTTTTAGTCCTTTCTTCCAAGCATAAAAGTGCATACTTGTAAG 1059335 Query 52903 TTTGGAATAACTCGGATCTGCTATATGGATA--TTCATAGATTGACTTTGATCGATGAAG 52960 || || | || || || ||| ||| || | |||||| ||||| ||||| Sbjct 1059336 CTTCGACATTGTTGGTTCC-CTC-ATGAATAAGTTTAATGATTGAGAATGATCAATGAAT 1059393 Query 52961 GCTCCCCTGTCTGCAGCCATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTA 53020 | | | | ||| || | ||| | || | |||||| ||||||||||||| |||||| Sbjct 1059394 GGTGCACGGTCAGCTGACATATCAATTAAATGCTTTTGAGGAATTTCCCAAACTGTTTTA 1059453 Query 53021 TAAACTCGCTTAATATCTTCTGGAAGGTTTGTATTC---TGAATAGATCCACCATCTACC 53077 || | ||||||||| | ||| | | || || ||||| || || | Sbjct 1059454 TACAAAGACTTAATATCATTTGGTATTTCATTAATCAATTGAATTGACCCGTTGTTGCTT 1059513 Query 53078 ATAATCCTATTCTTGATCTCATCATTCCATAATTTTCTCTCGGTTAAAAC-TCTAAGGAG 53136 || ||| ||||||||| | |||||||||| || ||| ||||| | ||| | | Sbjct 1059514 ATTATCTGATTCTTGATATTCTCATTCCATAGATTGAGTTCGATTAAATCGTCT-ACCAA 1059572 Query 53137 ATGCGGATTAACTACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGT 53196 || |||||| | |||||| || || || || ||||| | |||||||||||| || Sbjct 1059573 ATAGCTATTAACGATTTGAAACTCACCGGATAAGACTCTTCTTGTGTAAATATTAGATGT 1059632 Query 53197 ATACGGTTCCACAGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGG 53256 || || | | | ||| | ||| | || || | ||| || ||||| ||||| Sbjct 1059633 GATTGGCTCAAAACATTCAGTGAATCCTAGTATCTGTGAAGTCGAGGCAGTAGGCATTAA 1059692 Query 53257 TGCCACCAATAAACTATTTCTAAGACCGTATGTTCTGATTTTATCTTTTAGAGGTTCCCA 53316 || ||||| || ||||| | ||||| | | | ||||| |||| | | ||||| Sbjct 1059693 GGCAACCAACAACGAGTTTCTGACACCGTTCGATTTTATTTTCGCTTTCAATGAATCCCA 1059752 Query 53317 ATTCCA 53322 || ||| Sbjct 1059753 ATCCCA 1059758 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593721362511360