Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ogataea_20methanolica_20[genbank_20GCA_5F001600755.1_202016-03-01] 32 sequences; 15,086,366 total letters Query= NC_001993.1 Length=236120 Score E Sequences producing significant alignments: (Bits) Value seq2 143 4e-29 seq1 131 3e-25 seq9 118 2e-21 >seq2 Length=3419278 Score = 143 bits (158), Expect = 4e-29 Identities = 173/233 (74%), Gaps = 2/233 (1%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 |||||||| || | || || |||| || || || || ||| ||||| | ||| || Sbjct 1617318 ATGCAAATTTTCGTTAAAACCTTAACTGGTAAGACCATCACTTTAGAGGTCGAATCATCC 1617259 Query 124599 GATACAATTTCTAAT-TTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 || || ||| || |||| || || || |||||||| |||||||| ||||||||||| Sbjct 1617258 GACACTATTGACAACGTTAAGTCA-AAGATCCAAGATAAGGAAGGTATCCCACCTGATCA 1617200 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 ||| || | || ||||| || || |||||||| ||| || |||| ||| || || || Sbjct 1617199 ACAGAGATTAATCTTTGCTGGTAAGCAATTAGAAGATGGTAGAACTTTATCCGACTACAA 1617140 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTATTA 124770 || ||||| ||||||||||| || ||||| || | ||| |||||||||||| Sbjct 1617139 CATCCAAAAGGAATCAACTTTACACTTGGTCTTGAGATTAAGAGGTGGTATTA 1617087 >seq1 Length=3681944 Score = 131 bits (144), Expect = 3e-25 Identities = 171/237 (72%), Gaps = 0/237 (0%) Strand=Plus/Minus Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAA 124597 ||||||||| || | || || |||| || || || || ||| ||||| | ||| | Sbjct 1219339 AATGCAAATTTTCGTTAAAACCTTAACTGGTAAGACCATCACTTTAGAGGTCGAATCCTC 1219280 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 || || ||| ||| | || || || ||||| || |||||||| ||||||||||| Sbjct 1219279 AGACACCATTGACAATGTCAAGTCCAAGATCCAAGACAAGGAAGGTATTCCACCTGATCA 1219220 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 |||||| | || ||||| || || ||||| || ||| || |||| ||| || || || Sbjct 1219219 ACAAAGATTAATCTTTGCTGGTAAGCAATTGGAAGATGGTAGAACCTTATCTGACTACAA 1219160 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTATTAAAAA 124774 |||||||| ||||| || ||||| || || ||| | ||| |||||||| ||| || Sbjct 1219159 CATTCAAAAGGAATCCACCTTGCACTTAGTCTTAAGATTAAGAGGTGGTGGTAAGAA 1219103 Score = 89.7 bits (98), Expect = 8e-13 Identities = 115/159 (72%), Gaps = 0/159 (0%) Strand=Plus/Plus Query 205689 TTGATCAAATCCTTGATTTGTATAATTTGTATCCATATCAATATATTTAGCACCAAAATG 205748 |||||| || |||| | |||||||| |||||| |||| || | ||||||||||| Sbjct 404408 TTGATCGAAACCTTTACCTGTATAATCTGTATCGCAGTCAACGTAGTCTGCACCAAAATG 404467 Query 205749 ACGCCATTGAAAACCATAAACTGGACCTAAATCACCTTCTTTTCTATCATTAAAACCACG 205808 | |||||| |||||||| ||||| || | ||||||||| | ||||| | | |||| | Sbjct 404468 TCTCCATTGGAAACCATACACTGGGCCAAGGTCACCTTCTCTCCTATCTGTTAGACCAAG 404527 Query 205809 tttttttATATATTTTAATGATCCATTTTCATCCCAAAT 205847 | | || ||||| | ||||| || | ||||| || Sbjct 404528 TGAATCTAAATATTCTCTAGATCCGTTACCTTCCCAGAT 404566 >seq9 Length=470967 Score = 118 bits (130), Expect = 2e-21 Identities = 127/168 (76%), Gaps = 0/168 (0%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 |||||||| || | || || |||| || || || || || ||||| ||||| | Sbjct 292509 ATGCAAATTTTCGTTAAAACTTTAACTGGTAAGACCATCACCTTAGAGGTTGAATCTTCC 292450 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 ||||| ||| |||| | || |||||| |||||||| |||||||| |||||||||||| Sbjct 292449 GATACTATTGATAATGTGAAGTCGAAAATCCAAGATAAGGAAGGTATTCCACCTGATCAA 292390 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTA 124706 ||||| | || ||||| || ||||||||||| || || |||||||| Sbjct 292389 CAAAGATTAATCTTTGCTGGTAAACAATTAGAAGACGGTAGAACATTA 292342 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 755455697817600