Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ogataea_20methanolica_20[genbank_20GCA_5F001600755.1_202016-03-01] 32 sequences; 15,086,366 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq5 210 2e-49 seq9 84.2 2e-11 seq2 84.2 2e-11 >seq5 Length=1013952 Score = 210 bits (232), Expect = 2e-49 Identities = 1184/1867 (63%), Gaps = 76/1867 (4%) Strand=Plus/Plus Query 22154 TAATACATGCCCGTCTTCAGACCCATCTTCCACGCGTAAAAATGTATCGACGTCAATTTT 22213 || ||||| || ||||||| |||| ||||||| |||| || || || ||||| || || Sbjct 376760 TAGTACATACCAGTCTTCAAACCCTTCTTCCAACCGTAGAAGTGCATGGACGTTAACTTA 376819 Query 22214 CC-ATAACTCGGC-----AAGTCCATGTACACATTGAACGACTGACTCTGATCGATAAAC 22267 || ||| | || |||| |||| || |||| || || | |||| || | Sbjct 376820 CCCATAGTTGGGTTCTTTAAGTGAATGTTCA--TTGATTGA--GATT--GATCAATGTAA 376873 Query 22268 GCTCCTCGATCGGCGGCCATATTTATCAATGTACGCATC-GACATTTCCCATACGGTCTT 22326 || |||| ||| || ||||||| || |||| | | || |||||||| || ||||| Sbjct 376874 GCACCTCTATCAGCAGCCATATCAAT-AATGCTCTTTTGTGAAATTTCCCAGACTGTCTT 376932 Query 22327 GTACAGTTGCCTGATCTCTAACGGTATCGATTCGATCC--TCTGGACGGACCCGTTATTG 22384 ||| | || | | | || || || |||| | | || | || || |||| Sbjct 376933 GTATAATTTCTTTAATTCGTCTGGAATG--TTCGGTAAGTTTTGAATAGAGCCATTATCT 376990 Query 22385 TGTATGATCAAATTTTTAATCGTATCGTTCCACAAACCGATGGCGGTCAAATCTTTGACC 22444 || ||||| ||||| || || | |||| |||| | ||| | | |||||| | | | Sbjct 376991 TGAATGATGAAATTCTTCATAGCATCGCTCCATAGACCTAAATCAACTAAATCTCTTAGC 377050 Query 22445 AGATGACGGTTCACCACTTGAAACTCGCCGGACAAGACGCGGCGTTGGTAAATGTTGGAT 22504 | || |||| || | ||| || || || | | || | | | ||||||||| || Sbjct 377051 AAATATGGGTTGACAATTTGGAATTCACCTGCTAGAACTCTTCTTGAGTAAATGTTAGAA 377110 Query 22505 GTGAACGGTTCGAAAGATTCATTGTTTCCCAGTATCTGAGCGGTCGAAGCGGTCGGCATC 22564 ||| | |||||||| | || |||| |||| || || | || ||||| || ||||| Sbjct 377111 GTGTATGGTTCGAAGCACTCGTTGTAACCCAAAATTTGTGAAGTTGAAGCAGTAGGCATT 377170 Query 22565 GGCGCCAACAGTAGCGAGTTTCTCAAGCCGTGCTTTGAAATTTTACTCTTGAGCATCGA- 22623 || |||| || || ||||||||||| |||||||| |||||| | ||| | || || Sbjct 377171 GGAGCCAGCAATAAAGAGTTTCTCAAACCGTGCTTGGAAATTCTTTCCTTTA--ATAGAT 377228 Query 22624 -CCAGTCCCACAGATCGGACGGCGTCACATTGTCCCACATATCGTATTGCAACACGCCGC 22682 ||| ||||| | ||| | ||| || || |||| | ||| |||| || | || Sbjct 377229 CCCAATCCCATAAATCAGTTGGCTTC---TTACCCCATAAGTCGAATTGTAATAGACCTT 377285 Query 22683 GACTCGCCGGGCTGCCTTCGTACGTTTCGTACGGACCATATATCGCGG-CAAGT---TCG 22738 || || || |||| | | | || || || |||| || | ||| | ||| Sbjct 377286 GAGAAGCTGGAGAACCTTGGAAATTCTCATATGGCCCATCTAAGATTGACAATTCAATCG 377345 Query 22739 CAGCTCGCCTCCAACGCGCCGTAATATATAGTCTCGAAGATTTTCTTGTTCAATTCGGCG 22798 |||| || || || | | || || || || || |||| ||||||| || | Sbjct 377346 AAGCT----TCTAAAGCAGCATGGTACATGGTTTCAAAAATTTGAATGTTCAAGTCCCTG 377401 Query 22799 GCGGCGACGCTTTCGTACGGCATACGCATCATCACGAACGCGTCCGCCATACCCTGAACG 22858 || | | || | || | | || || ||| |||| |||| ||| ||||| Sbjct 377402 GCCTCTGGGGAATCAAATGGTAATCTCAATTGCATGAAAACGTCAGCCAAACCTTGAACA 377461 Query 22859 CCTATACCGATCGGTCGGTTTTTCAGATTCGACACTTTTGCCTCGGGCAAAGGATACCAA 22918 || | | | || |||| |||||||| || || | | ||||| | ||| || | Sbjct 377462 CCAACAGCAATTGGTCTGTTTTTCATGTTAGATGTTCTAGCCTCTTCAACAGGGTAATAG 377521 Query 22919 TTCGAATCGATTGTTCTGTTCAAGTTTCTGGTCACAATTTTCGTTATNNNNNNNNNNNNN 22978 || || || | |||||||||| | | |||| || || | Sbjct 377522 TTTCTGTCAATGATCATGTTCAAGTTCTTAGCAACAACCTTAGTAACTTCATGCAGTTTT 377581 Query 22979 TCAAAGTCGTAA-------ACGC-----CCGATTGTACAACAAACTTGTTGACG--GCGA 23024 ||||||| || || | |||||| | || || || | | || | Sbjct 377582 TCAAAGTTATACCATGATGACTCTGAATCCGATT---CGACGAA--TGCAGGCAAAGCCA 377636 Query 23025 TCGAGGCAAGATTGCATACGGCCACCTCGTCTTTGGACGTGTACTCTACAATTTCG--GT 23082 || || || || || ||||| || || ||| || | || || |||||||| | Sbjct 377637 CGGAAGCTAGGTTACAGACGGCAACTTCTTCTGGTGAGGAATATTCAACAATTTCACAGC 377696 Query 23083 ACATAGATTGCTACACTTTATCGTGCCCAAATTGCTCTGGTTGCTTTTTCGATTGCACGA 23142 ||| || | | | |||| || || ||||| || | |||||| |||| ||| || | Sbjct 377697 ACA-AGTTAGATG-ACTTAATAGTACCCAAGTTCTTTTGGTTGGATTTTTCATTACAAGC 377754 Query 23143 ATCCTTGTAGAGCATGTACGGCGTGCCCGTCTCGACCTGCGACTCGATGATCGCTCGCCA 23202 ||||||||| | ||| | || ||||| || || || | || | || || ||| Sbjct 377755 ATCCTTGTATAACATAAATGGAGTGCCTGTTTCCGTTTGTGCTTCTAAAATAGCATACCA 377814 Query 23203 CATAGTCTGAGCGTGAACACGTCGCACGTACCT--GCCTTCTTCCTCGTACTTTTGGTAC 23260 | | ||||| | ||| | | ||||| ||||||||| || || ||||||| Sbjct 377815 TAGCTTTTGAGCCTTGACAGTTTGTC--TACCTCTGCCTTCTTCTTCATA--TTTGGTAT 377870 Query 23261 A--ACGCGTCAAATTCGGCACCGTAACAGTCGGCCAGGCCGGGCGATT--GCATCGGACA 23316 | | || |||||||| |||||||| ||| | || || | || | | ||| | Sbjct 377871 ATAAAGCTTCAAATTCATCACCGTAAAGTTCGTGTAAACCAGGGGCTTCGGAAGGGGAGA 377930 Query 23317 CATGAGACTCCACATTGAGTCATTTT---CAACGCGTCTCATAAAAAGATCCGGTATCCA 23373 || | | |||| ||||| |||| | |||| | ||||||| | ||| || ||||| Sbjct 377931 -ATAA-AGTCCA--TTGAG-CATTCTGCTCAACTCTCTTCATAAACAAATCTGGAATCCA 377985 Query 23374 TAGAGCGTAGAACAGTTCGCGGGCGCGCACCTCCTCTTTGCCGGTGTTCTTTTTCAAATC 23433 || || ||| || || | || | | ||| || || ||| |||||| | | ||| Sbjct 377986 TAAGGCCGGGAATAGATCTCTAGCTCTGATCTCTTCCTTACCGTGATTCTTTCTAATATC 378045 Query 23434 CAAAAAGTCCAACACGTCCGCATGCCACGGCTCGAGGTAAACGGCAAACGCGCCCGGTCT 23493 | || || || | || | |||||| || || | ||| | || || || || ||||| Sbjct 378046 GATGAAATCAAAGATATCAGAATGCCATGGTTCAATGTATAAAGCGAAAGCACCTGGTCT 378105 Query 23494 CTTATTGCCGCCCTGATCGACGTAACGGGCCGTGTTGTTGTACACTCTTAGCATCGGCAC 23553 || || || ||||| || || || | || ||||||||| | ||||| | ||| || | Sbjct 378106 TTTGTTACCCCCCTGGTCAACATATCTTGCAGTGTTGTTGAAAACTCTAATCATTGGAAT 378165 Query 23554 GAGACCGTTGGACGCGCCGCCTACGCCCGCCACACTCGAACCTTTTGCTCGAACGTTGTG 23613 || |||||| || | || || || | | ||||| | | || || ||| || Sbjct 378166 GATACCGTTAGAAGTACCATTAGTACCGGCAATATATGAACCAGTAGATCTAATGTTATG 378225 Query 23614 AACGTGGAAACCTATGCCTCCGCCCGATTTCGATATCATCGCGCATTGTTTCAGAGTGTC 23673 || ||| ||||| || || || | | || || |||| || ||||| |||| ||| || Sbjct 378226 AATGTGTAAACCAATACCACCAGCAGTCTTGGAAATCAAAGCACATTGCTTCAAAGTATC 378285 Query 23674 GTAGATGCCCTCGATGCTGTCCTCTTTGGTCGCGACCAAGAAACACGAAGACATTTGCGC 23733 || || || ||||| || ||||| | || || || || || ||||||||||| || Sbjct 378286 ATAAATACCATCGATAGAATCGTCTTTCATAGCAACTAAAAAGCATGAAGACATTTGTGC 378345 Query 23734 TTTGGGCGTAGCGGCCGAGAACAGTGTCGGGCTGGCGTGCGTAAAGTATCCATTCGACAT 23793 | || ||| | || || | ||| || ||||| |||||||||| | ||||| Sbjct 378346 GTGAGGAGTACCAGCATTAAATAATGTTGGTGAAGCGTGAGTAAAGTATCTTTCTGACAT 378405 Query 23794 -TAGATTGTACGTGTCGATGGCGGCATCAATGTCCTCTCCGTGTATACCGATGGCGACGC 23852 ||| || || || || ||| | | |||| | || ||||| ||||| || | || | Sbjct 378406 GTAG-TTATAAGTTTCTATGACCTTAGCAATATTATCACCGTGGATACCAATAGAAACTC 378464 Query 23853 GCATCATCATGTATTGAGGTCTCTCGACCGTGACGCCGTTAATTTTGAACAGATATGAAC 23912 ||| | | || || ||||| || | | ||||||||| | || | |||||| | Sbjct 378465 TCATAACTAAGTGCTGTGGTCTTTCAGCAACAGCACCGTTAATTCTCAATAAATATGATC 378524 Query 23913 GTTGCATCGTTTTAAATCCAAAATAGTCATAGTTAAAGTCACGATCGTGCACTATGGCCG 23972 | || || ||||| || ||||||| ||| || ||||| |||| || || || | Sbjct 378525 TCTCCAAAGTCTTAAAACCGAAATAGTTGTAGGAGAAATCACGGTCGTAAACAATAGCAG 378584 Query 23973 AATTCAA 23979 ||||||| Sbjct 378585 AATTCAA 378591 Score = 179 bits (198), Expect = 3e-40 Identities = 582/892 (65%), Gaps = 25/892 (3%) Strand=Plus/Plus Query 57537 AGATTTGTCATGTTTCCGATTGAATATCCAGACATTTGGAACATGTACAAAAAGGCAGAA 57596 |||||||| |||| || ||| |||| | || || ||| | |||||||| ||||| ||| Sbjct 647127 AGATTTGTTTTGTTCCCAATTAAATACCATGAAATCTGGCAAATGTACAAGAAGGCTGAA 647186 Query 57597 GCATCGTTTTGGACCGTCGAAGAAGTAGACCTGTCTAAGGAT-CTGAGCGATTGGGATTC 57655 || || || ||||| | |||||| | || | || |||||| || | || ||| | Sbjct 647187 GCTTCTTTCTGGACTGCAGAAGAAATTGATTTATCAAAGGATACTCAT-GACTGGAACAA 647245 Query 57656 CC---TCAAAGAATCTGAGAGAAATTTTATTAAACACGTGTTGGCGTTTTTCGCCGCATC 57712 | | || ||| || ||| ||| ||| | || || || || || || || || Sbjct 647246 CAGATTAAATGAAAGCGAAAGATTTTTCATTTCAAGAGTTTTAGCTTTCTTTGCAGCCTC 647305 Query 57713 CGATGGTATTGTTAACGAGAATTTGGTCGAAAGATTTTCACAAGAAGTGCAAGTGACGGA 57772 ||| ||||||||||||||||| ||||| |||| ||||| ||||| ||| | | || Sbjct 647306 CGACGGTATTGTTAACGAGAACTTGGTTGAAAACTTTTCTGCCGAAGTCCAAATTCCAGA 647365 Query 57773 GGCGAGATGCTTTTACGGATTTCAAGTGGCCATTGAAAACGTGCATTCAGAAATGTATTC 57832 || | || || ||||| || || | || |||||| | || || |||| || || Sbjct 647366 AGCCAAGTGTTTCTACGGTTTCCAGATCATGATGGAAAACATCCACTCTGAAACTTACTC 647425 Query 57833 GCTACTCATCGATACGTACGTGAAGGA--CAACGACGAGAAACGTAGACTG----TTCAA 57886 || | ||||| || || || ||||| ||| | ||| | |||| ||||| Sbjct 647426 ATTATTGATCGACACCTATGTTAAGGATCCAAAG--GAG----GCTGACTTCTTATTCAA 647479 Query 57887 CGCGATCGAAACAATGCCCGCGATCGCCAAGAAGGCAGAGTGGTCAATCAAATGGATAAA 57946 || || || || || || ||| | ||||| || ||| | || | |||||| || Sbjct 647480 TGCTATTGAGACTATTCCTTGCATCAAGGAAAAGGCTGACTGGGCCATGAGATGGATGAA 647539 Query 57947 AAGCGCCACGGCCACGTTCGCCGAGAGGCTAATCGCGTTCGCCGCCGTCGAAGGTATATT 58006 | || | | | |||||||| || || | || || || || ||||||||||| || Sbjct 647540 CAACGAAAATGGCTTATTCGCCGAAAGATTAGTTGCCTTTGCTGCTGTCGAAGGTATCTT 647599 Query 58007 CTTTTCGGGCAGCTTTGCGGCAATATTTTGGATGAAGAAACGCGGCCTGATGCCCGGCCT 58066 ||| || || ||||| | || |||||| |||| || | ||||| ||||| ||| | Sbjct 647600 CTTCTCTGGTTCATTTGCTTCTATCTTTTGGTTGAAAAAGAGAGGCCTAATGCCGGGCTT 647659 Query 58067 GACGTTTAGCAACGAGTTGATATCGCGCGACGAGGGTCTCCATACTGATTTTGCGTGCCT 58126 || || || || ||||| | | || || ||| | || ||||||||||| || | Sbjct 647660 AACTTTCTCTAATGAATTGATTTGTAGAGATGAAGGTTTACACACTGATTTTGCTTGTTT 647719 Query 58127 AATGTACTCTCACATTGTCAATAAACCGACGCGGGATCGCATCTTGGACATTATCACCGA 58186 | | | ||||||||| ||| | || | || | | | ||||| || || Sbjct 647720 ATTATTCTCTCACATGAACAACACTCCAAATGAAGAAATTGTTGTCAAGATTATTACTGA 647779 Query 58187 GGCGGTCGCGATCGAAAATGAG-TTTGTCACCGAAGCCCTACCGGTGGCCATGCTCGGTA 58245 || || | || ||||| ||| | |||| || ||| |||| || | | |||| Sbjct 647780 AGCAGTTGACATTGAAAA-GAGATACTTCACGGATGCCTTACCATGTGCATTATTGGGTA 647838 Query 58246 TGAACAATGATTTGATGTCAAAGTACATTGAGTTTGTTGCCGACAGACTTTTGCTCGAAC 58305 ||||| || ||||||| | ||| ||||||||||||| || ||| | || | | | Sbjct 647839 TGAACGCAGAATTGATGTGCCAATACGTTGAGTTTGTTGCTGATAGATTATTATT--ATC 647896 Query 58306 T---GATTGGAGAGCGTCATTACAACACGAAAAATCCGTTTGATTTTATGAATCTGATCT 58362 | | ||| | || || ||||| || || || || || |||||| | || | Sbjct 647897 TTTAGGTTGCA-AGAAGCACTACAAGGTTAACAACCCATTCGACTTTATGGAAAATATTT 647955 Query 58363 CGCTCGAGGGCAAGACAAACTTTTTCGaaaaaaaaGTTAGCGAATATCAAAA 58414 | | | || ||||| ||||| || ||||| | ||| ||| || ||||| Sbjct 647956 CTTTAGCTGGTAAGACCAACTTCTTTGAAAAGAGAGTGTCCGACTACCAAAA 648007 >seq9 Length=470967 Score = 84.2 bits (92), Expect = 2e-11 Identities = 115/161 (71%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 31188 CAAACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAAC 31247 ||||||||||||||||||| || ||| | || || || || |||||| | || |||||| Sbjct 292514 CAAACATGCAAATTTTCGTTAAAACTTTAACTGGTAAGACCATCACCTTAGAGGTTGAAT 292455 Query 31248 CGTCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCG 31307 | ||||| | | | || | || || || ||| || |||||||| | || || | Sbjct 292454 CTTCCGATACTATTGATAATGTGAAGTCGAAAATCCAAGATAAGGAAGGTATTCCACCTG 292395 Query 31308 ACCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGAC 31348 | || || | |||| || ||||| ||||| || |||||| Sbjct 292394 ATCAACAAAGATTAATCTTTGCTGGTAAACAATTAGAAGAC 292354 >seq2 Length=3419278 Score = 84.2 bits (92), Expect = 2e-11 Identities = 160/233 (69%), Gaps = 2/233 (1%) Strand=Plus/Minus Query 31190 AACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCG 31249 || |||||||||||||| || || | || || || || ||||| | || || ||| | Sbjct 1617321 AAGATGCAAATTTTCGTTAAAACCTTAACTGGTAAGACCATCACTTTAGAGGTCGAATCA 1617262 Query 31250 TCCGACAGTGTCGA-AACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGA 31308 ||||||| | | || |||| | | || || || || |||||||| | || || || Sbjct 1617261 TCCGACACTATTGACAACGTTAAGTCAAAG-ATCCAAGATAAGGAAGGTATCCCACCTGA 1617203 Query 31309 CCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTA 31368 || ||| | |||| || ||||| || || || ||||| || ||| | ||| || Sbjct 1617202 TCAACAGAGATTAATCTTTGCTGGTAAGCAATTAGAAGATGGTAGAACTTTATCCGACTA 1617143 Query 31369 TAACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 ||||| ||||| ||||| ||| | || |||| | ||| | || || |||| Sbjct 1617142 CAACATCCAAAAGGAATCAACTTTACACTTGGTCTTGAGATTAAGAGGTGGTA 1617090 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445766221693440