Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ogataea_20methanolica_20[genbank_20GCA_5F001600755.1_202016-03-01] 32 sequences; 15,086,366 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq5 403 2e-107 seq1 100 4e-16 >seq5 Length=1013952 Score = 403 bits (446), Expect = 2e-107 Identities = 1443/2223 (65%), Gaps = 83/2223 (4%) Strand=Plus/Plus Query 64839 GTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGA 64898 ||||||||||| | ||| || || | || || | || |||||||| || || || | | Sbjct 376721 GTGAATTGAATAGCAGCAGAAGCAGCTTGTGTTCTTAAGTAGTACATACCAGTCTTCAAA 376780 Query 64899 CCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGA-ATAACTCGGATCTGCTAT 64957 || |||| ||||| || ||||| ||||| || ||| | || ||| || Sbjct 376781 CCCTTCTTCCAACCGTAGAAGTGCATGGACGTTAACTTACCCATAGTTGGGTTCTT-TAA 376839 Query 64958 ATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTAT 65017 || || ||||| |||||| |||||| ||| | || || || || |||||||| | || Sbjct 376840 GTGAATGTTCATTGATTGAGATTGATCAATGTAAGCACCTCTATCAGCAGCCATATCAAT 376899 Query 65018 GATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAAG 65077 || ||||||||| ||||||||| | || || || | | ||| | || ||||||| Sbjct 376900 AATGCTCTTTTGTGAAATTTCCCAGACTGTCTTGTATAATTTCTTTAATTCGTCTGGAAT 376959 Query 65078 GTTTG-TA--TTCTGAATGGATCCACCATCTGCCATAATCCTATTCTTGATCTCATCATT 65134 ||| | || || ||||| || ||| |||| || || |||||| || |||| | Sbjct 376960 GTTCGGTAAGTTTTGAATAGAGCCATTATCTTGAATGATGAAATTCTTCATAGCATCGCT 377019 Query 65135 CCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCC 65194 ||||| | || |||| |||| || | || || || || | ||| ||||| || Sbjct 377020 CCATAGACCTAAATCAACTAAATCTCTTAGCAAATATGGGTTGACAATTTGGAATTCACC 377079 Query 65195 AGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACAGACTCATTATTTCC 65254 | | ||||| | | |||||| ||| || || ||||| | |||| || | || Sbjct 377080 TGCTAGAACTCTTCTTGAGTAAATGTTAGAAGTGTATGGTTCGAAGCACTCGTTGTAACC 377139 Query 65255 CAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTATTTCTAAGACC 65314 ||||||||| | |||||| ||||| ||||| || |||| ||||||| ||||| | ||| Sbjct 377140 CAAAATTTGTGAAGTTGAAGCAGTAGGCATTGGAGCCAGCAATAAAGAGTTTCTCAAACC 377199 Query 65315 GTATGTTCTGATTTTATCTTTTAGAGGTTCCCAATTCCAAAGATCCGACGG--TACAACN 65372 || | ||| | || |||| | ||||||| ||| | ||| | || | || Sbjct 377200 GTGCTTGGAAATTCTTTCCTTTAATAGATCCCAATCCCATAAATCAGTTGGCTTCTTACC 377259 Query 65373 NNNNNNNNNNNNNNTTGTAGAATACCGTTA----CTGGCGTACGATCCTACATATGTATC 65428 ||||| | ||| | | |||| | || | | | || | || Sbjct 377260 CCATAAGTCGAA--TTGTAATAGACCTTGAGAAGCTGGAGAAC---CTTGGAAAT-TCTC 377313 Query 65429 GTATGGTCCTTCCTTCTCAGCTAGTTCACAACTC-------GCCTCTAATGCACCGTAAT 65481 ||||| || || | || | | |||| || || ||||| ||| | | | Sbjct 377314 ATATGGCCCATC----TAAGATTG---ACAATTCAATCGAAGCTTCTAAAGCAGCATGGT 377366 Query 65482 AAATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCAAATGGATAAT 65541 | |||||||| || || | | || | || || || || ||||||||| |||| Sbjct 377367 ACATGGTTTCAAAAATTTGAATGTTCAAGTCCCTGGCCTCTGGGGAATCAAATGG-TAAT 377425 Query 65542 TT-AAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTC 65600 | || | || || |||| || || ||||||||||||| | | || ||||| | | || Sbjct 377426 CTCAATTGCATGAAAACGTCAGCCAAACCTTGAACACCAACAGCAATTGGTCTGTTTTTC 377485 Query 65601 TTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGA 65660 | ||||| || ||| ||| || ||| ||||| || | || || || | || | | Sbjct 377486 ATGTTAGATGTTCTAGCCTCTTCAACAGGGTAATAGTTTCTGTCAATGATCATGTTCA-A 377544 Query 65661 TTTCTGA-CAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAATCG------CTC 65713 |||| | ||| || || || || | |||||| ||| | | | | ||| Sbjct 377545 GTTCTTAGCAACAACCTTAGTAACTTCATGCAGTTTTTCAAAGTTATACCATGATGACTC 377604 Query 65714 ---ATCT-ATT--ACAAA--CATGTTCAATGCAACAGATGCCAGATTACAAACGGCTACC 65765 ||| ||| || || || | ||| || || || || || ||||| ||||| || Sbjct 377605 TGAATCCGATTCGACGAATGCAGG--CAAAGCCACGGAAGCTAGGTTACAGACGGCAACT 377662 Query 65766 TCATTAGCATCCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATGGTTCCT 65825 || | | | ||||| | || ||| ||| | ||| |||| || || || Sbjct 377663 TCTTCTGGTGAGGAATATTCAACAATTTCACAGCACAAGTTAGATGACTTAATAGTACCC 377722 Query 65826 AAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCA 65885 || || | ||| || |||| ||||| |||||||| || | || |||||||| || Sbjct 377723 AAGTTCTTTTGGTTGGATTTTTCATTACAAGCATCCTTGTATAACATAAATGGAGTGCCT 377782 Query 65886 GTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGACTCGAGCCTTTATTATAGATT-T 65944 ||||| | || | ||||| ||| || | ||| | | ||||||| | || || | Sbjct 377783 GTTTCCGTTTGTGCTTCTAAAATAGCATACCATAGCTTTTGAGCCTTGAC---AGTTTGT 377839 Query 65945 GTATCTCTT--TTCTCTTTCGTATAGTGTATACAATCGTTCGAACTCGTCTCCCCAAACA 66002 || |||| |||| ||| ||| ||||| || ||| || || || || ||| Sbjct 377840 CTACCTCTGCCTTCTTCTTCATATTTGGTATATAAAGCTTCAAATTCATCACCGTAAAGT 377899 Query 66003 TTGTCCAATCCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACT 66062 | || || ||||| ||| || | | || | ||| | | | | || ||| Sbjct 377900 TCGTGTAAACCAGGGGCTTCGGAAGGGGAGAATAAAGTCCATTGAGCATTCTGCTCAACT 377959 Query 66063 CGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAAATCTCTGGTTCTATGTTCC 66122 | |||||||| | ||| |||||||| | || |||| |||||| | ||| || Sbjct 377960 CTCTTCATAAACAAATCTGGAATCCATAAGGCCGGGAATAGATCTCTAGCTCTGATCTCT 378019 Query 66123 TCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCATAATGCCACGGTTCC 66182 || || || ||||||| ||| ||||| ||| | | |||||| ||||||| ||||| Sbjct 378020 TCCTTACCGTGATTCTTTCTAATATCGATGAAATCAAAGATATCAGAATGCCATGGTTCA 378079 Query 66183 AAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTG 66242 | ||||| || | | | || || | |||||| || ||||| || | ||||| || ||| Sbjct 378080 ATGTATAAAGCGAAAGCACCTGGTCTTTTGTTACCCCCCTGGTCAACATATCTTGCAGTG 378139 Query 66243 TTATTATAAACTCTCAACATTGGAATAATACCATTGGATGTACCATTGGTCCCGGAGATA 66302 || || ||||||| | ||||||||| ||||| || || |||||||| || |||| ||| Sbjct 378140 TTGTTGAAAACTCTAATCATTGGAATGATACCGTTAGAAGTACCATTAGTACCGGCAATA 378199 Query 66303 TAGCTTCCACTTGCACGAATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAG 66362 || ||| | | | ||| ||| ||| || ||| || || || || | || || Sbjct 378200 TATGAACCAGTAGATCTAATGTTATGAATGTGTAAACCAATACCACCAGCAGTCTTGGAA 378259 Query 66363 ATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTA 66422 || || || ||| | || || |||||||| || || || ||| ||| || |||| | Sbjct 378260 ATCAAAGCACATTGCTTCAAAGTATCATAAATACCATCGATAGAATCGTCTTTCATAGCA 378319 Query 66423 AGTAGAAAACAGCTAGACATTTG---GTGACGACTAGTTCCCGCATTAAATAAGGTAGGA 66479 | || ||| || ||||||||| |||| || || || ||||||||||| || || Sbjct 378320 ACTAAAAAGCATGAAGACATTTGTGCGTGAGGAGTA---CCAGCATTAAATAATGTTGGT 378376 Query 66480 GAAGCGTGCGTAAACCATTTTTCAGA-AAGTAGATTGTACGTCTCAAT-AGCTGAGTCTA 66537 |||||||| ||||| || |||| || | |||| || || || || || | || || | | Sbjct 378377 GAAGCGTGAGTAAAGTATCTTTCTGACATGTAG-TTATAAGTTTCTATGACCTTAG-CAA 378434 Query 66538 TA-TCCCATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACG 66596 || | || | || || || | | || | ||| | | |||||| ||||||||| | Sbjct 378435 TATTATCACCG-TGGATACCAATAGAAACTCTCATAACTAAGTGCTGTGGTCTTTCAGCA 378493 Query 66597 ATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTG 66656 | ||| ||| |||| || || ||| | |||||||| |||||||| ||||||||| Sbjct 378494 ACAGCACCGTTAATTCTCAATAAATATGATCTCTCCAAAGTCTTAAAACCGAAATAGTTG 378553 Query 66657 TATGAAAAGTCTCGTTCGTAAATAATAACCGAGTTGAGTTTATCCTTATATTTGTTAACT 66716 || || || || || ||||||| |||| | || || | || ||| ||| || | ||| Sbjct 378554 TAGGAGAAATCACGGTCGTAAACAATAGCAGAATTCAATTCATCACTATGCTTTTGAACG 378613 Query 66717 ACATCCATGGTAA---TACTT-GAAATAATCGGAGAATGTTTCCCATTTTTAGGATTGAC 66772 | || |||| | ||| || || || |||| | | ||||| || || |||| Sbjct 378614 ATGTC----GTAAACTTCCTTAGAGATCATTGGAGCCGGCTGACCATTCTTTGGGTTGAT 378669 Query 66773 ATAGTTGAATAAATCCTCCATCACTTCACTAAATAGtttttttGTTTCTTTGTGTAGATT 66832 ||| | |||| | || || ||| | |||| |||| |||| | ||||||| || Sbjct 378670 ATAAGTATATAATTGTTCAATAACTGAAGAAAATTGTTTGGTTGTCTGCTTGTGTAAGTT 378729 Query 66833 TGATACGGCTATTCTAGCGGCTATAATGGCATAATCCGGATG-TTG--TGTAGTACAAGT 66889 || | |||||||| || |||| |||||||||| || || || ||| || || Sbjct 378730 AGAAATAGCTATTCTGGCAGCTAAGGTGGCATAATCTGGGTGAATGGTTGTCATATAA-- 378787 Query 66890 GGCTGCTATTTCGGCTGCCAGAGTGTCCAATTCTACCGTTGTTACTCCATTATATATTCC 66949 || || |||| || |||| | |||||||| | || || || || ||||| | || Sbjct 378788 -GCAGCAGTTTCAGCAGCCAAGTTATCCAATTCGATAGTGGTAACACCGTTATAAACACC 378846 Query 66950 TTGGATAACCTTCATAGCTATTTTAATAGGATCTATATGATCAGTGTTTAAGCCATAACA 67009 ||||| | || ||| || || ||| | ||| | | || ||| || ||||| Sbjct 378847 AGAAATAACACGCTGAGTAATTGCAACAGCATCCACATGTTTTGGGTCTAAACCGTAACA 378906 Query 67010 TAA 67012 ||| Sbjct 378907 TAA 378909 Score = 286 bits (316), Expect = 5e-72 Identities = 624/920 (68%), Gaps = 21/920 (2%) Strand=Plus/Minus Query 35846 TCTTGAGACATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTT 35905 ||||| | |||||| || |||||||| || ||| | ||||| || || || || Sbjct 648027 TCTTG-GCCATAACACCAGCCTTTTGGTAGTCGGACACTCTCTTTTCAAAGAAGTTGGTC 647969 Query 35906 TTACCTTCTAATGATATATTTTCCATGAAATCGAATGGATTGATAACATTATAAAttttt 35965 ||||| |||| || ||||||||||| || |||||||| ||| |||| || || || Sbjct 647968 TTACCAGCTAAAGAAATATTTTCCATAAAGTCGAATGGGTTGTTAACCTTGTAGTGCTTC 647909 Query 35966 ttAAATCCCAATTCAGA-AATCA--ATCTATCTGCGACAAATTCTATATATGTTTTCATC 36022 || | || || ||| ||| | ||||||| || ||||| || | ||| |||| Sbjct 647908 TTGCAACCTAA---AGATAATAATAATCTATCAGCAACAAACTCAACGTATTGGCACATC 647852 Query 36023 ATTTCACAATTCATTCCTATAAGTTTAACTGGAAGAGCCACAGT-AAGAAATTCTTGTTC 36081 | ||| ||||| || | | | | ||| | || | || ||| | |||| ||| Sbjct 647851 AATTCTGCGTTCATACCCAATAATGCACATGGTAAGGCATCCGTGAAGTATCTCTT-TTC 647793 Query 36082 AATAGAGACCGCGTCTGTTATAATAGATATTACTGTTTCTTCACTCGGTGGATACAATAA 36141 ||| || || || || ||||| | || |||||||| | || | | | Sbjct 647792 AATGTCAACTGCTTCAGTAATAATCTTGACAACAATTTCTTCATTTGGAGTGTTGTTCAT 647733 Query 36142 ATGTTTAAACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTC 36201 || || | ||||| || ||||| ||||| ||| || ||||||| ||| ||||| Sbjct 647732 GTGAGAGAATAATAAACAAGCAAAATCAGTGTGTAAACCTTCATCTCTACAAATCAATTC 647673 Query 36202 GTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAA 36261 || || || || | || ||||||||||| | |||||| | |||||| || || ||||| Sbjct 647672 ATTAGAGAAAGTTAAGCCCGGCATTAGGCCTCTCTTTTTCAACCAAAAGATAGAAGCAAA 647613 Query 36262 TGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCC--ATAA 36319 ||| ||||| ||||| || ||||| || || |||||||||| | ||| || | |||| Sbjct 647612 TGAACCAGAGAAGAAGATACCTTCGACAGCAGCAAAGGCAACTAATCTTTCGGCGAATAA 647553 Query 36320 CCGGCACTGTC-ATGT--ATCCA-CTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGG 36375 | || | || ||| ||||| || || ||||| || ||||| | || | ||||| Sbjct 647552 --GCCATTTTCGTTGTTCATCCATCTCATG-GCCCAGTCAGCCTTTTCCTTGATGCAAGG 647496 Query 36376 CATTGTCTCTATAGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATC 36435 || ||||| |||||||| || | ||| || || ||| |||||||| || || Sbjct 647495 AATAGTCTCAATAGCATTGAATAAGAAGTCAGCCTCCTTTGGATCCTTAACATAGGTGTC 647436 Query 36436 AATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAA 36495 ||||| | || |||| || || |||||||| || || || || |||||||| Sbjct 647435 GATCAATAATGAGTAAGTTTCAGAGTGGATGTTTTCCATCATGATCTGGAAACCGTAGAA 647376 Query 36496 ACATCTAGCCTCGGTAATCTGTACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCAC 36555 ||| | || || | ||| || ||||| | | |||| ||| | || || || || || Sbjct 647375 ACACTTGGCTTCTGGAATTTGGACTTCGGCAGAAAAGTTTTCAACCAAGTTCTCGTTAAC 647316 Query 36556 TATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTTTGG 36615 || ||||| ||||||||| || || || || | || ||| || ||||| || Sbjct 647315 AATACCGTCGGAGGCTGCAAAGAAAGCTAAAACTCTTGAAATGAAAAATCTTTCGCTTTC 647256 Query 36616 TGTTAGT---TTATTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCA 36672 ||| | || ||||| |||| |||| || |||| ||| | |||||| | ||||| Sbjct 647255 ATTTAATCTGTTGTTCCAGTCATGAGTATCCTTTGATAAATCAATTTCTTCTGCAGTCCA 647196 Query 36673 AAATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCATGATATTGAATTGGAAAAAT 36732 || || || || ||||| || ||||| | |||||| ||||| |||| |||||| || | Sbjct 647195 GAAAGAAGCTTCAGCCTTCTTGTACATTTGCCAGATTTCATGGTATTTAATTGGGAACAA 647136 Query 36733 AACAAATCTATTTTGATTTT 36752 ||||||||| |||| |||| Sbjct 647135 AACAAATCTTTTTTTGTTTT 647116 >seq1 Length=3681944 Score = 100 bits (110), Expect = 4e-16 Identities = 320/487 (66%), Gaps = 11/487 (2%) Strand=Plus/Plus Query 64874 TAGATAGTACATTCCCGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAG 64933 || |||||| || || |||||||| || |||| | ||||| |||||||| || || Sbjct 1059276 TAAATAGTAAATACCAGTTTTTAGTCCTTTCTTCCAAGCATAAAAGTGCATACTTGTAAG 1059335 Query 64934 TTTGGAATAACTCGGATCTGCTATATGGATA--TTCATAGATTGACTTTGATCGATGAAG 64991 || || | || || || ||| ||| || | |||||| ||||| ||||| Sbjct 1059336 CTTCGACATTGTTGGTTCC-CTC-ATGAATAAGTTTAATGATTGAGAATGATCAATGAAT 1059393 Query 64992 GCTCCCCTGTCTGCAGCCATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTA 65051 | | | | ||| || | ||| | || | |||||| ||||||||||||| |||||| Sbjct 1059394 GGTGCACGGTCAGCTGACATATCAATTAAATGCTTTTGAGGAATTTCCCAAACTGTTTTA 1059453 Query 65052 TAAACTCGCTTAATATCTTCTGGAAGGTTTGTATTC---TGAATGGATCCACCATCTGC- 65107 || | ||||||||| | ||| | | || || ||||| || || | ||| Sbjct 1059454 TACAAAGACTTAATATCATTTGGTATTTCATTAATCAATTGAATTGACCCGTTGT-TGCT 1059512 Query 65108 CATAATCCTATTCTTGATCTCATCATTCCATAATTTTCTCTCGGTTAAAAC-TCTAAGGA 65166 || ||| ||||||||| | |||||||||| || ||| ||||| | ||| | | Sbjct 1059513 TATTATCTGATTCTTGATATTCTCATTCCATAGATTGAGTTCGATTAAATCGTCT-ACCA 1059571 Query 65167 GATGCGGATTAACTACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGG 65226 || |||||| | |||||| || || || || ||||| | |||||||||||| | Sbjct 1059572 AATAGCTATTAACGATTTGAAACTCACCGGATAAGACTCTTCTTGTGTAAATATTAGATG 1059631 Query 65227 TATACGGTTCCACAGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAG 65286 | || || | | | ||| | ||| | || || | ||| || ||||| ||||| Sbjct 1059632 TGATTGGCTCAAAACATTCAGTGAATCCTAGTATCTGTGAAGTCGAGGCAGTAGGCATTA 1059691 Query 65287 GTGCCACCAATAAACTATTTCTAAGACCGTATGTTCTGATTTTATCTTTTAGAGGTTCCC 65346 || ||||| || ||||| | ||||| | | | ||||| |||| | | |||| Sbjct 1059692 AGGCAACCAACAACGAGTTTCTGACACCGTTCGATTTTATTTTCGCTTTCAATGAATCCC 1059751 Query 65347 AATTCCA 65353 ||| ||| Sbjct 1059752 AATCCCA 1059758 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658172536730880