Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ogataea_20methanolica_20[genbank_20GCA_5F001600755.1_202016-03-01] 32 sequences; 15,086,366 total letters Query= NC_004062.1 Length=119217 Score E Sequences producing significant alignments: (Bits) Value seq2 89.7 4e-13 seq1 87.8 1e-12 >seq2 Length=3419278 Score = 89.7 bits (98), Expect = 4e-13 Identities = 151/219 (69%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 42894 TCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGACAATGTACGTTC 42953 ||| || ||||| || | ||| |||||||| | ||||| ||||| || || | | Sbjct 1617103 TCTCAAGACCAAGTGTAAAGTTGATTCCTTTTGGATGTTGTAGTCGGATAAAGTTCTACC 1617162 Query 42954 GTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGCACACCTTCTTT 43013 || || ||||| || || ||||| || |||| ||||||||| | || | |||||| || Sbjct 1617163 ATCTTCTAATTGCTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGGATACCTTCCTT 1617222 Query 43014 TTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACGTCTACCGTTAT 43073 || |||| || || || ||| |||||| | ||||| |||| || || Sbjct 1617223 ATCTTGGATCTTTGACTTAACGTTGTCAATAGTGTCGGATGATTCGACCTCTAAAGTGAT 1617282 Query 43074 AGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCATTTT 43112 || || || |||| ||||| || ||||||||||| || Sbjct 1617283 GGTCTTACCAGTTAAGGTTTTAACGAAAATTTGCATCTT 1617321 >seq1 Length=3681944 Score = 87.8 bits (96), Expect = 1e-12 Identities = 150/218 (69%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 42894 TCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGACAATGTACGTTC 42953 |||||| || || || | ||| |||||||| | ||||| || || || || | | Sbjct 1219123 TCTTAAGACTAAGTGCAAGGTGGATTCCTTTTGAATGTTGTAGTCAGATAAGGTTCTACC 1219182 Query 42954 GTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGCACACCTTCTTT 43013 || |||||||| || || ||||| || |||| |||||||| | || | |||||| || Sbjct 1219183 ATCTTCCAATTGCTTACCAGCAAAGATTAATCTTTGTTGATCAGGTGGAATACCTTCCTT 1219242 Query 43014 TTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACGTCTACCGTTAT 43073 || |||| ||||| || ||| ||||| | ||||| |||| || || Sbjct 1219243 GTCTTGGATCTTGGACTTGACATTGTCAATGGTGTCTGAGGATTCGACCTCTAAAGTGAT 1219302 Query 43074 AGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCATTT 43111 || || || |||| ||||| || ||||||||||||| Sbjct 1219303 GGTCTTACCAGTTAAGGTTTTAACGAAAATTTGCATTT 1219340 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 381369451265856