Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ogataea_20methanolica_20[genbank_20GCA_5F001600755.1_202016-03-01] 32 sequences; 15,086,366 total letters Query= NC_004690.1 Length=113220 Score E Sequences producing significant alignments: (Bits) Value seq1 131 1e-25 seq9 114 9e-21 seq2 104 2e-17 >seq1 Length=3681944 Score = 131 bits (144), Expect = 1e-25 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 |||||||| |||||||| ||||| || | |||||| || ||||| |||||||| || | Sbjct 1219112 CCACCTCTTAATCTTAAGACTAAGTGCAAGGTGGATTCCTTTTGAATGTTGTAGTCAGAT 1219171 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 | |||| | ||||| ||||| || ||||| | || || | |||||| || |||| Sbjct 1219172 AAGGTTCTACCATCTTCCAATTGCTTACCAGCAAAGATTAATCTTTGTTGATCAGGTGGA 1219231 Query 15257 ATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACA 15316 || ||||| ||||| || ||| ||| ||| | || ||||| || ||| || Sbjct 1219232 ATACCTTCCTTGTCTTGGATCTTGGACTTGACATTGTCAATGGTGTCTGAGGATTCGACC 1219291 Query 15317 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 ||||| || ||||| ||||| || | ||||| || ||||||||||| Sbjct 1219292 TCTAAAGTGATGGTCTTACCAGTTAAGGTTTTAACGAAAATTTGCAT 1219338 >seq9 Length=470967 Score = 114 bits (126), Expect = 9e-21 Identities = 126/168 (75%), Gaps = 0/168 (0%) Strand=Plus/Plus Query 15201 TTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTC 15260 |||| |||||||||||||||| ||||| | || || | |||||| || |||||| | Sbjct 292347 TTCTACCGTCTTCTAATTGTTTACCAGCAAAGATTAATCTTTGTTGATCAGGTGGAATAC 292406 Query 15261 CTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTA 15320 |||| || || ||||| ||| ||| | || || |||||| | ||| || |||| Sbjct 292407 CTTCCTTATCTTGGATTTTCGACTTCACATTATCAATAGTATCGGAAGATTCAACCTCTA 292466 Query 15321 AGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATATTTG 15368 |||| ||||| ||||| || | |||||| || ||||||||||| |||| Sbjct 292467 AGGTGATGGTCTTACCAGTTAAAGTTTTAACGAAAATTTGCATGTTTG 292514 Score = 82.4 bits (90), Expect = 6e-11 Identities = 74/93 (80%), Gaps = 0/93 (0%) Strand=Plus/Plus Query 15136 GCCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCT 15195 |||||| | |||||| ||||| || || | |||||| |||||||| || |||||||| Sbjct 291659 GCCACCACGCAATCTCAAAACCAAGTGTAAGGTGGACTCTTTTTGGATATTGTAATCTGA 291718 Query 15196 TAGAATTCTCGCGTCTTCTAATTGTTTGCCAGC 15228 || |||| |||||||||||||||| ||||| Sbjct 291719 TAATGTTCTACCGTCTTCTAATTGTTTACCAGC 291751 >seq2 Length=3419278 Score = 104 bits (114), Expect = 2e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 |||||||| ||||| || || || || | || || || ||||| |||||||| ||| | Sbjct 1617092 CCACCTCTTAATCTCAAGACCAAGTGTAAAGTTGATTCCTTTTGGATGTTGTAGTCGGAT 1617151 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 | | |||| | ||||||||||| || ||||| | || || | ||||| || ||| Sbjct 1617152 AAAGTTCTACCATCTTCTAATTGCTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGG 1617211 Query 15257 ATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACA 15316 || ||||| || || || || ||| || | || || || ||| ||| || Sbjct 1617212 ATACCTTCCTTATCTTGGATCTTTGACTTAACGTTGTCAATAGTGTCGGATGATTCGACC 1617271 Query 15317 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATATT 15366 ||||| || ||||| ||||| || | ||||| || ||||||||||| || Sbjct 1617272 TCTAAAGTGATGGTCTTACCAGTTAAGGTTTTAACGAAAATTTGCATCTT 1617321 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 362179058750112