Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ogataea_20methanolica_20[genbank_20GCA_5F001600755.1_202016-03-01] 32 sequences; 15,086,366 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq5 217 3e-51 seq2 161 2e-34 seq1 152 1e-31 seq9 138 3e-27 >seq5 Length=1013952 Score = 217 bits (240), Expect = 3e-51 Identities = 581/870 (67%), Gaps = 21/870 (2%) Strand=Plus/Plus Query 268700 AGATTTGTGATATTTCCAATACAGCATGGTGATATATGGAGGATGTACAAACAGGCCGTT 268759 |||||||| | || ||||| | | ||| || ||| |||||||| |||| | Sbjct 647127 AGATTTGTTTTGTTCCCAATTAAATACCATGAAATCTGGCAAATGTACAAGAAGGCTGAA 647186 Query 268760 GCTTCTTTTTGGACTGTAGAAGAAGTAGATCTGTCTTATGACT-TAATAGATTGGAAAAA 268818 |||||||| ||||||| ||||||| | ||| | || | || | || || ||||| || Sbjct 647187 GCTTCTTTCTGGACTGCAGAAGAAATTGATTTATCAAAGGATACTCAT-GACTGGAACAA 647245 Query 268819 T---TTAAAACCAGAAGAAAGAAGATTTATATCTTATATTCTTGCGTTTTTTGCAGTTAG 268875 ||||| | |||||| || || || || | || || ||||||| Sbjct 647246 CAGATTAAATGAAAGCGAAAGATTTTTCATTTCAAGAGTTTTAGCTTTCTTTGCAGCCTC 647305 Query 268876 TGATGGTATCGTTAACGAAAATCTAGTAGAGAAGTTCTGTCAAGAGGTACAGATTCCTGA 268935 || ||||| |||||||| || | || || || || | | || || || ||||| || Sbjct 647306 CGACGGTATTGTTAACGAGAACTTGGTTGAAAACTTTTCTGCCGAAGTCCAAATTCCAGA 647365 Query 268936 AGCCAGATGTTTTTACGGATTCCAGATAGCTATAGAAAATATTCATTCAGAGATGTACAG 268995 ||||| ||||| ||||| |||||||| || ||||| || || || || | ||| Sbjct 647366 AGCCAAGTGTTTCTACGGTTTCCAGATCATGATGGAAAACATCCACTCTGAAACTTACTC 647425 Query 268996 TCTATTAATAGATACTTATATAGATGATAACAACGAAAAGAAAAGACTATTTTCTTCTAT 269055 |||| || || || ||| | | ||| || || | |||| | |||| Sbjct 647426 ATTATTGATCGACACCTATGTTAAGGATCCAAAGGAGGCTGACTTCTTATTCAATGCTAT 647485 Query 269056 -GAGAACTATGGACTGTGTGAGaaaaaaaTCTGAATGGGCTCTGAAATGGATAAACGAT- 269113 |||| |||| || | | |||| |||| ||||| ||| |||||| ||| | Sbjct 647486 TGAGA-CTATTCCTTGCATCAAGGAAAAGGCTGACTGGGCCATGAGATGGATGAACAACG 647544 Query 269114 AGCGCGCCTTA--CGGAGAAAGGTTAGTTGCTTTTGCCGCTGTAGAAGGTATATTCTTTT 269171 | | |||| || ||||| |||||||| ||||| ||||| |||||||| ||||| | Sbjct 647545 AAAATGGCTTATTCGCCGAAAGATTAGTTGCCTTTGCTGCTGTCGAAGGTATCTTCTTCT 647604 Query 269172 CGGGGTCTTTTGCCGCTATCTTTTGGTTGAAGAAAAGAGGCCTTATGCCAGGATTAACTT 269231 | || || ||||| |||||||||||||||| || |||||||| ||||| || ||||||| Sbjct 647605 CTGGTTCATTTGCTTCTATCTTTTGGTTGAAAAAGAGAGGCCTAATGCCGGGCTTAACTT 647664 Query 269232 TCTCTAACGAATTGATAAGCAGGGACGAAGGTTTACACTGCGACTTCGCTTGTTTATTAT 269291 ||||||| |||||||| | || || |||||||||||| || || ||||||||||||| Sbjct 647665 TCTCTAATGAATTGATTTGTAGAGATGAAGGTTTACACACTGATTTTGCTTGTTTATTAT 647724 Query 269292 TTACTAATTATCTTTCAC-ACAAACCTTCTCAAGATAGAGTATACGAAATTATAGATTCA 269350 | || | | | || ||| || | |||| | || | | ||||| | | Sbjct 647725 TCTCTCA----CATGAACAACACTCCAAATGAAGAAATTGTTGTCAAGATTATTACTGAA 647780 Query 269351 GCTGTTTCTGTAGAAACAGA-ATTTCTAACGGAAGCTCTATC-TATCGATCTTATCGGTA 269408 || ||| | |||| ||| || | ||||| || || | | | || | | |||| Sbjct 647781 GCAGTTGACATTGAAA-AGAGATACTTCACGGATGCCTTACCATGTGCAT-TATTGGGTA 647838 Query 269409 TGAATAGCA-AATCGATGATAGAATATATTAAGTTCGTATCTGATAGATTGCTGGTGTCT 269467 |||| ||| ||| |||| |||| || |||| || |||||||||| | | ||| Sbjct 647839 TGAA-CGCAGAATTGATGTGCCAATACGTTGAGTTTGTTGCTGATAGATTATTATTATCT 647897 Query 269468 TTAGGGTTTAGTAAAAAATATAACGTTGAAAATCCGTTTAGTTTTATGGAGAATATATCA 269527 ||||| | | || | || || ||| | || || || |||||||| ||||| || Sbjct 647898 TTAGGTTGCAAGAAGCACTACAAGGTTAACAACCCATTCGACTTTATGGAAAATATTTCT 647957 Query 269528 TTAGAAGGTAAGGCTAATTTCTTCGAGAAG 269557 |||| |||||| | || ||||| || ||| Sbjct 647958 TTAGCTGGTAAGACCAACTTCTTTGAAAAG 647987 >seq2 Length=3419278 Score = 161 bits (178), Expect = 2e-34 Identities = 176/234 (75%), Gaps = 0/234 (0%) Strand=Plus/Plus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || ||||||| || | || | ||||| || ||||| || || || || ||||| Sbjct 1617089 ATACCACCTCTTAATCTCAAGACCAAGTGTAAAGTTGATTCCTTTTGGATGTTGTAGTCG 1617148 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 |||| ||||||||| ||||||| ||| || |||||||| |||| |||||||||||||| Sbjct 1617149 GATAAAGTTCTACCATCTTCTAATTGCTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 1617208 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || || ||||| ||||| || ||||||| || || || || | || ||| | ||| Sbjct 1617209 GGGATACCTTCCTTATCTTGGATCTTTGACTTAACGTTGTCAATAGTGTCGGATGATTCG 1617268 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATTTTG 104563 ||||||| || || ||||||||||| | ||||| || || || ||||| ||| Sbjct 1617269 ACCTCTAAAGTGATGGTCTTACCAGTTAAGGTTTTAACGAAAATTTGCATCTTG 1617322 Score = 84.2 bits (92), Expect = 5e-11 Identities = 123/172 (72%), Gaps = 4/172 (2%) Strand=Plus/Plus Query 165098 GATAAGGATGAATGGAATACTTGGAATAAAATACACGATCCTGTTTTACATATAGAGCTA 165157 ||||| || ||||||| |||||||| || | | |||||||||||||| || || | Sbjct 614257 GATAAAGACGAATGGACCACTTGGAACAATAGAACAGATCCTGTTTTACACATTGAATTG 614316 Query 165158 AGAAGATGGGCAGATATGATGTTGATAGCACCCTTAACAGCAA--ACAGTTTAGCGAAGA 165215 ||||| ||||||||| | || | || || || |||| |||| ||| ||| | || | Sbjct 614317 AGAAGGTGGGCAGATGTTTTGATCATTGCTCCATTAAGTGCAAATACACTTT--CCAAAA 614374 Query 165216 TAGCTAACGGTATCTGTAATAACTTGTTAACGTGTATAGTTAGAGCGTGGAA 165267 | ||| || | ||| |||| |||||||| | |||||||| ||||| Sbjct 614375 TTGCTTTAGGCTTATGTGATAATTTGTTAACAAACGTTGTTAGAGCTTGGAA 614426 >seq1 Length=3681944 Score = 152 bits (168), Expect = 1e-31 Identities = 175/234 (75%), Gaps = 1/234 (0%) Strand=Plus/Plus Query 104333 CCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGAT 104392 || ||||||| || | |||| || || || ||||| || ||||| || ||||||||| Sbjct 1219112 CCACCTCTTAATCTTAAGACTAAGTGCAAGGTGGATTCCTTTTGAATGTTGTAGTCAGAT 1219171 Query 104393 AGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGT 104452 | |||||||| ||||| | ||| || |||||||| |||| || ||||||||||| || Sbjct 1219172 AAGGTTCTACCATCTTCCAATTGCTTACCAGCAAAGATTAATCTTTGTTGATCAGGTGGA 1219231 Query 104453 ATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACC 104512 || ||||| || || || ||||| | || ||||| || | ||| || | ||| ||| Sbjct 1219232 ATACCTTCCTTGTCTTGGATCTTGGACTTGACATTGTCAATGGTGTCTGAGGATTCGACC 1219291 Query 104513 TCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATTT-TGTG 104565 |||| || || ||||||||||| | ||||| || || || ||||||| |||| Sbjct 1219292 TCTAAAGTGATGGTCTTACCAGTTAAGGTTTTAACGAAAATTTGCATTTCTGTG 1219345 >seq9 Length=470967 Score = 138 bits (152), Expect = 3e-27 Identities = 137/176 (78%), Gaps = 1/176 (1%) Strand=Plus/Plus Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 |||| |||||||||||||||| |||||| |||||||| |||| || ||||||||||| Sbjct 292340 GATAATGTTCTACCGTCTTCTAATTGTTTACCAGCAAAGATTAATCTTTGTTGATCAGGT 292399 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || || ||||| ||||| || || || | || ||||| || | |||||| || ||| Sbjct 292400 GGAATACCTTCCTTATCTTGGATTTTCGACTTCACATTATCAATAGTATCGGAAGATTCA 292459 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT-TTTGT 104564 ||||||| || || ||||||||||| | ||||| || || || ||||| ||||| Sbjct 292460 ACCTCTAAGGTGATGGTCTTACCAGTTAAAGTTTTAACGAAAATTTGCATGTTTGT 292515 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151397927926656