Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ogataea_20methanolica_20[genbank_20GCA_5F001600755.1_202016-03-01] 32 sequences; 15,086,366 total letters Query= NC_005902.1 Length=186250 Score E Sequences producing significant alignments: (Bits) Value seq1 176 5e-39 seq8 87.8 2e-12 >seq1 Length=3681944 Score = 176 bits (194), Expect = 5e-39 Identities = 395/588 (67%), Gaps = 24/588 (4%) Strand=Plus/Minus Query 164398 AATTTTGAAGAAATGGGAGTAGGTGGACTAGATCGAGAATTTTCTCTTATTTTCAGACGA 164457 || |||||||| |||||| | ||||| ||||| ||||||| || ||||||||| || Sbjct 2341291 AAATTTGAAGATATGGGAATTGGTGGGTTAGATAAAGAATTTACTTCCATTTTCAGAAGA 2341232 Query 164458 GCATTTGCTTCTAGATCAGTTCCTATCGAAATAATaaaaaaaTTAGGCTGTAAACATATA 164517 || ||||| |||||| | |||| | |||| | ||||||||| | | ||| | Sbjct 2341231 GCCTTTGCATCTAGAATATTTCCACCAGGGTTAATTGAGAAATTAGGCATTCAGCATGTC 2341172 Query 164518 AAAGGAATTTTATTACATGGACCTCCTGGTTGCGGTAAAACATTAATGGCTCGATGCATT 164577 ||||| || ||||| | || || || ||| |||||||| || || ||| || ||| Sbjct 2341171 AAAGGTATGCTATTATACGGTCCACCAGGTACTGGTAAAACTTTGATTGCTAGACAAATT 2341112 Query 164578 GCTCAAGCTTTTAAATCGC----GACCCGTTAAAATTGTTAATGGTCCTGAATTATTGAA 164633 | | ||| | || || ||| || || ||||||||| |||||||||||| | | Sbjct 2341111 GGT-AAGATGTTGAA-CGCAAAGGAACC--TAAAATTGTCAATGGTCCTGAAATTCTATC 2341056 Query 164634 CAAATATGTAGGTGAGTCAGAAGCTAATGTTAGAAAGTTGTTTCAGGAGGCTGAAGAAGA 164693 |||||| || ||| || |||| ||| | ||||| |||||| |||| || || | || Sbjct 2341055 CAAATACGTTGGTTCATCGGAAGAAAATATCAGAAATTTGTTTAAGGATGCAGAGGCCGA 2340996 Query 164694 --ACAAAAGAAAGCAGGTTTAGCTAGTAAATTACATGTTATTGTTTTTGATGAGATAGAT 164751 | ||| ||| |||| || | |||||| | ||| | |||||||| ||||| Sbjct 2340995 GTATAAATCAAA--AGGTGAAGGATCTTCGTTACATATCATTATCTTTGATGAATTAGAT 2340938 Query 164752 GCTCTTTGCAAAAAACGTGG---------TGATAATAT---TATTCATGATGCAGTGGTT 164799 || ||| |||| || | || |||| || | || |||| || ||| Sbjct 2340937 TCTGTTTTCAAACAAAGAGGCTCAAGAGGTGATGGTACCGGTGTTGCTGATAATGTTGTT 2340878 Query 164800 AATCAGTTGCTTTCTAAAATAGATGGTGTAGAATCCTTAAATAATATTTTAATTGTAGGT 164859 |||||||| | | ||||| |||||||| || || ||||| |||||| || | ||| Sbjct 2340877 AATCAGTTATTAGCCAAAATGGATGGTGTTGATCAATTGAATAACATTTTAGTTATTGGT 2340818 Query 164860 ATGACCAACCGACCTGATTTAATTGATGATGCTTTATTACGACCTGGTCGATTAGAATTG 164919 ||||| || || ||||| || ||| ||| || | |||| || |||| ||| | Sbjct 2340817 ATGACTAATAGAAGAGATTTGATAGATAGTGCATTGCTGAGACCGGGAAGATTTGAAGTT 2340758 Query 164920 AAAATAGAAATAGGATTACCCGACAAAGAAGGACGCCTTCAAATTTTA 164967 || | || || ||||| || |||| || | |||||||||| Sbjct 2340757 CAAGTTGAGATTCATTTACCTGATGAAGATGGTAGAACTCAAATTTTA 2340710 Score = 96.9 bits (106), Expect = 4e-15 Identities = 361/565 (64%), Gaps = 41/565 (7%) Strand=Plus/Plus Query 6706 GGATTATAATCTAACAATTCAAAATCTTCAAATTTAAAATCACATAAATTATCAGACttt 6765 ||||| ||||| | | |||||||||||| ||||| |||||| | ||| || ||| Sbjct 403947 GGATTGTAATCCACAACTTCAAAATCTTCGAATTTGAAATCATCAATATTTGCAACCTTA 404006 Query 6766 ttttttAATATTACAACAGGTGAAGGTTTTATTGATCGAGTT--AATTGTTCTTTTATAG 6823 | || | || ||| | ||| | || || | || | ||| ||||| | | Sbjct 404007 CGTCCTA-TCTTCAAACTTGGGAAATCTCTAG-GAACTCTTTGCATTTGCTCTTTCAGGG 404064 Query 6824 CTTTTATATGATCTAAATAAATATGAGCATCTCCTAGCGTATGAATAAATTCACCTGGTT 6883 | | | |||||| |||||| |||| ||| || | |||||||| || || | |||| Sbjct 404065 CATCGACATGATCGCAATAAACGTGAGAATCACCCATAGTATGAATGAACTCTGCAGGTT 404124 Query 6884 TCATATCAACAGCTTGAGCAATTAAATATGTTAATAATGCATAAGAAGCTACATTAAAAG 6943 ||||||||| | || ||||| | || | || ||| || || || | || |||| Sbjct 404125 CCATATCAACGACATGGGCAATCATGATGGTGAGTAGTGCGTATGAGGCGATGTTGAAAG 404184 Query 6944 GTACACCTAATCCCATATCTGCTGATCTTTGATAACATTGA--CAAGATAA--------- 6992 | || |||||||||||||| ||||||||||| ||| || || |||| Sbjct 404185 GAACGCCTAATCCCATATCACACGATCTTTGATA-CAT-GATGCACGATAGTTTTGGTTT 404242 Query 6993 AATA---------------TTGTCTATAG---------CATAAAATTGACACAATACATG 7028 | || || ||| | | | ||||||||||| || || || Sbjct 404243 ATTAGCTGTGCCATCTTCGTTATCTTTCGGGAAGTTGACGTAAAATTGACAGAAAACGTG 404302 Query 7029 ACATGGAGGTAAAACAGCCTGATCTATATCAGATGGATTCCAAGCAGTCATTAAAATACG 7088 ||| |||||||| | || | | | | | |||||||| ||| |||| | || | Sbjct 404303 ACAGGGAGGTAATGCCATTTGTTTGAAAGCCGGCGGATTCCAGGCACTCATGATGATTCT 404362 Query 7089 TCTATCATTTGGATTTGTTTTTAATTTTGTTATAATTATTTGTAATTGATCTATACCCTG 7148 ||| || | ||| ||||| ||||| ||||| | | | |||||| | ||| | Sbjct 404363 TCTGTCGTATGGGTTTGTCTTTAAGGAGGTTATCACTTGAGCGAGTTGATCGAAACCTTT 404422 Query 7149 ACCTTCATAATTAGTATGACAATTTATATAATTAGCTCCAAAATGTCTCCATTGAAACCC 7208 |||| ||||| |||| || | | || | || ||||||||||||||||| || || Sbjct 404423 ACCTGTATAATCTGTATCGCAGTCAACGTAGTCTGCACCAAAATGTCTCCATTGGAAACC 404482 Query 7209 ATAAATAGGACCTAAATCACCTTCT 7233 ||| | || || | ||||||||| Sbjct 404483 ATACACTGGGCCAAGGTCACCTTCT 404507 >seq8 Length=614380 Score = 87.8 bits (96), Expect = 2e-12 Identities = 125/176 (71%), Gaps = 0/176 (0%) Strand=Plus/Plus Query 19328 GTTAAAATTAAATTAAGATCTTCTAAAATACCTGAAATAGGTGATAAGTTTGCTTCTTTT 19387 |||||| ||| | | ||| || | || | || |||| |||||||| || |||||| Sbjct 241570 GTTAAAGTTAGAATGAGAACTACAAAGACTCCGCAAATTGGTGATAAATTCGCTTCTAGA 241629 Query 19388 ACTGCTCAAAAAGGCACATGTGGTATGATTTATCGTCAAGAAGATATGCCTTTTACTAAA 19447 || |||||| || || |||||| | ||| | || || |||||||| |||||| Sbjct 241630 CATGGTCAAAAGGGTACTATTGGTATAACATATAGACACGAGGATATGCCGTTTACTGCT 241689 Query 19448 GATGGTATAGTGCCGGATCTTATTATTAACCCACATGCTTTTCCAAGTCGAATGAC 19503 | ||||| || || ||| | || || |||||||||||| ||||| || ||||| Sbjct 241690 CAAGGTATTGTTCCAGATTTAATCATCAACCCACATGCTATTCCATCCCGTATGAC 241745 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 595871761651200