Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ogataea_20methanolica_20[genbank_20GCA_5F001600755.1_202016-03-01]
32 sequences; 15,086,366 total letters
Query= NC_021247.1
Length=228750
Score E
Sequences producing significant alignments: (Bits) Value
seq5 257 2e-63
seq2 129 9e-25
seq1 127 3e-24
seq9 109 8e-19
>seq5
Length=1013952
Score = 257 bits (284), Expect = 2e-63
Identities = 507/741 (68%), Gaps = 30/741 (4%)
Strand=Plus/Minus
Query 17979 ATAATAATCTATCTGCTACAAATTCGACATATTGTGACATCAAATCGCAATTCATACCTA 18038
||||||||||||| || ||||| || || ||||| ||||||| || |||||||| |
Sbjct 647892 ATAATAATCTATCAGCAACAAACTCAACGTATTGGCACATCAATTCTGCGTTCATACCCA 647833
Query 18039 GTAGTCTGAAAGGTAGAGCATCAATAATAAAT-TCTTTCTCTATCTCAACAGACTCTTTT 18097
|| | | |||| ||||| | | || ||||| || || ||||| | || |
Sbjct 647832 ATAATGCACATGGTAAGGCATCCGTGAAGTATCTCTTT-TCAATGTCAACTGCTTCAGTA 647774
Query 18098 ATTATGTTTATTACCCTAGATTTTGGCAATT----TATTAATTATGTGATTATAATATAA 18153
|| || || | || |||| || || | || | |||||| | ||||
Sbjct 647773 ATAATCTTGACAACA----ATTTCTTCATTTGGAGTGTTGTTCATGTGAG---AGAATAA 647721
Query 18154 TAAACACGCAAAATCAGTGTGTAAACCTTCATCTCTGGATATTAATTCGTTACTAAACGT 18213
|||||| ||||||||||||||||||||||||||||| | || ||||| ||| || ||
Sbjct 647720 TAAACAAGCAAAATCAGTGTGTAAACCTTCATCTCTACAAATCAATTCATTAGAGAAAGT 647661
Query 18214 TAACCCGGGCATTATACCTCttttttttAGCCAAAATATCGATGCGAAACTACTAGAAAA 18273
||| || ||||||| ||||| ||||| | |||||| || || || || || ||| ||
Sbjct 647660 TAAGCCCGGCATTAGGCCTCTCTTTTTCAACCAAAAGATAGAAGCAAATGAACCAGAGAA 647601
Query 18274 GAATATACCCTCAAC-GCACGCGAACGCTATTAATCTTTCAGC---AAAACTGTATTTAT 18329
||| ||||| || || ||| || || || | ||||||||| || || | | || |
Sbjct 647600 GAAGATACCTTCGACAGCA-GCAAAGGCAACTAATCTTTCGGCGAATAAGCCATTTTCGT 647542
Query 18330 TGCTCAGTATCCATTTTTGTGCCCATTCTCCTTNNNNNNNNATACACGGTATACTCTCTA 18389
|| || |||||| | ||||| || | | || || || ||| |||| |
Sbjct 647541 TGTTC---ATCCATCTCATGGCCCAGTCAGCCTTTTCCTTGATGCAAGGAATAGTCTCAA 647485
Query 18390 TAGCATT---AAACAAATCATCTTTTTCTTTGGAATCTTTTATATAAGTGTCGATTAACA 18446
||||||| || || ||| | | |||||| ||| || | ||| |||||||| || |
Sbjct 647484 TAGCATTGAATAAGAAGTCAGC--CTCCTTTGG-ATCCTTAACATAGGTGTCGATCAATA 647428
Query 18447 AAGAATACATTTCAGAATGTATGCTTTCCATAGCTATCTGAAAACTATAAAACGATCTAG 18506
| || || ||||||| || ||| ||||||| ||||| |||| || || | | |
Sbjct 647427 ATGAGTAAGTTTCAGAGTGGATGTTTTCCATCATGATCTGGAAACCGTAGAAACACTTGG 647368
Query 18507 CCTCGGGATATTGAATCTCGCTATAAAATCTTTCTACCAAATTCTCATTAACTATACCGT 18566
| || ||| ||| | ||| | |||| |||| ||||| ||||| ||||| |||||||
Sbjct 647367 CTTCTGGAATTTGGACTTCGGCAGAAAAGTTTTCAACCAAGTTCTCGTTAACAATACCGT 647308
Query 18567 CAGCAGATGCGAAAAATGCCAAAACATATTTAATGAAATGTTTTTCATTATCCTTGA--- 18623
| | | ||| || || || ||||| | ||||||| | |||| | || || |
Sbjct 647307 CGGAGGCTGCAAAGAAAGCTAAAACTCTTGAAATGAAAAATCTTTCGCTTTCATTTAATC 647248
Query 18624 GATTGTTCCATTCATCTATATCTTTTGATAGATCAACTTCTTCCGATGTCCAAAAAGATG 18683
|||||||| |||| |||| ||||||| ||||| |||||| | ||||| ||||| |
Sbjct 647247 TGTTGTTCCAGTCATGAGTATCCTTTGATAAATCAATTTCTTCTGCAGTCCAGAAAGAAG 647188
Query 18684 ATTCGGCCTGTTTGTACATTT 18704
||| |||| ||||||||||
Sbjct 647187 CTTCAGCCTTCTTGTACATTT 647167
>seq2
Length=3419278
Score = 129 bits (142), Expect = 9e-25
Identities = 184/256 (72%), Gaps = 6/256 (2%)
Strand=Plus/Minus
Query 155797 TTTATAATAAAAATTTATGTAATAAAATGCAAATATTTATTAAAACATTGACTGGAAAAA 155856
|||||| | |||||| || | | |||||||| || ||||||| || ||||| || |
Sbjct 1617342 TTTATATCATTAATTTAGGTCA--AGATGCAAATTTTCGTTAAAACCTTAACTGGTAAGA 1617285
Query 155857 CTATTACATTAGAAGTCGAAGATTCTGATAATATTTTAAACGTGAAAAATAAAATACAAG 155916
| || || ||||| |||||| || || | |||| ||||| || || || ||||
Sbjct 1617284 CCATCACTTTAGAGGTCGAATCATCCGACACTATTGACAACGTTAAGTCAAAGATCCAAG 1617225
Query 155917 ATAAAGAAGGCATACCTCCAGAACAACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAG 155976
|||| ||||| || || || || ||||| ||||| || | ||| |||||||| | ||||
Sbjct 1617224 ATAAGGAAGGTATCCCACCTGATCAACAGAGATTAATCTTTGCTGGTAAGCAATTAGAAG 1617165
Query 155977 ATACCAGAACTTTATCAGATTATAATATATCCAAA--GAGGCGACGCTTCATTTAGTGTT 156034
|| ||||||||||| || || || || ||||| || | || | || || || ||
Sbjct 1617164 ATGGTAGAACTTTATCCGACTACAACAT--CCAAAAGGAATCAACTTTACACTTGGTCTT 1617107
Query 156035 AAGATTAAGAGGCGGT 156050
||||||||||| |||
Sbjct 1617106 GAGATTAAGAGGTGGT 1617091
>seq1
Length=3681944
Score = 127 bits (140), Expect = 3e-24
Identities = 169/232 (73%), Gaps = 2/232 (1%)
Strand=Plus/Minus
Query 155821 AAATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATT 155880
|||||||||| || ||||||| || ||||| || || || || ||||| |||||| |
Sbjct 1219340 AAATGCAAATTTTCGTTAAAACCTTAACTGGTAAGACCATCACTTTAGAGGTCGAATCCT 1219281
Query 155881 CTGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAAC 155940
| || | ||| || || || || || ||||| || ||||| || || || || |
Sbjct 1219280 CAGACACCATTGACAATGTCAAGTCCAAGATCCAAGACAAGGAAGGTATTCCACCTGATC 1219221
Query 155941 AACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATA 156000
|||||||||| || | ||| |||||||| | |||||| ||||| ||||| || || |
Sbjct 1219220 AACAAAGATTAATCTTTGCTGGTAAGCAATTGGAAGATGGTAGAACCTTATCTGACTACA 1219161
Query 156001 ATATATCCAAAG-AGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGGTG 156051
| || || |||| | | || | || ||||| |||||||||||||| ||||
Sbjct 1219160 ACAT-TCAAAAGGAATCCACCTTGCACTTAGTCTTAAGATTAAGAGGTGGTG 1219110
>seq9
Length=470967
Score = 109 bits (120), Expect = 8e-19
Identities = 128/173 (74%), Gaps = 0/173 (0%)
Strand=Plus/Minus
Query 155820 AAAATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGAT 155879
|| |||||||| || ||||||| || ||||| || || || || ||||| || ||| |
Sbjct 292512 AACATGCAAATTTTCGTTAAAACTTTAACTGGTAAGACCATCACCTTAGAGGTTGAATCT 292453
Query 155880 TCTGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAA 155939
|| |||| |||| || ||||| ||||| |||||||| ||||| || || || ||
Sbjct 292452 TCCGATACTATTGATAATGTGAAGTCGAAAATCCAAGATAAGGAAGGTATTCCACCTGAT 292393
Query 155940 CAACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATC 155992
||||||||||| || | ||| ||||| || | ||||| ||||| |||||
Sbjct 292392 CAACAAAGATTAATCTTTGCTGGTAAACAATTAGAAGACGGTAGAACATTATC 292340
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 731871707251200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |