Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ogataea_20methanolica_20[genbank_20GCA_5F001600755.1_202016-03-01] 32 sequences; 15,086,366 total letters Query= NC_021247.1 Length=228750 Score E Sequences producing significant alignments: (Bits) Value seq5 257 2e-63 seq2 129 9e-25 seq1 127 3e-24 seq9 109 8e-19 >seq5 Length=1013952 Score = 257 bits (284), Expect = 2e-63 Identities = 507/741 (68%), Gaps = 30/741 (4%) Strand=Plus/Minus Query 17979 ATAATAATCTATCTGCTACAAATTCGACATATTGTGACATCAAATCGCAATTCATACCTA 18038 ||||||||||||| || ||||| || || ||||| ||||||| || |||||||| | Sbjct 647892 ATAATAATCTATCAGCAACAAACTCAACGTATTGGCACATCAATTCTGCGTTCATACCCA 647833 Query 18039 GTAGTCTGAAAGGTAGAGCATCAATAATAAAT-TCTTTCTCTATCTCAACAGACTCTTTT 18097 || | | |||| ||||| | | || ||||| || || ||||| | || | Sbjct 647832 ATAATGCACATGGTAAGGCATCCGTGAAGTATCTCTTT-TCAATGTCAACTGCTTCAGTA 647774 Query 18098 ATTATGTTTATTACCCTAGATTTTGGCAATT----TATTAATTATGTGATTATAATATAA 18153 || || || | || |||| || || | || | |||||| | |||| Sbjct 647773 ATAATCTTGACAACA----ATTTCTTCATTTGGAGTGTTGTTCATGTGAG---AGAATAA 647721 Query 18154 TAAACACGCAAAATCAGTGTGTAAACCTTCATCTCTGGATATTAATTCGTTACTAAACGT 18213 |||||| ||||||||||||||||||||||||||||| | || ||||| ||| || || Sbjct 647720 TAAACAAGCAAAATCAGTGTGTAAACCTTCATCTCTACAAATCAATTCATTAGAGAAAGT 647661 Query 18214 TAACCCGGGCATTATACCTCttttttttAGCCAAAATATCGATGCGAAACTACTAGAAAA 18273 ||| || ||||||| ||||| ||||| | |||||| || || || || || ||| || Sbjct 647660 TAAGCCCGGCATTAGGCCTCTCTTTTTCAACCAAAAGATAGAAGCAAATGAACCAGAGAA 647601 Query 18274 GAATATACCCTCAAC-GCACGCGAACGCTATTAATCTTTCAGC---AAAACTGTATTTAT 18329 ||| ||||| || || ||| || || || | ||||||||| || || | | || | Sbjct 647600 GAAGATACCTTCGACAGCA-GCAAAGGCAACTAATCTTTCGGCGAATAAGCCATTTTCGT 647542 Query 18330 TGCTCAGTATCCATTTTTGTGCCCATTCTCCTTNNNNNNNNATACACGGTATACTCTCTA 18389 || || |||||| | ||||| || | | || || || ||| |||| | Sbjct 647541 TGTTC---ATCCATCTCATGGCCCAGTCAGCCTTTTCCTTGATGCAAGGAATAGTCTCAA 647485 Query 18390 TAGCATT---AAACAAATCATCTTTTTCTTTGGAATCTTTTATATAAGTGTCGATTAACA 18446 ||||||| || || ||| | | |||||| ||| || | ||| |||||||| || | Sbjct 647484 TAGCATTGAATAAGAAGTCAGC--CTCCTTTGG-ATCCTTAACATAGGTGTCGATCAATA 647428 Query 18447 AAGAATACATTTCAGAATGTATGCTTTCCATAGCTATCTGAAAACTATAAAACGATCTAG 18506 | || || ||||||| || ||| ||||||| ||||| |||| || || | | | Sbjct 647427 ATGAGTAAGTTTCAGAGTGGATGTTTTCCATCATGATCTGGAAACCGTAGAAACACTTGG 647368 Query 18507 CCTCGGGATATTGAATCTCGCTATAAAATCTTTCTACCAAATTCTCATTAACTATACCGT 18566 | || ||| ||| | ||| | |||| |||| ||||| ||||| ||||| ||||||| Sbjct 647367 CTTCTGGAATTTGGACTTCGGCAGAAAAGTTTTCAACCAAGTTCTCGTTAACAATACCGT 647308 Query 18567 CAGCAGATGCGAAAAATGCCAAAACATATTTAATGAAATGTTTTTCATTATCCTTGA--- 18623 | | | ||| || || || ||||| | ||||||| | |||| | || || | Sbjct 647307 CGGAGGCTGCAAAGAAAGCTAAAACTCTTGAAATGAAAAATCTTTCGCTTTCATTTAATC 647248 Query 18624 GATTGTTCCATTCATCTATATCTTTTGATAGATCAACTTCTTCCGATGTCCAAAAAGATG 18683 |||||||| |||| |||| ||||||| ||||| |||||| | ||||| ||||| | Sbjct 647247 TGTTGTTCCAGTCATGAGTATCCTTTGATAAATCAATTTCTTCTGCAGTCCAGAAAGAAG 647188 Query 18684 ATTCGGCCTGTTTGTACATTT 18704 ||| |||| |||||||||| Sbjct 647187 CTTCAGCCTTCTTGTACATTT 647167 >seq2 Length=3419278 Score = 129 bits (142), Expect = 9e-25 Identities = 184/256 (72%), Gaps = 6/256 (2%) Strand=Plus/Minus Query 155797 TTTATAATAAAAATTTATGTAATAAAATGCAAATATTTATTAAAACATTGACTGGAAAAA 155856 |||||| | |||||| || | | |||||||| || ||||||| || ||||| || | Sbjct 1617342 TTTATATCATTAATTTAGGTCA--AGATGCAAATTTTCGTTAAAACCTTAACTGGTAAGA 1617285 Query 155857 CTATTACATTAGAAGTCGAAGATTCTGATAATATTTTAAACGTGAAAAATAAAATACAAG 155916 | || || ||||| |||||| || || | |||| ||||| || || || |||| Sbjct 1617284 CCATCACTTTAGAGGTCGAATCATCCGACACTATTGACAACGTTAAGTCAAAGATCCAAG 1617225 Query 155917 ATAAAGAAGGCATACCTCCAGAACAACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAG 155976 |||| ||||| || || || || ||||| ||||| || | ||| |||||||| | |||| Sbjct 1617224 ATAAGGAAGGTATCCCACCTGATCAACAGAGATTAATCTTTGCTGGTAAGCAATTAGAAG 1617165 Query 155977 ATACCAGAACTTTATCAGATTATAATATATCCAAA--GAGGCGACGCTTCATTTAGTGTT 156034 || ||||||||||| || || || || ||||| || | || | || || || || Sbjct 1617164 ATGGTAGAACTTTATCCGACTACAACAT--CCAAAAGGAATCAACTTTACACTTGGTCTT 1617107 Query 156035 AAGATTAAGAGGCGGT 156050 ||||||||||| ||| Sbjct 1617106 GAGATTAAGAGGTGGT 1617091 >seq1 Length=3681944 Score = 127 bits (140), Expect = 3e-24 Identities = 169/232 (73%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 155821 AAATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATT 155880 |||||||||| || ||||||| || ||||| || || || || ||||| |||||| | Sbjct 1219340 AAATGCAAATTTTCGTTAAAACCTTAACTGGTAAGACCATCACTTTAGAGGTCGAATCCT 1219281 Query 155881 CTGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAAC 155940 | || | ||| || || || || || ||||| || ||||| || || || || | Sbjct 1219280 CAGACACCATTGACAATGTCAAGTCCAAGATCCAAGACAAGGAAGGTATTCCACCTGATC 1219221 Query 155941 AACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATA 156000 |||||||||| || | ||| |||||||| | |||||| ||||| ||||| || || | Sbjct 1219220 AACAAAGATTAATCTTTGCTGGTAAGCAATTGGAAGATGGTAGAACCTTATCTGACTACA 1219161 Query 156001 ATATATCCAAAG-AGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGGTG 156051 | || || |||| | | || | || ||||| |||||||||||||| |||| Sbjct 1219160 ACAT-TCAAAAGGAATCCACCTTGCACTTAGTCTTAAGATTAAGAGGTGGTG 1219110 >seq9 Length=470967 Score = 109 bits (120), Expect = 8e-19 Identities = 128/173 (74%), Gaps = 0/173 (0%) Strand=Plus/Minus Query 155820 AAAATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGAT 155879 || |||||||| || ||||||| || ||||| || || || || ||||| || ||| | Sbjct 292512 AACATGCAAATTTTCGTTAAAACTTTAACTGGTAAGACCATCACCTTAGAGGTTGAATCT 292453 Query 155880 TCTGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAA 155939 || |||| |||| || ||||| ||||| |||||||| ||||| || || || || Sbjct 292452 TCCGATACTATTGATAATGTGAAGTCGAAAATCCAAGATAAGGAAGGTATTCCACCTGAT 292393 Query 155940 CAACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATC 155992 ||||||||||| || | ||| ||||| || | ||||| ||||| ||||| Sbjct 292392 CAACAAAGATTAATCTTTGCTGGTAAACAATTAGAAGACGGTAGAACATTATC 292340 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 731871707251200