Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ogataea_20methanolica_20[genbank_20GCA_5F001600755.1_202016-03-01] 32 sequences; 15,086,366 total letters Query= NC_021248.1 Length=307691 Score E Sequences producing significant alignments: (Bits) Value seq5 217 3e-51 seq2 178 3e-39 seq1 170 4e-37 seq9 159 7e-34 >seq5 Length=1013952 Score = 217 bits (240), Expect = 3e-51 Identities = 528/801 (66%), Gaps = 16/801 (2%) Strand=Plus/Minus Query 49645 ATAATAATCTATCGGCTACAAATTCAACATATTGTGACATTAATTCACAATTCATACCCA 49704 ||||||||||||| || ||||| ||||| ||||| |||| ||||| |||||||||| Sbjct 647892 ATAATAATCTATCAGCAACAAACTCAACGTATTGGCACATCAATTCTGCGTTCATACCCA 647833 Query 49705 ATAATTTAAATGGTAATGCATCA-TCAATAAATTCtttttctatttctacagcttgttta 49763 ||||| | ||||||| ||||| | || | |||||| | || || || |||| || Sbjct 647832 ATAATGCACATGGTAAGGCATCCGTGAAGTATCTCTTTT-CAATGTCAACTGCTTCAGTA 647774 Query 49764 attatcataattatattattttttgataatt----tatatttaatatgattcgcatatat 49819 || ||| | | | | |||| || || || | | || || ||| | ||| Sbjct 647773 ATAATCTTGACAACA--ATTTCTTCAT--TTGGAGTGTTGTTCATGTGA---GAGAATAA 647721 Query 49820 taaACATGCAAAATCAGTATGTAAACCCTCGTCCCTAGATATAAATTCATTACTAAAAGT 49879 |||||| ||||||||||| |||||||| || || ||| | || ||||||||| ||||| Sbjct 647720 TAAACAAGCAAAATCAGTGTGTAAACCTTCATCTCTACAAATCAATTCATTAGAGAAAGT 647661 Query 49880 TAATCCTGGCATTAATCCTCTCTTTTTAAGCCAAAATATTGATGCAAAACTACTAGAAAA 49939 ||| || ||||||| ||||||||||| | |||||| || || ||||| || ||| || Sbjct 647660 TAAGCCCGGCATTAGGCCTCTCTTTTTCAACCAAAAGATAGAAGCAAATGAACCAGAGAA 647601 Query 49940 GAATATACCCTCGACACACGCAAATGCTATTATTCTTGCTCCAAACATTAATTTATCATC 49999 ||| ||||| |||||| ||||| || | || |||| | | || | || || | Sbjct 647600 GAAGATACCTTCGACAGCAGCAAAGGCAACTAATCTTTCGGCGAATAAGCCATTTTCGTT 647541 Query 50000 TAATATCCAATTTATAGCCCAATCTGCtttttttttGATAGAAGGTATATTTTCTATAGC 50059 ||||| | || ||||| || || |||| ||||| |||| ||| | || ||||| Sbjct 647540 GTTCATCCATCTCATGGCCCAGTCAGCCTTTTCCTTGATGCAAGGAATAGTCTCAATAGC 647481 Query 50060 TTTAAATAATTCAtttttttCATNNNNNNNNNNNNNNNNNNNNNNNATTAATAAAGAATA 50119 || ||||| | || | || ||||| || || Sbjct 647480 ATTGAATAAGAAGTCAGCCTCCTTTGGATCCTTAACATAGGTGTCGATCAATAATGAGTA 647421 Query 50120 CATTTCAGAATGTACAGCTTCCATAGCTATTTGAAATGAATAAAATTGTCTTGCTTCTGA 50179 ||||||| || | |||||| || || || || || | ||||||| Sbjct 647420 AGTTTCAGAGTGGATGTTTTCCATCATGATCTGGAAACCGTAGAAACACTTGGCTTCTGG 647361 Query 50180 ATACTGAACTTCGGAAAAGAATCGTTCAACTAAATTCTCAGATACAATACCATCAGATGC 50239 | || ||||||| | | || |||||| || ||||| |||||||| || || || Sbjct 647360 AATTTGGACTTCGGCAGAAAAGTTTTCAACCAAGTTCTCGTTAACAATACCGTCGGAGGC 647301 Query 50240 TGCGAAGAATGCTAAAACGTATTTAATAAAATGTTTTTCATTATCTTTTAA---ATTTTC 50296 ||| ||||| |||||||| | ||| ||| | |||| | || ||||| || | Sbjct 647300 TGCAAAGAAAGCTAAAACTCTTGAAATGAAAAATCTTTCGCTTTCATTTAATCTGTTGTT 647241 Query 50297 CCAAGATTCAAGATCGTTTGATAAATCTACTTCTTCTATTGTCCAAAATGATGCTACGGA 50356 ||| | | ||| ||||||||||| | ||||||| ||||| || || ||| | | Sbjct 647240 CCAGTCATGAGTATCCTTTGATAAATCAATTTCTTCTGCAGTCCAGAAAGAAGCTTCAGC 647181 Query 50357 TTTTTTATACATTTGATATATATCAAAATGTTCAATGGGAAATAGTACATATCGTTTAGT 50416 || || |||||||| | || ||| | || ||| || || | ||| ||| ||| | Sbjct 647180 CTTCTTGTACATTTGCCAGATTTCATGGTATTTAATTGGGAACAAAACAAATCTTTTTTT 647121 Query 50417 AtttttttCTAATATCGGTTC 50437 |||| || ||||| ||| || Sbjct 647120 GTTTTCTTGTAATAACGGCTC 647100 >seq2 Length=3419278 Score = 178 bits (196), Expect = 3e-39 Identities = 184/241 (76%), Gaps = 0/241 (0%) Strand=Plus/Plus Query 192299 GTTTAATAATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATAT 192358 ||| ||||||||||||||| | | || || || |||||||| | || || ||| | Sbjct 1617081 GTTCAATAATACCACCTCTTAATCTCAAGACCAAGTGTAAAGTTGATTCCTTTTGGATGT 1617140 Query 192359 TATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTT 192418 | || || ||||| |||| |||| || ||||| ||||||||||||||||||||||||| Sbjct 1617141 TGTAGTCGGATAAAGTTCTACCATCTTCTAATTGCTTACCAGCAAAGATTAATCTCTGTT 1617200 Query 192419 GATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTG 192478 |||||||||| || ||||| |||||||| || || || || || |||| || | Sbjct 1617201 GATCAGGTGGGATACCTTCCTTATCTTGGATCTTTGACTTAACGTTGTCAATAGTGTCGG 1617260 Query 192479 ACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATTT 192538 | ||||| || |||| ||| ||||| ||||||||||| ||||||| || || ||||| | Sbjct 1617261 ATGATTCGACCTCTAAAGTGATGGTCTTACCAGTTAAGGTTTTAACGAAAATTTGCATCT 1617320 Query 192539 T 192539 | Sbjct 1617321 T 1617321 >seq1 Length=3681944 Score = 170 bits (188), Expect = 4e-37 Identities = 178/231 (77%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 192309 ACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTC-TTTAGAGATATTATAATCAG 192367 ||||||||| | | ||| ||||| || || || | || ||| || || || || |||| Sbjct 1219111 ACCACCTCTTAATCTTAAGACTAAGTGCAAGGTGGATTCCTTTTGA-ATGTTGTAGTCAG 1219169 Query 192368 ATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTG 192427 |||| |||| |||| |||||||| |||||||||||||||||||| ||||||||||||| Sbjct 1219170 ATAAGGTTCTACCATCTTCCAATTGCTTACCAGCAAAGATTAATCTTTGTTGATCAGGTG 1219229 Query 192428 GTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTA 192487 | || ||||| || ||||| || || || ||||| || | ||||| ||||| | Sbjct 1219230 GAATACCTTCCTTGTCTTGGATCTTGGACTTGACATTGTCAATGGTGTCTGAGGATTCGA 1219289 Query 192488 CTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATTT 192538 | |||| ||| ||||| ||||||||||| ||||||| || || ||||||| Sbjct 1219290 CCTCTAAAGTGATGGTCTTACCAGTTAAGGTTTTAACGAAAATTTGCATTT 1219340 >seq9 Length=470967 Score = 159 bits (176), Expect = 7e-34 Identities = 139/173 (80%), Gaps = 0/173 (0%) Strand=Plus/Plus Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 |||||||||| | || || |||||||||||||||||||||||||| |||||||||||| Sbjct 292340 GATAATGTTCTACCGTCTTCTAATTGTTTACCAGCAAAGATTAATCTTTGTTGATCAGGT 292399 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || ||||| |||||||| ||||| || |||||| |||| ||| || ||||| Sbjct 292400 GGAATACCTTCCTTATCTTGGATTTTCGACTTCACATTATCAATAGTATCGGAAGATTCA 292459 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATTTT 192539 || |||| || ||||| ||||||||||| ||||||| || || ||||| || Sbjct 292460 ACCTCTAAGGTGATGGTCTTACCAGTTAAAGTTTTAACGAAAATTTGCATGTT 292512 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 984479596363200