Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ogataea_20methanolica_20[genbank_20GCA_5F001600755.1_202016-03-01] 32 sequences; 15,086,366 total letters Query= NC_021249.1 Length=282895 Score E Sequences producing significant alignments: (Bits) Value seq5 223 6e-53 seq2 168 1e-36 seq1 163 5e-35 seq9 154 3e-32 >seq5 Length=1013952 Score = 223 bits (246), Expect = 6e-53 Identities = 597/917 (65%), Gaps = 18/917 (2%) Strand=Plus/Minus Query 38832 TTTTGGTATTCAGAAACttttttttCGAAAAAGTTTGTTTTTCCTTCTAATGATATTAAA 38891 |||||||| || || ||| | ||||| || ||||| || || || |||| || || Sbjct 648007 TTTTGGTAGTCGGACACTCTCTTTTCAAAGAAGTTGGTCTTACCAGCTAAAGAAATATTT 647948 Query 38892 TTCATAAAATCAAATGGATTTTTGGTATTATAATATTTTTCTCCTATCAATACATA-TAA 38950 | |||||| || ||||| || || || || | || | | | | | | | ||| ||| Sbjct 647947 TCCATAAAGTCGAATGGGTTGTTAACCTTGTAGTGCTTCT-TGCAACCTAAAGATAATAA 647889 Query 38951 TAATCTATCGGCCACAAATTCAACATATTGTAACATTAATTCACAATTCATACCCAATAA 39010 ||||||||| || ||||| ||||| ||||| |||| ||||| |||||||||||||| Sbjct 647888 TAATCTATCAGCAACAAACTCAACGTATTGGCACATCAATTCTGCGTTCATACCCAATAA 647829 Query 39011 TTTAAATGGTAATGCATCA-TCAATAAATTCtttttctatttctacagcttgtttaatta 39069 | | ||||||| ||||| | || | |||||| | || || || |||| |||| | Sbjct 647828 TGCACATGGTAAGGCATCCGTGAAGTATCTCTTTT-CAATGTCAACTGCTTCAGTAATAA 647770 Query 39070 tcataattatattattttttgataatt----tatatttaatatgattcgcatataGTAAA 39125 || | | | | |||| || || || | | || || ||| | ||| |||| Sbjct 647769 TCTTGACAACA--ATTTCTTCAT--TTGGAGTGTTGTTCATGTGA---GAGAATAATAAA 647717 Query 39126 CATGCAAAATCCGTATGTAAACCTTCGTCCCTAGATATAAATTCATTACTAAAAGTTAAT 39185 || |||||||| || ||||||||||| || ||| | || ||||||||| |||||||| Sbjct 647716 CAAGCAAAATCAGTGTGTAAACCTTCATCTCTACAAATCAATTCATTAGAGAAAGTTAAG 647657 Query 39186 CCTGGCATTAATCCTCTCTTTTTAAGCCAAAATATTGATGCAAAACTACTAGAAAAGAAT 39245 || ||||||| ||||||||||| | |||||| || || ||||| || ||| ||||| Sbjct 647656 CCCGGCATTAGGCCTCTCTTTTTCAACCAAAAGATAGAAGCAAATGAACCAGAGAAGAAG 647597 Query 39246 ATACCCTCCACACACGCAAATGCTATTATTCTTGCTCCAAACATTAATTTATCATCTAAA 39305 ||||| || ||| ||||| || | || |||| | | || | || || | Sbjct 647596 ATACCTTCGACAGCAGCAAAGGCAACTAATCTTTCGGCGAATAAGCCATTTTCGTTGTTC 647537 Query 39306 ATCCAATTTATGGCCCAATCTGCtttttttttGATAGAAGGTATATTTTCTATAGCTTTA 39365 ||||| | |||||||| || || |||| ||||| |||| ||| | || ||||| || Sbjct 647536 ATCCATCTCATGGCCCAGTCAGCCTTTTCCTTGATGCAAGGAATAGTCTCAATAGCATTG 647477 Query 39366 AATAATTCATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGAATACATT 39425 ||||| | || || || Sbjct 647476 AATAAGAAGTCAGCCTCCTTTGGATCCTTAACATAGGTGTCGATCAATAATGAGTAAGTT 647417 Query 39426 TCAGAATGTACAGCTTCCATAGCTATTTGAAATGAATAAAATTGCCTTGCTTCTGAATAC 39485 ||||| || | |||||| || || || || || | | ||||||| | Sbjct 647416 TCAGAGTGGATGTTTTCCATCATGATCTGGAAACCGTAGAAACACTTGGCTTCTGGAATT 647357 Query 39486 TGAACTTCGGAAAAGAATCGTTCAACTAAATTCTCAGATACAATACCATCAGATGCTGCG 39545 || ||||||| | | || |||||| || ||||| |||||||| || || ||||| Sbjct 647356 TGGACTTCGGCAGAAAAGTTTTCAACCAAGTTCTCGTTAACAATACCGTCGGAGGCTGCA 647297 Query 39546 AAGAATGCTAAAACATATTTAATAAAATGTTTTTCATTATCTTTTAA---ATTTTCCCAA 39602 ||||| |||||||| | ||| ||| | |||| | || ||||| || | ||| Sbjct 647296 AAGAAAGCTAAAACTCTTGAAATGAAAAATCTTTCGCTTTCATTTAATCTGTTGTTCCAG 647237 Query 39603 GATTCAAGATCGTTTGATAAATCTACTTCTTCTATTGTCCAAAAAGATGCTACGGATTTT 39662 | | ||| ||||||||||| | ||||||| ||||| ||||| ||| | | || Sbjct 647236 TCATGAGTATCCTTTGATAAATCAATTTCTTCTGCAGTCCAGAAAGAAGCTTCAGCCTTC 647177 Query 39663 TTATACATTTGATATATATCAAAATGTTCAATGGGAAATAACACATATCGTTTAGTAttt 39722 || |||||||| | || ||| | || ||| || || || ||| ||| ||| | ||| Sbjct 647176 TTGTACATTTGCCAGATTTCATGGTATTTAATTGGGAACAAAACAAATCTTTTTTTGTTT 647117 Query 39723 ttttCTAATATCGGTTC 39739 | || ||||| ||| || Sbjct 647116 TCTTGTAATAACGGCTC 647100 >seq2 Length=3419278 Score = 168 bits (186), Expect = 1e-36 Identities = 179/236 (76%), Gaps = 0/236 (0%) Strand=Plus/Plus Query 171837 ATAATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAA 171896 |||||||||||||| | || || || || |||||||| | || || || || || Sbjct 1617086 ATAATACCACCTCTTAATCTCAAGACCAAGTGTAAAGTTGATTCCTTTTGGATGTTGTAG 1617145 Query 171897 TCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCA 171956 || ||||||| || | || || ||||| ||||||||||| |||||||||||||| ||| Sbjct 1617146 TCGGATAAAGTTCTACCATCTTCTAATTGCTTACCAGCAAAGATTAATCTCTGTTGATCA 1617205 Query 171957 GGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGAT 172016 ||||| || ||||| |||||||| || || || || || ||||| || || ||| Sbjct 1617206 GGTGGGATACCTTCCTTATCTTGGATCTTTGACTTAACGTTGTCAATAGTGTCGGATGAT 1617265 Query 172017 TCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATTTT 172072 || || |||| ||| ||||| ||||||||||| ||||||| ||| || ||||| || Sbjct 1617266 TCGACCTCTAAAGTGATGGTCTTACCAGTTAAGGTTTTAACGAAAATTTGCATCTT 1617321 >seq1 Length=3681944 Score = 163 bits (180), Expect = 5e-35 Identities = 179/238 (75%), Gaps = 0/238 (0%) Strand=Plus/Plus Query 171834 TTCATAATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTA 171893 ||| || ||||||||| | || ||| ||||| || || || | || || ||| || Sbjct 1219103 TTCTTACCACCACCTCTTAATCTTAAGACTAAGTGCAAGGTGGATTCCTTTTGAATGTTG 1219162 Query 171894 TAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGG 171953 || || ||||| | || | || |||||||| ||||||||||| |||||||| ||||| Sbjct 1219163 TAGTCAGATAAGGTTCTACCATCTTCCAATTGCTTACCAGCAAAGATTAATCTTTGTTGA 1219222 Query 171954 TCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGAC 172013 |||||||| || ||||| || ||||| || || || ||||| || || ||||| Sbjct 1219223 TCAGGTGGAATACCTTCCTTGTCTTGGATCTTGGACTTGACATTGTCAATGGTGTCTGAG 1219282 Query 172014 GATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATTT 172071 ||||| || |||| ||| ||||| ||||||||||| ||||||| ||| || ||||||| Sbjct 1219283 GATTCGACCTCTAAAGTGATGGTCTTACCAGTTAAGGTTTTAACGAAAATTTGCATTT 1219340 >seq9 Length=470967 Score = 154 bits (170), Expect = 3e-32 Identities = 138/173 (80%), Gaps = 0/173 (0%) Strand=Plus/Plus Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 ||||| | || |||| || ||||||||||||||||| |||||||| ||||| |||||| Sbjct 292340 GATAATGTTCTACCGTCTTCTAATTGTTTACCAGCAAAGATTAATCTTTGTTGATCAGGT 292399 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || ||||| |||||||| ||||| || |||||| |||||||| || ||||| Sbjct 292400 GGAATACCTTCCTTATCTTGGATTTTCGACTTCACATTATCAATAGTATCGGAAGATTCA 292459 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATTTT 172072 || |||| || ||||| ||||||||||| ||||||| ||| || ||||| || Sbjct 292460 ACCTCTAAGGTGATGGTCTTACCAGTTAAAGTTTTAACGAAAATTTGCATGTT 292512 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 905135637945600